Rh5CG282800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008165
Physical Location & Seq
Reverse (-)
30885351 .. 30885650
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG282800.1

Sequence Viewer

Length: 300 bp
ATGAAACCAAAAGCGAGGACTTCATTTTTCTTTCTTGCTGATCATGAGATTGCTTTTCAATCTTGCAGACATCATTTTGAAGAAGAACATTGCAGGCGGTATTCGAACCATTGCTTTACAGTGGTAAGTTTTAACTTGATCAAATGTTGCAGCTTGGCCACATCTTTTTTAGGAGTGAATAGGCATGTTCCATCCTTCATAGGAGCTGGTCCACCCGTCAAACATCTCTACTACCATCTTATGCCAGGTAACAGGAACCGGACGACTCCCAACTCCCTGCATTTTGTGGCTGCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.38

Weight (kDa)

9.4

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 156
AgsI TTSAA 2 cut(s) 59, 80
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 153, 206
AluI AGCT 2 cut(s) 153, 206
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 150, 290
AspS9I GGNCC 1 cut(s) 209
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 158
BbvI GCAGC 2 cut(s) 162, 277
BccI CCATC 2 cut(s) 199, 243
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 2 cut(s) 40, 138
BfaI CTAG 1 cut(s) 298
BfmI CTRYAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 151, 291
BlsI GCNGC 2 cut(s) 152, 292
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 258
Bse3DI GCAATG 2 cut(s) 88, 109
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 191
BseMI GCAATG 2 cut(s) 88, 109
BseXI GCAGC 2 cut(s) 162, 277
BshFI GGCC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 2 cut(s) 40, 138
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 88, 109
BssMI GATC 2 cut(s) 40, 138
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 2 cut(s) 43, 141
BstMBI GATC 2 cut(s) 40, 138
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 162, 277
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 2 cut(s) 44, 185
CviJI RGCY 4 cut(s) 153, 158, 206, 290
CviKI_1 RGCY 4 cut(s) 153, 158, 206, 290
DpnI GATC 2 cut(s) 42, 140
DpnII GATC 2 cut(s) 40, 138
EaeI YGGCCR 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 47, 188
FaiI YATR 4 cut(s) 45, 186, 200, 242
FatI CATG 2 cut(s) 43, 184
FbaI TGATCA 2 cut(s) 40, 138
Fnu4HI GCNGC 2 cut(s) 151, 291
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 151, 291
FspBI CTAG 1 cut(s) 298
GluI GCNGC 2 cut(s) 151, 291
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 259
Hin1II CATG 2 cut(s) 47, 188
HinfI GANTC 1 cut(s) 265
HpaII CCGG 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 5 cut(s) 66, 93, 150, 280, 293
Hsp92II CATG 2 cut(s) 47, 188
Ksp22I TGATCA 2 cut(s) 40, 138
Kzo9I GATC 2 cut(s) 40, 138
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 7 cut(s) 79, 192, 231, 238, 258, 272, 290
Lsp1109I GCAGC 2 cut(s) 162, 277
MaeI CTAG 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 42, 140
MboI GATC 2 cut(s) 40, 138
MboII GAAGA 2 cut(s) 92, 95
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 1 cut(s) 9
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 158
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
NdeII GATC 2 cut(s) 40, 138
NlaIII CATG 2 cut(s) 47, 188
NlaIV GGNNCC 1 cut(s) 257
NspI RCATGY 1 cut(s) 188
NspV TTCGAA 1 cut(s) 104
PagI TCATGA 1 cut(s) 43
PkrI GCNGC 2 cut(s) 152, 292
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 295
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 151, 291
Sau3AI GATC 2 cut(s) 40, 138
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 246
SetI ASST 3 cut(s) 155, 208, 250
SfcI CTRYAG 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 1 cut(s) 209
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 104
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 126
TseI GCWGC 2 cut(s) 150, 290
TspDTI ATGAA 3 cut(s) 12, 17, 187
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 209
XceI RCATGY 1 cut(s) 188
XspI CTAG 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.