Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008165

Physical Location & Seq

Genomic Coordinates Reverse (-)

56977410 .. 56992424

Gene Structure 15015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG375100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGAAAGCAGAGCTTGCTTCAAAAGAGAAAAGCACGGCATCTGCAGTTGCTCTGAATGCCGAGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGCTTTCAGGTGGTCTCAAGATTGATTGTACGAGAACAATCCTCGATGCATGCTGGGGTAACCCACAAGAAGGTGAGCTAAACCGAACACTCTGCAGTCTTGTGGCTGGAGGTAGGCACCCTTCTGTGGAGAGACGGCCACTTTACTTTCAGGGGCACCATTCTGATGACGACTTCGCTGCAGGTGAAGTAACTTCTTACATTTGGCGCTGCACAAAGATCCCTCCGGAGCAGTTTCTTTGCTTTGTGAGTCGAAGCATGATTAATTTGTACTTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005215 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0008565 GO:0009506 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0090150 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

9.22

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008165)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c23g0500821 RchiOBHm_Chr3g0490881 RchiOBHm_Chr4g0402781 RchiOBHm_Chr5g0067791 RchiOBHm_Chr6g0263771 RchiOBHm_Chr6g0276611 RchiOBHm_Chr7g0214371
rosa_roxburghii	Rroxscaffold_3G00227420 Rroxscaffold_7G00202740
rosa_samantha	Rh1BG387200 Rh1CG400700 Rh2DG528200 Rh4AG153800 Rh4BG082800 Rh5CG282800 Rh5CG390900 Rh5CG428300 Rh6CG034600 Rh6DG032300 Rh6DG176400 Rh6DG209900 Rh6DG331900 Rh6DG375100 Rh7BG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	2 cut(s)	246, 285
AccIII	TCCGGA	1 cut(s)	355
AclWI	GGATC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	266
AfaI	GTAC	2 cut(s)	160, 401
AfiI	CCNNNNNNNGG	3 cut(s)	79, 200, 256
AgsI	TTSAA	1 cut(s)	24
AluBI	AGCT	3 cut(s)	16, 133, 208
AluI	AGCT	3 cut(s)	16, 133, 208
Alw26I	GTCTC	2 cut(s)	149, 256
AlwI	GGATC	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	2 cut(s)	308, 339
AseI	ATTAAT	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	215, 326
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	288
BanI	GGYRCC	2 cut(s)	246, 285
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
BbvI	GCAGC	2 cut(s)	295, 326
BceAI	ACGGC	2 cut(s)	54, 281
BcgI	CGANNNNNNTGC	4 cut(s)	204, 238, 290, 324
BcoDI	GTCTC	2 cut(s)	149, 256
BfmI	CTRYAG	3 cut(s)	45, 223, 309
BfoI	RGCGCY	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	2 cut(s)	309, 340
BlsI	GCNGC	2 cut(s)	310, 341
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	3 cut(s)	102, 248, 287
BmsI	GCATC	2 cut(s)	50, 166
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 200, 256
BseAI	TCCGGA	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	79, 200, 256
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	295, 326
BseYI	CCCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	2 cut(s)	246, 285
BsiSI	CCGG	2 cut(s)	73, 356
BslI	CCNNNNNNNGG	3 cut(s)	79, 200, 256
BsmAI	GTCTC	2 cut(s)	149, 256
BsmBI	CGTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	268
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	102, 248, 287
BspMAI	CTGCAG	3 cut(s)	49, 227, 313
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	343
BspT107I	GGYRCC	2 cut(s)	246, 285
BspTNI	GGTCTC	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	18, 181
BstEII	GGTNACC	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	2 cut(s)	149, 256
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 59
BstNSI	RCATGY	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	188
BstSFI	CTRYAG	3 cut(s)	45, 223, 309
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	295, 326
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	18, 181
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	159, 400
CviAII	CATG	2 cut(s)	180, 388
CviJI	RGCY	7 cut(s)	16, 83, 122, 133, 208, 236, 268
CviKI_1	RGCY	7 cut(s)	16, 83, 122, 133, 208, 236, 268
CviQI	GTAC	2 cut(s)	159, 400
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	2 cut(s)	183, 391
FaiI	YATR	2 cut(s)	181, 389
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	2 cut(s)	179, 387
Fnu4HI	GCNGC	2 cut(s)	309, 340
Fsp4HI	GCNGC	2 cut(s)	309, 340
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	309, 340
GsaI	CCCAGC	1 cut(s)	187
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	73, 356
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	183, 391
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	67, 379
HpaII	CCGG	2 cut(s)	73, 356
HphI	GGTGA	2 cut(s)	215, 326
Hpy188I	TCNGA	2 cut(s)	57, 295
Hpy188III	TCNNGA	2 cut(s)	148, 356
HpyAV	CCTTC	2 cut(s)	194, 261
HpyCH4V	TGCA	6 cut(s)	47, 112, 179, 225, 311, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 59
Hsp92II	CATG	2 cut(s)	183, 391
HspAI	GCGC	1 cut(s)	337
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	7 cut(s)	86, 123, 169, 222, 266, 297, 369
Lsp1109I	GCAGC	2 cut(s)	295, 326
LweI	GCATC	2 cut(s)	50, 166
MaeIII	GTNAC	2 cut(s)	188, 319
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	4 cut(s)	91, 182, 233, 363
Mph1103I	ATGCAT	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	355
MseI	TTAA	2 cut(s)	93, 393
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	2 cut(s)	73, 356
Mva1269I	GAATGC	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	17, 59
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	2 cut(s)	183, 391
NlaIV	GGNNCC	3 cut(s)	102, 248, 287
NmeAIII	GCCGAG	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	302
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	2 cut(s)	310, 341
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	393
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	102, 248, 287
PspPI	GGNCC	1 cut(s)	75
PstI	CTGCAG	3 cut(s)	49, 227, 313
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	2 cut(s)	160, 401
RsaNI	GTAC	2 cut(s)	159, 400
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	93, 393
SatI	GCNGC	2 cut(s)	309, 340
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	8 cut(s)	18, 102, 135, 142, 205, 210, 244, 316
SfaNI	GCATC	2 cut(s)	50, 166
SfcI	CTRYAG	3 cut(s)	45, 223, 309
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	3 cut(s)	85, 174, 382
TasI	AATT	1 cut(s)	394
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	93, 393
Tru9I	TTAA	2 cut(s)	93, 393
TseI	GCWGC	2 cut(s)	308, 339
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	393
XceI	RCATGY	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.