Rh6CG034600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008165
Physical Location & Seq
Forward (+)
3206730 .. 3213065
6336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG034600.1

Sequence Viewer

Length: 429 bp
ATGAGAAGGTGGCCAGGAGCTCTGAGTATCAATTGGACTAGAGTGAGATCAGTTCATGGAACTGGCAGCTCTAGATCGCCTTTTAGTGAACAAAAGAGCATTGAAGAGTTGATAGCTCTTGATCAAACTCCTGACTCATGGTTTGCGATTTGGGCAAGCAAGTGTAAGAAGGCTATTGGTTTTGCTGAGGGTCTAGTAATCCATAGAGGGTATTCCACAATTATGACCCAAACCCAGTTAATCTGGACCCAAACCCGGGGTGTGGTACTTAAGGAGGCTTCTGAGGAGGTGAGGAGGGAGAGAGGCGTTGGAGATGTAGGAGTCTGCGATTGCAAAGATGGTGGAGTTTGGCGACGAGAGGAAGTGGTCCAGCGAGATTTGGAGGAGCGCCACCGTGATGGTGAAGCTAGAGGTCTAGATAGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.15

Weight (kDa)

7.75

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 11
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 3 cut(s) 255, 256, 262
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 4 cut(s) 20, 69, 116, 407
AluI AGCT 4 cut(s) 20, 69, 116, 407
Alw21I GWGCWC 1 cut(s) 22
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 66
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 246, 367
AsuC2I CCSGG 2 cut(s) 256, 257
AsuHPI GGTGA 2 cut(s) 301, 413
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 246, 367
BalI TGGCCA 1 cut(s) 13
BanII GRGCYC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 332, 392
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 2 cut(s) 256, 257
BfaI CTAG 5 cut(s) 39, 72, 194, 408, 416
BfoI RGCGCY 1 cut(s) 391
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 3 cut(s) 15, 256, 257
Bme18I GGWCC 2 cut(s) 246, 367
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 246, 367
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 3 cut(s) 15, 256, 257
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 256, 257
BsaJI CCNNGG 2 cut(s) 255, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 256, 262
Bse1I ACTGG 2 cut(s) 67, 235
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 255, 256
BseLI CCNNNNNNNGG 3 cut(s) 255, 256, 262
BseMII CTCAG 3 cut(s) 14, 177, 273
BseNI ACTGG 2 cut(s) 67, 235
BseRI GAGGAG 3 cut(s) 299, 307, 398
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 256
BslI CCNNNNNNNGG 3 cut(s) 255, 256, 262
BsnI GGCC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 3 cut(s) 47, 74, 121
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 3 cut(s) 15, 178, 274
BspLI GGNNCC 1 cut(s) 248
BspTI CTTAAG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 67, 235
BssECI CCNNGG 2 cut(s) 255, 256
BssMI GATC 3 cut(s) 47, 74, 121
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 395
Bst6I CTCTTC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 23, 186, 282
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 3 cut(s) 50, 77, 124
BstMBI GATC 3 cut(s) 47, 74, 121
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 3 cut(s) 13, 254, 255
BstV1I GCAGC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 398
BsuRI GGCC 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 246, 367
Cfr9I CCCGGG 1 cut(s) 255
Csp6I GTAC 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 2 cut(s) 56, 138
CviJI RGCY 7 cut(s) 13, 20, 69, 116, 173, 278, 407
CviKI_1 RGCY 7 cut(s) 13, 20, 69, 116, 173, 278, 407
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 3 cut(s) 23, 186, 282
DpnI GATC 3 cut(s) 49, 76, 123
DpnII GATC 3 cut(s) 47, 74, 121
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 246, 367
Eco53kI GAGCTC 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 22
FaeI CATG 2 cut(s) 59, 141
FaiI YATR 4 cut(s) 57, 139, 204, 224
FatI CATG 2 cut(s) 55, 137
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 5 cut(s) 39, 72, 194, 408, 416
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 67
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 256
HhaI GCGC 1 cut(s) 390
Hin1II CATG 2 cut(s) 59, 141
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 2 cut(s) 134, 321
HpaII CCGG 1 cut(s) 256
HphI GGTGA 2 cut(s) 301, 413
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 24, 283
Hpy188III TCNNGA 5 cut(s) 72, 119, 131, 244, 416
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4V TGCA 1 cut(s) 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 23, 186, 282
Hsp92II CATG 2 cut(s) 59, 141
HspAI GCGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 47, 74, 121
LmnI GCTCC 2 cut(s) 17, 385
LpnPI CCDG 7 cut(s) 27, 48, 144, 229, 248, 269, 383
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 5 cut(s) 39, 72, 194, 408, 416
MalI GATC 3 cut(s) 49, 76, 123
MboI GATC 3 cut(s) 47, 74, 121
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 2 cut(s) 31, 219
MluNI TGGCCA 1 cut(s) 13
MlyI GAGTC 2 cut(s) 128, 330
MmeI TCCRAC 1 cut(s) 289
Mox20I TGGCCA 1 cut(s) 13
MscI TGGCCA 1 cut(s) 13
MseI TTAA 2 cut(s) 239, 270
MslI CAYNNNNRTG 2 cut(s) 221, 396
Msp20I TGGCCA 1 cut(s) 13
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 3 cut(s) 15, 256, 257
MunI CAATTG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 2 cut(s) 256, 257
NdeII GATC 3 cut(s) 47, 74, 121
NlaIII CATG 2 cut(s) 59, 141
NlaIV GGNNCC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 2 cut(s) 128, 329
PpsI GAGTC 2 cut(s) 128, 329
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 246, 367
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
RseI CAYNNNNRTG 2 cut(s) 221, 396
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 239, 270
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 3 cut(s) 47, 74, 121
Sau96I GGNCC 2 cut(s) 246, 367
SchI GAGTC 2 cut(s) 128, 330
ScrFI CCNGG 3 cut(s) 15, 256, 257
SduI GDGCHC 1 cut(s) 22
SetI ASST 7 cut(s) 11, 22, 71, 118, 291, 409, 415
SinI GGWCC 2 cut(s) 246, 367
SmaI CCCGGG 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 221, 396
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 31, 219
SspMI CTAG 5 cut(s) 39, 72, 194, 408, 416
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 3 cut(s) 13, 254, 255
TaaI ACNGT 1 cut(s) 395
TasI AATT 2 cut(s) 31, 219
Tru1I TTAA 2 cut(s) 239, 270
Tru9I TTAA 2 cut(s) 239, 270
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 44
TspMI CCCGGG 1 cut(s) 255
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 246, 367
XbaI TCTAGA 2 cut(s) 71, 415
XmaI CCCGGG 1 cut(s) 255
XspI CTAG 5 cut(s) 39, 72, 194, 408, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.