Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008165

Physical Location & Seq

Genomic Coordinates Forward (+)

38821007 .. 38840628

Gene Structure 19622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG153800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTGGACTGACGGAGATTCCCAAACCCTCCCTCTTTCTATCAAGAATCGATTCACCACAATCCCTTTTTATCCCGATTCAATTTCCCCAGTTTACAGAAGGTTTCCGGGAGCTTTAACTACCAATTGGACTACAATGAGATCAATTCATGGAACTGCATCTATGGCTGCAAGAGATTACTATGAGACAGTTGGGGTTAGCAGGAATGCAAGTGCATCAGAAATAAAGAAAGCTTATTATGGGCTTTCAGGTGGTCTCAAGATTGATTGTACGAGAACAATCCTCGATGCATGCTGGGGTAACCCACAAGAAGGTGAGCTAAACCGAACACTCTGCAGTCTTGCGGCTGGAGGTAGGCACCCTTCTGTGGAGAGACGACCACTTTACTTTCAGGGGCACCATTCTGGTGACGACTTCGCTGCAGGTGAAGTAACTTCTTACATCTGGCGTTGCACAAAGATCCCTCCGGAGCAGTTTCTTTGCTTTGTGAGTCGAAGCATGATTAATTTGTACTTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000740 GO:0000741 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006458 GO:0006996 GO:0006997 GO:0007275 GO:0007349 GO:0008150 GO:0008219 GO:0009553 GO:0009558 GO:0009559 GO:0009561 GO:0009653 GO:0009856 GO:0009987 GO:0010197 GO:0010198 GO:0010623 GO:0012501 GO:0016043 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048229 GO:0048284 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051084 GO:0051085 GO:0051704 GO:0061024 GO:0061025 GO:0061077 GO:0071840 GO:0090174

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

173

Amino Acids

19.34

Weight (kDa)

8.62

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008165)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c23g0500821 RchiOBHm_Chr3g0490881 RchiOBHm_Chr4g0402781 RchiOBHm_Chr5g0067791 RchiOBHm_Chr6g0263771 RchiOBHm_Chr6g0276611 RchiOBHm_Chr7g0214371
rosa_roxburghii	Rroxscaffold_3G00227420 Rroxscaffold_7G00202740
rosa_samantha	Rh1BG387200 Rh1CG400700 Rh2DG528200 Rh4AG153800 Rh4BG082800 Rh5CG282800 Rh5CG390900 Rh5CG428300 Rh6CG034600 Rh6DG032300 Rh6DG176400 Rh6DG209900 Rh6DG331900 Rh6DG375100 Rh7BG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	413
AccB1I	GGYRCC	2 cut(s)	357, 396
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	1 cut(s)	454
AfaI	GTAC	2 cut(s)	271, 512
AfiI	CCNNNNNNNGG	2 cut(s)	311, 367
AgsI	TTSAA	1 cut(s)	81
AluBI	AGCT	3 cut(s)	113, 233, 319
AluI	AGCT	3 cut(s)	113, 233, 319
Alw26I	GTCTC	3 cut(s)	179, 260, 367
AlwI	GGATC	1 cut(s)	454
Aor13HI	TCCGGA	1 cut(s)	466
ApeKI	GCWGC	2 cut(s)	167, 419
AseI	ATTAAT	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	4 cut(s)	46, 326, 419, 437
BaeGI	GKGCMC	1 cut(s)	399
BanI	GGYRCC	2 cut(s)	357, 396
BarI	GAAGNNNNNNTAC	2 cut(s)	346, 378
BbvI	GCAGC	2 cut(s)	154, 406
BcgI	CGANNNNNNTGC	4 cut(s)	315, 349, 401, 435
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	179, 260, 367
BfmI	CTRYAG	2 cut(s)	334, 420
BfuAI	ACCTGC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	168, 345, 420
BlsI	GCNGC	3 cut(s)	169, 346, 421
Bme1390I	CCNGG	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	359, 398
BmrFI	CCNGG	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	3 cut(s)	167, 224, 277
BmuI	ACTGGG	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 367
Bse1I	ACTGG	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	466
BseCI	ATCGAT	1 cut(s)	49
BseLI	CCNNNNNNNGG	2 cut(s)	311, 367
BseNI	ACTGG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	2 cut(s)	154, 406
BseYI	CCCAGC	1 cut(s)	294
BshNI	GGYRCC	2 cut(s)	357, 396
BshVI	ATCGAT	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	107, 467
BslI	CCNNNNNNNGG	2 cut(s)	311, 367
BsmAI	GTCTC	3 cut(s)	179, 260, 367
BsmBI	CGTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	211
Bso31I	GGTCTC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	140, 459
BspACI	CCGC	1 cut(s)	344
BspDI	ATCGAT	1 cut(s)	49
BspEI	TCCGGA	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	359, 398
BspMAI	CTGCAG	2 cut(s)	338, 424
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	454
BspT107I	GGYRCC	2 cut(s)	357, 396
BspTNI	GGTCTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	2 cut(s)	140, 459
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	292
BstEII	GGTNACC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	143, 462
BstMAI	GTCTC	3 cut(s)	179, 260, 367
BstMBI	GATC	2 cut(s)	140, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	2 cut(s)	334, 420
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	154, 406
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
Bsu15I	ATCGAT	1 cut(s)	49
BsuTUI	ATCGAT	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	292
ClaI	ATCGAT	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	270, 511
CviAII	CATG	3 cut(s)	149, 291, 499
CviJI	RGCY	6 cut(s)	113, 167, 233, 244, 319, 347
CviKI_1	RGCY	6 cut(s)	113, 167, 233, 244, 319, 347
CviQI	GTAC	2 cut(s)	270, 511
DpnI	GATC	2 cut(s)	142, 461
DpnII	GATC	2 cut(s)	140, 459
Eco31I	GGTCTC	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	3 cut(s)	152, 294, 502
FaiI	YATR	6 cut(s)	150, 164, 183, 240, 292, 500
FatI	CATG	3 cut(s)	148, 290, 498
Fnu4HI	GCNGC	3 cut(s)	168, 345, 420
Fsp4HI	GCNGC	3 cut(s)	168, 345, 420
GluI	GCNGC	3 cut(s)	168, 345, 420
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	1 cut(s)	369
HapII	CCGG	2 cut(s)	107, 467
Hin1II	CATG	3 cut(s)	152, 294, 502
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	5 cut(s)	17, 46, 51, 77, 490
HpaII	CCGG	2 cut(s)	107, 467
HphI	GGTGA	4 cut(s)	46, 326, 419, 437
Hpy166II	GTNNAC	2 cut(s)	6, 94
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	4 cut(s)	43, 74, 259, 467
Hpy8I	GTNNAC	2 cut(s)	6, 94
HpyAV	CCTTC	3 cut(s)	93, 305, 372
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	8 cut(s)	158, 170, 209, 215, 290, 336, 422, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
Hsp92II	CATG	3 cut(s)	152, 294, 502
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	140, 459
LmnI	GCTCC	2 cut(s)	110, 469
Lsp1109I	GCAGC	2 cut(s)	154, 406
LweI	GCATC	3 cut(s)	167, 224, 277
MaeIII	GTNAC	3 cut(s)	299, 407, 430
MalI	GATC	2 cut(s)	142, 461
MboI	GATC	2 cut(s)	140, 459
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	4 cut(s)	81, 124, 144, 505
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	5 cut(s)	38, 42, 293, 344, 474
Mph1103I	ATGCAT	1 cut(s)	292
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	2 cut(s)	116, 504
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	2 cut(s)	107, 467
MspR9I	CCNGG	1 cut(s)	108
MunI	CAATTG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	140, 459
NlaIII	CATG	3 cut(s)	152, 294, 502
NlaIV	GGNNCC	2 cut(s)	359, 398
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	413
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	17, 46, 51, 77
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	169, 346, 421
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	504
PspEI	GGTNACC	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	359, 398
PstI	CTGCAG	2 cut(s)	338, 424
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	2 cut(s)	271, 512
RsaNI	GTAC	2 cut(s)	270, 511
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	116, 504
SatI	GCNGC	3 cut(s)	168, 345, 420
Sau3AI	GATC	2 cut(s)	140, 459
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	8 cut(s)	104, 115, 235, 253, 316, 321, 355, 427
SfaNI	GCATC	3 cut(s)	167, 224, 277
SfcI	CTRYAG	2 cut(s)	334, 420
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SphI	GCATGC	1 cut(s)	294
Sse9I	AATT	4 cut(s)	81, 124, 144, 505
SsiI	CCGC	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	49, 285, 493
TasI	AATT	4 cut(s)	81, 124, 144, 505
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	4 cut(s)	17, 46, 51, 77
Tru1I	TTAA	2 cut(s)	116, 504
Tru9I	TTAA	2 cut(s)	116, 504
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	167, 419
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	504
XceI	RCATGY	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.