Rh6DG209900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008165
Physical Location & Seq
Forward (+)
37379870 .. 37402840
22971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG209900.1

Sequence Viewer

Length: 276 bp
ATGGGGATGAAGCTTGGTTCCTCTATTTCACTTTGGAGAAGGAGTCTGGACTCCGAGTTCTGTATAAATAGGAGTACCCATTACTTGATTCTGCATTCTCCATCAAGAACGTACATTGGGCCTCTCGAGTTGAACTGGATGTGGCTTCTCCTCGAGGTAATAGCTGCCATCCCAGGGAATTTTAATCTAACTCTTTATGATTTGCTGACAACAGCACCGACTGGCCGGCCTTTGTTGTTGGCTTTGCATCGACAAATTTGCTGCATATTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.36

Weight (kDa)

8.61

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 2 cut(s) 178, 255
AfaI GTAC 2 cut(s) 76, 113
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 172
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 2 cut(s) 13, 164
AluI AGCT 2 cut(s) 13, 164
Ama87I CYCGRG 2 cut(s) 125, 152
AoxI GGCC 3 cut(s) 119, 223, 227
ApeKI GCWGC 2 cut(s) 164, 261
ApoI RAATTY 2 cut(s) 178, 255
AspS9I GGNCC 1 cut(s) 119
AvaI CYCGRG 2 cut(s) 125, 152
BbvI GCAGC 2 cut(s) 151, 248
BccI CCATC 2 cut(s) 109, 176
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BciT130I CCWGG 1 cut(s) 174
BisI GCNGC 2 cut(s) 165, 262
BlsI GCNGC 2 cut(s) 166, 263
Bme1390I CCNGG 1 cut(s) 174
BmeT110I CYCGRG 2 cut(s) 125, 152
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 172, 173
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 140, 226
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 172, 173
BseGI GGATG 3 cut(s) 12, 144, 168
BseLI CCNNNNNNNGG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 140, 226
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 151, 248
BshFI GGCC 3 cut(s) 121, 225, 229
BsiHKCI CYCGRG 2 cut(s) 125, 152
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 174
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 3 cut(s) 121, 225, 229
BsoBI CYCGRG 2 cut(s) 125, 152
BspANI GGCC 3 cut(s) 121, 225, 229
BspLI GGNNCC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 140, 226
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 172, 173
Bst2UI CCWGG 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 227
BstF5I GGATG 3 cut(s) 12, 144, 168
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 2 cut(s) 151, 248
BsuRI GGCC 3 cut(s) 121, 225, 229
BtsCI GGATG 3 cut(s) 12, 144, 168
Cac8I GCNNGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 75, 112
CviJI RGCY 7 cut(s) 13, 121, 145, 164, 225, 229, 242
CviKI_1 RGCY 7 cut(s) 13, 121, 145, 164, 225, 229, 242
CviQI GTAC 2 cut(s) 75, 112
EaeI YGGCCR 1 cut(s) 223
Eco88I CYCGRG 2 cut(s) 125, 152
EcoRII CCWGG 1 cut(s) 172
FaiI YATR 3 cut(s) 65, 198, 266
Fnu4HI GCNGC 2 cut(s) 165, 262
FokI GGATG 3 cut(s) 19, 151, 155
FseI GGCCGGCC 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 165, 262
GluI GCNGC 2 cut(s) 165, 262
HaeIII GGCC 3 cut(s) 121, 225, 229
HapII CCGG 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 43, 50, 88
HpaII CCGG 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 3 cut(s) 47, 105, 125
HpyAV CCTTC 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 94, 247, 264
HpySE526I ACGT 1 cut(s) 110
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
LpnPI CCDG 6 cut(s) 32, 121, 159, 186, 207, 239
Lsp1109I GCAGC 2 cut(s) 151, 248
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 110
MluCI AATT 2 cut(s) 178, 255
MlyI GAGTC 2 cut(s) 44, 52
MnlI CCTC 4 cut(s) 31, 132, 148, 161
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 2 cut(s) 183, 274
MspI CCGG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 1 cut(s) 174
NaeI GCCGGC 1 cut(s) 227
NgoMIV GCCGGC 1 cut(s) 225
NlaIV GGNNCC 1 cut(s) 19
PaeR7I CTCGAG 2 cut(s) 125, 152
PasI CCCWGGG 1 cut(s) 173
PctI GAATGC 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 166, 263
PleI GAGTC 2 cut(s) 44, 51
PpsI GAGTC 2 cut(s) 44, 51
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 119
PspXI VCTCGAGB 1 cut(s) 152
RigI GGCCGGCC 1 cut(s) 229
RsaI GTAC 2 cut(s) 76, 113
RsaNI GTAC 2 cut(s) 75, 112
SaqAI TTAA 2 cut(s) 183, 274
SatI GCNGC 2 cut(s) 165, 262
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 2 cut(s) 44, 52
ScrFI CCNGG 1 cut(s) 174
SetI ASST 4 cut(s) 15, 113, 159, 166
SfaNI GCATC 1 cut(s) 256
Sfr274I CTCGAG 2 cut(s) 125, 152
SlaI CTCGAG 2 cut(s) 125, 152
SmlI CTYRAG 2 cut(s) 125, 152
SmoI CTYRAG 2 cut(s) 125, 152
Sse9I AATT 2 cut(s) 178, 255
StyD4I CCNGG 1 cut(s) 172
TaiI ACGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 126, 153, 250
TasI AATT 2 cut(s) 178, 255
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 183, 274
Tru9I TTAA 2 cut(s) 183, 274
TseI GCWGC 2 cut(s) 164, 261
TspDTI ATGAA 1 cut(s) 23
XapI RAATTY 2 cut(s) 178, 255
XhoI CTCGAG 2 cut(s) 125, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.