Rh5CG428300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008165
Physical Location & Seq
Reverse (-)
59341634 .. 59355057
13424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG428300.1

Sequence Viewer

Length: 495 bp
ATGATAGGTCGCCTGTGTGAGGTGCAAGGTTGCTGGGACCGGTGGCTGCTGGGAGGACAGGCCGGTCTGGCTGGTCTGGGATCGAGTGCTGCTGGGATCTTCTTCCTCCTCCGTCTGATTGCAGATGGGACTCTGGTGCTGCAGGCAGTGGCGGATTCGAGAATCGTGCATTGGGCATCTCGAGTCGAATTGGACGTGGCTTCTCCCTGGGTTTTGATTAACTGTCTCTGCTGGGATTTTTTTACTCGTCATCTTGAGTTGAATTTGGACGTGGCTTCACCTCGAGCCGTGACCATGAAACCAAAAGCAAGGACTTCATTCTTCTTTCTTGCTGATCATGAGATTGCTTTTCCATCTTGCAGACACAGTTTTGAAGAAGAGCATCACAGACACCATTTGAACCATCACTCGACAGAGGTAGTCTTAACTTCGCAAGATGTTGCACGTATTTGTCTAGGAGTGAAAAGGCATGGAGCCATTTGTTACCGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.42

Weight (kDa)

7.16

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 63
AciI CCGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 88, 104
AcsI RAATTY 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 19
AgeI ACCGGT 1 cut(s) 39
AgsI TTSAA 3 cut(s) 262, 374, 400
AjiI CACGTC 2 cut(s) 196, 271
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 2 cut(s) 88, 104
Ama87I CYCGRG 2 cut(s) 180, 282
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 46, 89, 139
ApoI RAATTY 1 cut(s) 262
AsiGI ACCGGT 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 270
AvaI CYCGRG 2 cut(s) 180, 282
AvaII GGWCC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 33, 76, 126
BccI CCATC 3 cut(s) 119, 361, 411
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 3 cut(s) 47, 90, 140
BlsI GCNGC 3 cut(s) 48, 91, 141
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 2 cut(s) 180, 282
BmgBI CACGTC 2 cut(s) 196, 271
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 38, 475
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 185, 391
BpuEI CTTGAG 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 206, 207
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse118I RCCGGY 2 cut(s) 39, 62
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 206, 207
BseLI CCNNNNNNNGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 33, 76, 126
BseYI CCCAGC 4 cut(s) 33, 49, 92, 231
BshFI GGCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 39
BsiHKCI CYCGRG 2 cut(s) 180, 282
BsiSI CCGG 2 cut(s) 40, 63
BslFI GGGAC 2 cut(s) 50, 142
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 50, 142
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 2 cut(s) 180, 282
Bsp143I GATC 3 cut(s) 80, 96, 334
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 62
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 38, 475
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 2 cut(s) 88, 104
BspQI GCTCTTC 1 cut(s) 372
BsrFI RCCGGY 2 cut(s) 39, 62
BssAI RCCGGY 2 cut(s) 39, 62
BssECI CCNNGG 2 cut(s) 206, 207
BssMI GATC 3 cut(s) 80, 96, 334
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 224, 368
Bst6I CTCTTC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 17
BstKTI GATC 3 cut(s) 83, 99, 337
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 3 cut(s) 80, 96, 334
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 33, 76, 126
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 1 cut(s) 62
BtrI CACGTC 2 cut(s) 196, 271
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 337
Cfr10I RCCGGY 2 cut(s) 39, 62
Cfr13I GGNCC 1 cut(s) 37
CspAI ACCGGT 1 cut(s) 39
CviAII CATG 3 cut(s) 295, 338, 470
CviJI RGCY 7 cut(s) 46, 62, 71, 200, 275, 287, 476
CviKI_1 RGCY 7 cut(s) 46, 62, 71, 200, 275, 287, 476
DpnI GATC 3 cut(s) 82, 98, 336
DpnII GATC 3 cut(s) 80, 96, 334
DrdI GACNNNNNNGTC 1 cut(s) 63
DseDI GACNNNNNNGTC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 37
Eco88I CYCGRG 2 cut(s) 180, 282
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 298, 341, 473
FaiI YATR 3 cut(s) 296, 339, 471
FaqI GGGAC 2 cut(s) 50, 142
FatI CATG 3 cut(s) 294, 337, 469
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 47, 90, 140
Fsp4HI GCNGC 3 cut(s) 47, 90, 140
FspBI CTAG 1 cut(s) 455
GluI GCNGC 3 cut(s) 47, 90, 140
GsaI CCCAGC 4 cut(s) 37, 53, 96, 235
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 40, 63
Hin1II CATG 3 cut(s) 298, 341, 473
HinfI GANTC 4 cut(s) 130, 155, 162, 183
HpaII CCGG 2 cut(s) 40, 63
HphI GGTGA 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 4 cut(s) 159, 180, 254, 338
HpyCH4III ACNGT 2 cut(s) 224, 368
HpyCH4IV ACGT 3 cut(s) 195, 270, 445
HpyCH4V TGCA 6 cut(s) 25, 122, 142, 169, 360, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 3 cut(s) 195, 270, 445
Hsp92II CATG 3 cut(s) 298, 341, 473
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 80, 96, 334
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 473
Lsp1109I GCAGC 3 cut(s) 33, 76, 126
LweI GCATC 2 cut(s) 185, 391
MaeI CTAG 1 cut(s) 455
MaeII ACGT 3 cut(s) 195, 270, 445
MaeIII GTNAC 2 cut(s) 289, 482
MalI GATC 3 cut(s) 82, 98, 336
MboI GATC 3 cut(s) 80, 96, 334
MboII GAAGA 5 cut(s) 91, 94, 313, 386, 389
MflI RGATCY 1 cut(s) 96
MluCI AATT 2 cut(s) 188, 262
MlyI GAGTC 2 cut(s) 124, 192
MnlI CCTC 6 cut(s) 13, 47, 116, 119, 291, 409
MseI TTAA 2 cut(s) 219, 425
MspI CCGG 2 cut(s) 40, 63
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 3 cut(s) 80, 96, 334
NlaIII CATG 3 cut(s) 298, 341, 473
NlaIV GGNNCC 2 cut(s) 38, 475
NmuCI GTSAC 1 cut(s) 289
PaeR7I CTCGAG 2 cut(s) 180, 282
PagI TCATGA 1 cut(s) 337
PasI CCCWGGG 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 2 cut(s) 155, 162
PinAI ACCGGT 1 cut(s) 39
PkrI GCNGC 3 cut(s) 48, 91, 141
PleI GAGTC 2 cut(s) 124, 191
PpsI GAGTC 2 cut(s) 124, 191
Ppu21I YACGTR 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 4 cut(s) 33, 49, 92, 231
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 38, 475
PspPI GGNCC 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 282
PstI CTGCAG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 219, 425
SatI GCNGC 3 cut(s) 47, 90, 140
Sau3AI GATC 3 cut(s) 80, 96, 334
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 2 cut(s) 124, 192
ScrFI CCNGG 1 cut(s) 208
SetI ASST 8 cut(s) 10, 24, 31, 198, 273, 283, 420, 448
SfaNI GCATC 2 cut(s) 185, 391
SfcI CTRYAG 1 cut(s) 140
Sfr274I CTCGAG 2 cut(s) 180, 282
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 2 cut(s) 180, 282
SmlI CTYRAG 3 cut(s) 180, 254, 282
SmoI CTYRAG 3 cut(s) 180, 254, 282
Sse9I AATT 2 cut(s) 188, 262
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 224, 368
TaiI ACGT 3 cut(s) 198, 273, 448
TaqI TCGA 6 cut(s) 83, 158, 181, 186, 283, 410
TasI AATT 2 cut(s) 188, 262
TfiI GAWTC 2 cut(s) 155, 162
Tru1I TTAA 2 cut(s) 219, 425
Tru9I TTAA 2 cut(s) 219, 425
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 46, 89, 139
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 306, 311
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 262
XhoI CTCGAG 2 cut(s) 180, 282
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.