Rh1CG400700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0008165
Physical Location & Seq
Forward (+)
66702477 .. 66706993
4517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG400700.1

Sequence Viewer

Length: 354 bp
ATGCTGTTATTCTTGGGTCTCAGGATGAATCAGAATGGCCTCTTGTTCCAGTTCTACCTTCATAGGGGAGAGGCAGAGACGCCCCTGGTGGAAGGCGTAGCAGTCTCGTCTTTGGAAGCAACCTCATTGATGTCTTTTGTGATCGCAGGTGAGCCAAACCGAGCGCTTTGCAGACTTGTGGCTGGAGGTAGGTACCCTTTTATAGAGAGATGGCCACTTTACTTTCAAGGCAGCATTTTGATGATGACTTTGATGCAGGTGGATAACTTGGGGCTGAAACTCTGCACGGGGATCATCTTGGAGCAGCTTCCCCACTATTGTGAACAGAACTTCGCAGATTTGTCCTTGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

5.22

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 137, 247
Acc36I ACCTGC 2 cut(s) 137, 247
Acc65I GGTACC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 192
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 194
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 84
AleI CACNNNNGTG 1 cut(s) 318
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 3 cut(s) 23, 71, 109
AlwI GGATC 1 cut(s) 299
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 2 cut(s) 37, 212
ApeKI GCWGC 2 cut(s) 231, 304
Asp718I GGTACC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 161
BalI TGGCCA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 243, 316
BccI CCATC 1 cut(s) 204
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 3 cut(s) 23, 71, 109
BfoI RGCGCY 1 cut(s) 167
BfuAI ACCTGC 2 cut(s) 137, 247
BisI GCNGC 2 cut(s) 232, 305
BlsI GCNGC 2 cut(s) 233, 306
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 84, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 84, 345
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 243, 316
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 2 cut(s) 39, 214
BshNI GGYRCC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 3 cut(s) 23, 71, 109
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 2 cut(s) 39, 214
Bso31I GGTCTC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 141, 291
BspANI GGCC 2 cut(s) 39, 214
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 194
BspMI ACCTGC 2 cut(s) 137, 247
BspPI GGATC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 84, 345
BssMI GATC 2 cut(s) 141, 291
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 144, 294
BstMAI GTCTC 3 cut(s) 23, 71, 109
BstMBI GATC 2 cut(s) 141, 291
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 243, 316
BsuRI GGCC 2 cut(s) 39, 214
BtsCI GGATG 1 cut(s) 30
BveI ACCTGC 2 cut(s) 137, 247
CfoI GCGC 1 cut(s) 166
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 6 cut(s) 39, 154, 182, 214, 274, 307
CviKI_1 RGCY 6 cut(s) 39, 154, 182, 214, 274, 307
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 143, 293
DpnII GATC 2 cut(s) 141, 291
EaeI YGGCCR 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 23
Eco47III AGCGCT 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 71
FaiI YATR 2 cut(s) 63, 203
Fnu4HI GCNGC 2 cut(s) 232, 305
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 232, 305
GlaI GCGC 1 cut(s) 165
GluI GCNGC 2 cut(s) 232, 305
GsuI CTGGAG 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 2 cut(s) 39, 214
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 28
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 68, 86
HpyCH4V TGCA 3 cut(s) 171, 256, 285
HpyF3I CTNAG 1 cut(s) 20
Hsp92I GRCGYC 1 cut(s) 80
HspAI GCGC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 141, 291
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 7 cut(s) 7, 62, 71, 98, 132, 168, 242
Lsp1109I GCAGC 2 cut(s) 243, 316
LweI GCATC 1 cut(s) 243
MalI GATC 2 cut(s) 143, 293
MboI GATC 2 cut(s) 141, 291
MlsI TGGCCA 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 214
MnlI CCTC 4 cut(s) 50, 64, 133, 179
Mox20I TGGCCA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 214
MslI CAYNNNNRTG 2 cut(s) 239, 318
Msp20I TGGCCA 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 2 cut(s) 141, 291
NlaIV GGNNCC 1 cut(s) 194
OliI CACNNNNGTG 1 cut(s) 318
PaqCI CACCTGC 2 cut(s) 137, 247
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 233, 306
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 2 cut(s) 239, 318
SatI GCNGC 2 cut(s) 232, 305
Sau3AI GATC 2 cut(s) 141, 291
ScrFI CCNGG 1 cut(s) 86
SetI ASST 7 cut(s) 60, 125, 151, 190, 194, 261, 309
SfaNI GCATC 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 239, 318
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 345
TfiI GAWTC 1 cut(s) 28
TseI GCWGC 2 cut(s) 231, 304
TspDTI ATGAA 2 cut(s) 41, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.