Rh4BG082800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008165
Physical Location & Seq
Forward (+)
14405470 .. 14406823
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG082800.1

Sequence Viewer

Length: 321 bp
ATGACATTTAGGATGAAGCTTGGTTCCTATATTTCACTTTGGAGGAGTCTGGACTCCGGGTTCTGTATAAATAGGAGTACCCATCACTTGATTCTGCATTCTCCATCAAGAACGTGCATTGGGCATCTCGAGTTGAACTGGACGTGGCTTCTCCTCGAGTTCAATCCTCGATGCGTACTGAGGAATCCTAGAAGAAGTTTTGTGATAGCAGACTTGTGGCTGGAGGTGGATAACTTGGGGCCGAAATTCTGCACAGGGATCGTCTTGGAGCAGCTTCCCCACTATTGTGAACAAAACTTCGCAGATTTGTCCTTGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.37

Weight (kDa)

7.7

Isoelectric Point (pI)

48.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 79, 177
AgsI TTSAA 2 cut(s) 136, 163
AjiI CACGTC 1 cut(s) 144
AleI CACNNNNGTG 1 cut(s) 285
AloI GAACNNNNNNTCC 2 cut(s) 44, 76
AluBI AGCT 2 cut(s) 19, 274
AluI AGCT 2 cut(s) 19, 274
AlwI GGATC 1 cut(s) 266
Ama87I CYCGRG 2 cut(s) 128, 155
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 58
AvaI CYCGRG 2 cut(s) 128, 155
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 90, 112
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BcnI CCSGG 1 cut(s) 58
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 58
BmeT110I CYCGRG 2 cut(s) 128, 155
BmgBI CACGTC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 25, 240
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 133, 161
BpmI CTGGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 58, 143
BseXI GCAGC 1 cut(s) 283
BsgI GTGCAG 1 cut(s) 235
BshFI GGCC 1 cut(s) 241
BsiHKCI CYCGRG 2 cut(s) 128, 155
BsiSI CCGG 1 cut(s) 57
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 241
BsoBI CYCGRG 2 cut(s) 128, 155
Bsp143I GATC 1 cut(s) 258
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 25, 240
BspPI GGATC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 241
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 78, 176
CviJI RGCY 5 cut(s) 19, 148, 220, 241, 274
CviKI_1 RGCY 5 cut(s) 19, 148, 220, 241, 274
CviQI GTAC 2 cut(s) 78, 176
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 312
Eco88I CYCGRG 2 cut(s) 128, 155
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaiI YATR 2 cut(s) 30, 68
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 4 cut(s) 46, 53, 91, 184
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 290
Hpy188III TCNNGA 3 cut(s) 50, 108, 128
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 113, 143
HpyCH4V TGCA 3 cut(s) 97, 117, 252
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 2 cut(s) 113, 143
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 35, 70, 124, 206, 240
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 2 cut(s) 133, 161
MaeI CTAG 1 cut(s) 189
MaeII ACGT 2 cut(s) 113, 143
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 204
MluCI AATT 1 cut(s) 245
MlyI GAGTC 2 cut(s) 47, 55
MnlI CCTC 5 cut(s) 36, 164, 174, 177, 217
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 58
NdeII GATC 1 cut(s) 258
NlaIV GGNNCC 2 cut(s) 25, 240
OliI CACNNNNGTG 1 cut(s) 285
PaeR7I CTCGAG 2 cut(s) 128, 155
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 91, 184
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 47, 54
PpsI GAGTC 2 cut(s) 47, 54
PspN4I GGNNCC 2 cut(s) 25, 240
PspPI GGNCC 1 cut(s) 239
PspXI VCTCGAGB 1 cut(s) 155
RsaI GTAC 2 cut(s) 79, 177
RsaNI GTAC 2 cut(s) 78, 176
RseI CAYNNNNRTG 1 cut(s) 285
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 2 cut(s) 47, 55
ScrFI CCNGG 1 cut(s) 58
SetI ASST 5 cut(s) 21, 116, 146, 228, 276
SfaNI GCATC 2 cut(s) 133, 161
Sfr274I CTCGAG 2 cut(s) 128, 155
SlaI CTCGAG 2 cut(s) 128, 155
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 128, 155
SmoI CTYRAG 2 cut(s) 128, 155
Sse9I AATT 1 cut(s) 245
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 312
TaiI ACGT 2 cut(s) 116, 146
TaqI TCGA 3 cut(s) 129, 156, 169
TasI AATT 1 cut(s) 245
TfiI GAWTC 2 cut(s) 91, 184
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 29
XapI RAATTY 1 cut(s) 245
XhoI CTCGAG 2 cut(s) 128, 155
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.