RchiOBHm_Chr6g0269481

DNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010240
Physical Location & Seq
Reverse (-)
26779406 .. 26788140
8735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24174

Sequence Viewer

Length: 3822 bp
ATGGAGGTAGAATCGAATGCCCTCAAACCTATCCAGAGGCAGAAGAAAAGAAAAGCTTCTGAAGAAACCAAACCCCCAAAACCAATGGACGCAGAGACCTCCACCACCGTCAAACCCATGGAGAAACAGAAGAAGCGAAAAGCTCTGGACAAAGAGAGACGCCTCCACGCTGCAGCGCCAAAACCACCACCGTCCACGGATGATGTAGTGGAATTGAAAACCACCGAGCCACCACCCGCCGCCGCCGCCGCTTCTTCTAGCGGCGGAGCTCCTCTTCTTCCGGAGTTCCATGTCGGCGTGTTCAAGGACTTGGCTTCTGGTGATGCCGCGGTGAGAGAAGCGGCGGTGGAGGCTTTGGCGACGGAGCTGATGGAAGTGCAGAGAGCTTATGAGGGGCTTGAGAATAAGGAGTTGGTTGAAGGCGGGGGAGTCAAGTTGGAGGCCGAGAAGGATGATGGCTTGAATGACTGTGCGCCGTCGTTGAGATATGCTCTGCGGAGGCTCATTCGTGGTGTTTCTTCATCGAGAGAGTGTGCAAGACAAGGATTTGCATTAGGTTTAACTATTTTAGTAAGTACCATTCGCAGCATCAAGGTGGACTCATTGCTGAAACTCATAGTTGATTTCTTAGAGGTCACTTCATCAATGAAGGGTCAGGAGCAAAGGGATCGTCTTTTGGGTCGTTTATTTGCTTATGGTGCTCTTGGACGATCAGGAAGGCTAGCTGAGGAGTGGATTTCTGACAGAAACACTCCGCACATAAAGGAATTCACTAGTCTTCTCATTGCTCTTGCATCAAAGAAGAGATACTTGCAAGAGCCTGCTGTATCAATTATTTTAGACTCGATTGAAAAGTTGCCCCTAGAAGCGTTGTTGACTCATGTTCTAGAGGCTCCAGGACTTCATGAATGGTTTGAAGGGGCTATTGAAATTGGAAATCCTGATGCTTTGCTTTTGGCTCTGAAAATTGGAGAAAAAGTTTCTGTGGACAGTGCAAGATTTGGGAAACTTCTGCCAGACCCATTTGTTCCAAACAAACTGTTCTCTGCTGATCATCTATCTTCTGTTGCTAATAGTTTAAAGGAATCTACCTTCTGTCAGCCACGCATTCACAATGTTTGGCCTGTTCTAGTAAATATTCTGTTGCCAGATAGAGTTTTGCAGGCTGAAGATGCACTGACTATTTCAAATTCCTTAAAGAAGCACAAAAAGAATCGCAAGTCTAGCTCCTCTGATGAAGATATTGAAAAGAATTTCCAGTGCTTCTGCGAGGTGATTATTGAGGGATCCCTTCTCCCATCATCCCATGATCGCAAACACTTGGCCTTTGATGTTCTGCTTCTTCTCCTACCGAGGTTGCCTGCTTCTTACATACCAATTTGTTTGTCTTACAAAGTTGTTCAGTGCATGATTGATGTACTTCCAACAATGGATGCTTGGCTCAAGAAAATCGTGCAAAATTTTATTAAGACATTATCAGAATGGGTCGGGGATGATGATGTCAGAAGGGTTTCTGTCATTATGGCTCTACAGAAACACAGCAATGGTAGATTTGATTGTATCACACGAACAAAAACAGTTAAGGATTTGATGGCAGACTTCAGAACAGAATCGGGTTGCATGCTGTTTATTCAGAACTTGTTGAACATGTTCGTGGATGAAAGTCATGCTTCTGATGAACCTTCAGATCAGAGTATAACAACAGATGACAATTCTGAGATAGGTTCTATTGAAGACAAGGACTCTGTTGCAATGGGAAATTCTGATTTTTTGAAAACATGGATAGTGGAATCCCTCCCCTGTATATTAAAAAATTTAAAGCTAGAACCAGAAGCTAAGTTTAGGGTTCAAAAAGAAATTTTGAAGTTTCTAGCTGTTCAGGGTTTGTTCACTGCATCTCTTGGCACTGAAGTGACATCCTTTGAATTACAAGAGAAATTTAGGTGGCCAAAAGCAGCCACCTCAAGTGCTCTTTGCAGGATGTGTATTGAGCAGCTCCAGTTACTGTTGGCAAATTCTCAGAAAGGAGAAGGTCCACGTGGTTTGCCAAATCGACTCGAGTCAAATGATCTTGGCTCATATTTTATGCGGTTTCTTAGCACTCTGTGCAACATTCCTTCAATTTCTCTCTTTCGACCTTTGGATACTGAGGAAGAAAACACTTTGAAACAATTGCAAGCGATGGAAACTTCACTTTCTAAAGAGGAAAGGAATTGTGGGCTTAGCAGCGAGGCAAATAGGTTGCATGCACTAAGATACTTGCTCATCCAGCTGCTTTTGCAAATGCTCCTTCGACCGAAAGAATTCTTAGTAGCGGTGTCTGAGCTTATTATATGCTGTAAAAAGGCTTTCCCTGTTTTTGATCTTGTTGATTCCTGTGGAGAAGACAACTTAGATGGTGATGACGCTCCTGCAGTAATGGATGTTCTTGTGGATACATTACTTTCATTGCTGCCACAGTCATCAGCTCCTATGCGAACTGCTATTGAGCAGGTCTTTAAATACTTCTGTGTTGACATCACGGATGATGGTCTGCTGCGGATGTTGAGGGTCATTAGGAAGAATTTGAAACCTGCTAGACATCAGGATGCTGATAGTGAAGACATTGACGATGACGAAGATGAAGATTTTCTTAACATTGAAGAAGATGAGGTCATTGATAGAGCTGAGACTGGTGAAACAGGTGACAGTGATGAGCAGACAGACGAGTCTGAGGCCGACTCTGAGGCTGACTCTGAGGCTGTTGATGGTGTTGGGGAAGTTCCCATGGAAATTCCTGACGCTTCTGATGAATCAGATGGAGGGATGGATGATGATGCAATGTTCCGGATGGATACTTATCTTGCACGGATCTTCAAAGAGCGAAAGAATCTAGCTGGGGGTGACACTGCTCATCAGCAACTCATGCTGTTTAAGCTTCGAGTTCTTTCTTTGCTAGAAATTTACCTGCATGAAAATCCAGATAAGCCACAGGTTTTGTTGGTTTACTCAAATTTGGCTCGCGCGTTTGCTGAACCGCATACTGCAGAAAGTAGTGAACAGCTTGGACAGCGTATATGGGGAATTCTGCAAAAGAAAATATTTAAAGCAAAGGACCATCCCAAGGGTGAAGATGTGGAACTATCTACTCTAGAATCCTTGTTGCAAAGAAATTTGAAGTTGGCTTCAAAACCAATCAAGAGAAAGAAATCTGCTGCCAACCCGTCAAAGAAGAAGCAGTCAGCCTCCTGGAACCGACAGAAAATGATTGCTTCCCTTGCACAGAGTTCTACCTTCTGGATTCTGAAGATCATTGATGCAAGAAATTTTCCAGAGTCTGAGCTGCAGAGAGTTTTTGATATTTTCCAGGGTGTTCTGGTAGAATATTTCAGTAGTAAGAAGTCCCAAATCAAATCTGAATTTTTGAAAGAAATATTTAGAAGAAGGCCTTGGATAGGGCGTTATCTCTTTGGCTTCCTTTTGGAGAAATGCGGAAGTTCAAAGTCAGACTTTCGGCGAGTAGAAGCACTTGATATGGTGAGTGAAATATTGAAGTCCCCGGGCTTATCTGATGGAAGCGGCCAGGAAGCTTTGAAGAAAATTATGAAAAGCCATCTGCAAAAACTGTGTCAGTTGATAGAGCAATTGCTTACAAATATGCCAGAAAAGCAGTCAAGACGAGCTGAAGTACGGAAGTTTTGCGGGAAGATCTTTCAGATGATAGCAACCCTTAAGCTGAGCAAGTCTTTTCTCAAGAATTTAGCTCCAGATGCTCACGCCAAGTGTGAATCACAACTTGGTGATCAGTTTAAGAACTTGAAGAAGATACAGGTGAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006139 GO:0006351 GO:0006355 GO:0006360 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009058 GO:0009059 GO:0009267 GO:0009303 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0015980 GO:0016070 GO:0016072 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022900 GO:0022904 GO:0023052 GO:0031074 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032774 GO:0032922 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035556 GO:0042149 GO:0042564 GO:0042594 GO:0042790 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045333 GO:0045787 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070888 GO:0071156 GO:0071158 GO:0071496 GO:0071704 GO:0072331 GO:0072332 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097659 GO:0098781 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000209 GO:2000210 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_phi

Protein Analysis

1273

Amino Acids

142.76

Weight (kDa)

5.69

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_phi PF04931 163 - 983 1.1e-178 DNA polymerase phi
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64420
fragaria_vesca FvH4_2g11160
malus_domestica MD05G1049800.v1.1 MD10G1056900.v1.1
prunus_persica Prupe.8G075100_v2.0.a1
pyrus_communis pycom05g04160 pycom05g04170 pycom10g04380
rosa_chinensis RchiOBHm_Chr6g0269481
rosa_laevigata RLG00000013848 RLG00000013849
rosa_multiflora Rmu_ssc0000291.1_g000033
rosa_roxburghii Rroxscaffold_7G00198700
rosa_rugosa Rorug06G0048500
rosa_samantha Rh6AG168400 Rh6BG173800 Rh6CG168000 Rh6CG168100 Rh6DG160000 Rh6DG160100
rosa_wichuraiana Rw6G014500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2707
Acc36I ACCTGC 3 cut(s) 2482, 2581, 2955
AccII CGCG 3 cut(s) 329, 3003, 3005
AccIII TCCGGA 2 cut(s) 280, 2826
AclWI GGATC 4 cut(s) 675, 1281, 1294, 2858
AcoI YGGCCR 2 cut(s) 1946, 3559
AcuI CTGAAG 7 cut(s) 81, 1188, 1585, 1668, 1929, 3305, 3684
AcvI CACGTG 1 cut(s) 2039
AcyI GRCGYC 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 2106
AfaI GTAC 3 cut(s) 577, 1419, 3669
AfiI CCNNNNNNNGG 2 cut(s) 3103, 3434
AflII CTTAAG 1 cut(s) 3710
AflIII ACRYGT 1 cut(s) 1647
AhlI ACTAGT 1 cut(s) 773
AjnI CCWGG 4 cut(s) 895, 3227, 3345, 3561
AjuI GAANNNNNNNTTGG 6 cut(s) 395, 427, 3412, 3444, 3759, 3791
AleI CACNNNNGTG 1 cut(s) 1910
Alw21I GWGCWC 3 cut(s) 271, 703, 1972
Alw26I GTCTC 3 cut(s) 89, 151, 2663
AlwI GGATC 4 cut(s) 675, 1281, 1294, 2858
AlwNI CAGNNNCTG 2 cut(s) 2005, 3317
Ama87I CYCGRG 2 cut(s) 2057, 3538
Aor13HI TCCGGA 2 cut(s) 280, 2826
AoxI GGCC 7 cut(s) 441, 1121, 1323, 1946, 2715, 3425, 3559
ArsI GACNNNNNNTTYG 4 cut(s) 655, 687, 3592, 3624
Asp700I GAANNNNTTC 5 cut(s) 55, 1510, 1649, 2303, 2628
AspLEI GCGC 3 cut(s) 178, 475, 3005
AspS9I GGNCC 2 cut(s) 2033, 3094
AsuC2I CCSGG 2 cut(s) 3539, 3540
AsuNHI GCTAGC 1 cut(s) 721
AvaI CYCGRG 2 cut(s) 2057, 3538
AvaII GGWCC 2 cut(s) 2033, 3094
BalI TGGCCA 1 cut(s) 1948
BamHI GGATCC 1 cut(s) 1286
BanII GRGCYC 1 cut(s) 271
BbrPI CACGTG 1 cut(s) 2039
BbsI GAAGAC 4 cut(s) 770, 1740, 2391, 2607
Bbv12I GWGCWC 3 cut(s) 271, 703, 1972
BbvCI CCTCAGC 1 cut(s) 726
BceAI ACGGC 1 cut(s) 460
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 4 cut(s) 897, 3229, 3347, 3563
BciVI GTATCC 3 cut(s) 2137, 2428, 2827
BclI TGATCA 2 cut(s) 1051, 3781
BcnI CCSGG 2 cut(s) 3539, 3540
BcoDI GTCTC 3 cut(s) 89, 151, 2663
BcuI ACTAGT 1 cut(s) 773
BfmI CTRYAG 5 cut(s) 171, 1529, 2412, 3024, 3323
BfoI RGCGCY 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 3710
BfuAI ACCTGC 3 cut(s) 2482, 2581, 2955
BfuI GTATCC 3 cut(s) 2137, 2428, 2827
BglII AGATCT 1 cut(s) 3687
BlpI GCTNAGC 2 cut(s) 2222, 3716
Bme1390I CCNGG 6 cut(s) 897, 3229, 3347, 3539, 3540, 3563
Bme18I GGWCC 2 cut(s) 2033, 3094
BmeT110I CYCGRG 2 cut(s) 2057, 3538
BmgT120I GGNCC 2 cut(s) 2033, 3094
BmiI GGNNCC 3 cut(s) 894, 1288, 3233
BmrFI CCNGG 6 cut(s) 897, 3229, 3347, 3539, 3540, 3563
BmtI GCTAGC 1 cut(s) 725
BoxI GACNNNNGTC 1 cut(s) 2059
BpiI GAAGAC 4 cut(s) 770, 1740, 2391, 2607
BplI GAGNNNNNCTC 6 cut(s) 475, 507, 2705, 2737, 2717, 2749
BpmI CTGGAG 3 cut(s) 879, 1982, 3729
Bpu10I CCTNAGC 1 cut(s) 726
Bpu1102I GCTNAGC 2 cut(s) 2222, 3716
BpuEI CTTGAG 4 cut(s) 419, 1427, 1948, 3716
BpuMI CCSGG 2 cut(s) 3539, 3540
BsaAI YACGTR 1 cut(s) 2039
BsaBI GATNNNNATC 1 cut(s) 2838
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 89
BsaWI WCCGGW 2 cut(s) 280, 2826
BsaXI ACNNNNNCTCC 2 cut(s) 963, 993
Bsc4I CCNNNNNNNGG 2 cut(s) 3103, 3434
Bse1I ACTGG 3 cut(s) 1258, 1999, 2677
Bse3DI GCAATG 6 cut(s) 602, 783, 1549, 1758, 2447, 2826
Bse8I GATNNNNATC 1 cut(s) 2838
BseAI TCCGGA 2 cut(s) 280, 2826
BseBI CCWGG 4 cut(s) 897, 3229, 3347, 3563
BseJI GATNNNNATC 1 cut(s) 2838
BseLI CCNNNNNNNGG 2 cut(s) 3103, 3434
BseMI GCAATG 6 cut(s) 602, 783, 1549, 1758, 2447, 2826
BseNI ACTGG 3 cut(s) 1258, 1999, 2677
BseRI GAGGAG 3 cut(s) 261, 743, 1219
BseYI CCCAGC 1 cut(s) 2876
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 3 cut(s) 329, 3003, 3005
Bsh1285I CGRYCG 1 cut(s) 2297
BshFI GGCC 7 cut(s) 443, 1123, 1325, 1948, 2717, 3427, 3561
BsiEI CGRYCG 1 cut(s) 2297
BsiHKAI GWGCWC 3 cut(s) 271, 703, 1972
BsiHKCI CYCGRG 2 cut(s) 2057, 3538
BsiSI CCGG 3 cut(s) 281, 2827, 3539
BslFI GGGAC 2 cut(s) 3367, 3520
BslI CCNNNNNNNGG 2 cut(s) 3103, 3434
BsmAI GTCTC 3 cut(s) 89, 151, 2663
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 3367, 3520
BsmI GAATGC 2 cut(s) 22, 1107
BsnI GGCC 7 cut(s) 443, 1123, 1325, 1948, 2717, 3427, 3561
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 2 cut(s) 2057, 3538
Bsp1286I GDGCHC 3 cut(s) 271, 703, 1972
Bsp13I TCCGGA 2 cut(s) 280, 2826
Bsp1720I GCTNAGC 2 cut(s) 2222, 3716
Bsp19I CCATGG 2 cut(s) 117, 2766
BspANI GGCC 7 cut(s) 443, 1123, 1325, 1948, 2717, 3427, 3561
BspEI TCCGGA 2 cut(s) 280, 2826
BspFNI CGCG 3 cut(s) 329, 3003, 3005
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 3 cut(s) 894, 1288, 3233
BspMAI CTGCAG 4 cut(s) 175, 2416, 3028, 3327
BspMI ACCTGC 3 cut(s) 2482, 2581, 2955
BspOI GCTAGC 1 cut(s) 725
BspPI GGATC 4 cut(s) 675, 1281, 1294, 2858
BspTI CTTAAG 1 cut(s) 3710
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 6 cut(s) 602, 783, 1549, 1758, 2447, 2826
BsrI ACTGG 3 cut(s) 1258, 1999, 2677
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 4 cut(s) 117, 2766, 3102, 3428
Bst2UI CCWGG 4 cut(s) 897, 3229, 3347, 3563
Bst6I CTCTTC 2 cut(s) 279, 797
BstACI GRCGYC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 3710
BstAPI GCANNNNNTGC 2 cut(s) 2106, 2905
BstBAI YACGTR 1 cut(s) 2039
BstC8I GCNNGC 8 cut(s) 723, 822, 1164, 1362, 1622, 2178, 2247, 3001
BstDSI CCRYGG 4 cut(s) 117, 195, 327, 2766
BstENI CCTNNNNNAGG 1 cut(s) 3432
BstFNI CGCG 3 cut(s) 329, 3003, 3005
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 3 cut(s) 178, 475, 3005
BstMAI GTCTC 3 cut(s) 89, 151, 2663
BstMCI CGRYCG 1 cut(s) 2297
BstNI CCWGG 4 cut(s) 897, 3229, 3347, 3563
BstNSI RCATGY 3 cut(s) 1624, 1651, 2249
BstPAI GACNNNNGTC 1 cut(s) 2059
BstSCI CCNGG 6 cut(s) 895, 3227, 3345, 3537, 3538, 3561
BstSFI CTRYAG 5 cut(s) 171, 1529, 2412, 3024, 3323
BstUI CGCG 3 cut(s) 329, 3003, 3005
BstV2I GAAGAC 4 cut(s) 770, 1740, 2391, 2607
BstX2I RGATCY 3 cut(s) 1286, 2850, 3687
BstYI RGATCY 3 cut(s) 1286, 2850, 3687
BsuI GTATCC 3 cut(s) 2137, 2428, 2827
BsuRI GGCC 7 cut(s) 443, 1123, 1325, 1948, 2717, 3427, 3561
BtgI CCRYGG 4 cut(s) 117, 195, 327, 2766
BtgZI GCGATG 1 cut(s) 2195
BtsI GCAGTG 2 cut(s) 1890, 2886
BtsIMutI CAGTG 8 cut(s) 997, 1175, 1265, 1409, 1890, 1905, 2695, 2886
BveI ACCTGC 3 cut(s) 2482, 2581, 2955
Cac8I GCNNGC 8 cut(s) 723, 822, 1164, 1362, 1622, 2178, 2247, 3001
CaiI CAGNNNCTG 2 cut(s) 2005, 3317
CciI TCATGA 1 cut(s) 904
CfoI GCGC 3 cut(s) 178, 475, 3005
Cfr13I GGNCC 2 cut(s) 2033, 3094
Cfr42I CCGCGG 1 cut(s) 330
Cfr9I CCCGGG 1 cut(s) 3538
CseI GACGC 4 cut(s) 98, 168, 2414, 2789
Csp6I GTAC 3 cut(s) 576, 1418, 3668
CspCI CAANNNNNGTGG 4 cut(s) 2025, 2060, 2958, 2993
CviQI GTAC 3 cut(s) 576, 1418, 3668
DraI TTTAAA 4 cut(s) 1080, 1818, 2500, 3085
DraIII CACNNNGTG 1 cut(s) 2106
DrdI GACNNNNNNGTC 1 cut(s) 2707
DseDI GACNNNNNNGTC 1 cut(s) 2707
EaeI YGGCCR 2 cut(s) 1946, 3559
Eam1104I CTCTTC 2 cut(s) 279, 797
EarI CTCTTC 2 cut(s) 279, 797
EciI GGCGGA 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 269
Eco130I CCWWGG 4 cut(s) 117, 2766, 3102, 3428
Eco147I AGGCCT 1 cut(s) 3427
Eco24I GRGCYC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 2033, 3094
Eco53kI GAGCTC 1 cut(s) 269
Eco57I CTGAAG 7 cut(s) 81, 1188, 1585, 1668, 1929, 3305, 3684
Eco72I CACGTG 1 cut(s) 2039
Eco88I CYCGRG 2 cut(s) 2057, 3538
EcoICRI GAGCTC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 3432
EcoRI GAATTC 3 cut(s) 767, 2303, 3063
EcoRII CCWGG 4 cut(s) 895, 3227, 3345, 3561
EcoT14I CCWWGG 4 cut(s) 117, 2766, 3102, 3428
EcoT38I GRGCYC 1 cut(s) 271
ErhI CCWWGG 4 cut(s) 117, 2766, 3102, 3428
Esp3I CGTCTC 1 cut(s) 151
FaqI GGGAC 2 cut(s) 3367, 3520
FauI CCCGC 3 cut(s) 244, 416, 3674
FbaI TGATCA 2 cut(s) 1051, 3781
FriOI GRGCYC 1 cut(s) 271
GlaI GCGC 3 cut(s) 177, 474, 3004
GsaI CCCAGC 1 cut(s) 2880
GsuI CTGGAG 3 cut(s) 879, 1982, 3729
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 7 cut(s) 443, 1123, 1325, 1948, 2717, 3427, 3561
HapII CCGG 3 cut(s) 281, 2827, 3539
HgaI GACGC 4 cut(s) 98, 168, 2414, 2789
HhaI GCGC 3 cut(s) 178, 475, 3005
Hin1I GRCGYC 1 cut(s) 160
Hin6I GCGC 3 cut(s) 176, 473, 3003
HinP1I GCGC 3 cut(s) 176, 473, 3003
HincII GTYRAC 2 cut(s) 876, 2515
HindII GTYRAC 2 cut(s) 876, 2515
HindIII AAGCTT 3 cut(s) 54, 2915, 3567
HpaII CCGG 3 cut(s) 281, 2827, 3539
Hpy166II GTNNAC 9 cut(s) 195, 598, 876, 988, 1890, 2036, 2515, 2986, 3038
Hpy8I GTNNAC 9 cut(s) 195, 598, 876, 988, 1890, 2036, 2515, 2986, 3038
Hpy99I CGWCG 2 cut(s) 364, 481
HpyCH4IV ACGT 1 cut(s) 2038
HpySE526I ACGT 1 cut(s) 2038
Hsp92I GRCGYC 1 cut(s) 160
HspAI GCGC 3 cut(s) 176, 473, 3003
Kpn2I TCCGGA 2 cut(s) 280, 2826
Ksp22I TGATCA 2 cut(s) 1051, 3781
KspI CCGCGG 1 cut(s) 330
MaeII ACGT 1 cut(s) 2038
MaeIII GTNAC 5 cut(s) 634, 1912, 2001, 2684, 2882
MfeI CAATTG 2 cut(s) 2171, 3623
MflI RGATCY 3 cut(s) 1286, 2850, 3687
MhlI GDGCHC 3 cut(s) 271, 703, 1972
MlsI TGGCCA 1 cut(s) 1948
MluNI TGGCCA 1 cut(s) 1948
MmeI TCCRAC 2 cut(s) 417, 1448
Mox20I TGGCCA 1 cut(s) 1948
MroI TCCGGA 2 cut(s) 280, 2826
MroXI GAANNNNTTC 5 cut(s) 55, 1510, 1649, 2303, 2628
MscI TGGCCA 1 cut(s) 1948
MslI CAYNNNNRTG 5 cut(s) 593, 1542, 1652, 1910, 2586
Msp20I TGGCCA 1 cut(s) 1948
MspA1I CMGCKG 2 cut(s) 329, 2272
MspCI CTTAAG 1 cut(s) 3710
MspI CCGG 3 cut(s) 281, 2827, 3539
MspR9I CCNGG 6 cut(s) 897, 3229, 3347, 3539, 3540, 3563
MunI CAATTG 2 cut(s) 2171, 3623
Mva1269I GAATGC 2 cut(s) 22, 1107
MvaI CCWGG 4 cut(s) 897, 3229, 3347, 3563
MvnI CGCG 3 cut(s) 329, 3003, 3005
NciI CCSGG 2 cut(s) 3539, 3540
NcoI CCATGG 2 cut(s) 117, 2766
NheI GCTAGC 1 cut(s) 721
NlaIV GGNNCC 3 cut(s) 894, 1288, 3233
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 4 cut(s) 634, 1912, 2684, 2882
NspI RCATGY 3 cut(s) 1624, 1651, 2249
OliI CACNNNNGTG 1 cut(s) 1910
PaeI GCATGC 2 cut(s) 1624, 2249
PaeR7I CTCGAG 1 cut(s) 2057
PagI TCATGA 1 cut(s) 904
PceI AGGCCT 1 cut(s) 3427
PciI ACATGT 1 cut(s) 1647
PctI GAATGC 2 cut(s) 22, 1107
PdmI GAANNNNTTC 5 cut(s) 55, 1510, 1649, 2303, 2628
PfoI TCCNGGA 2 cut(s) 895, 3227
PmaCI CACGTG 1 cut(s) 2039
PmlI CACGTG 1 cut(s) 2039
Ppu21I YACGTR 1 cut(s) 2039
PscI ACATGT 1 cut(s) 1647
PshAI GACNNNNGTC 1 cut(s) 2059
Psp124BI GAGCTC 1 cut(s) 271
Psp6I CCWGG 4 cut(s) 895, 3227, 3345, 3561
PspCI CACGTG 1 cut(s) 2039
PspFI CCCAGC 1 cut(s) 2876
PspGI CCWGG 4 cut(s) 895, 3227, 3345, 3561
PspN4I GGNNCC 3 cut(s) 894, 1288, 3233
PspPI GGNCC 2 cut(s) 2033, 3094
PspXI VCTCGAGB 1 cut(s) 2057
PsrI GAACNNNNNNTAC 2 cut(s) 2409, 2441
PstI CTGCAG 4 cut(s) 175, 2416, 3028, 3327
PstNI CAGNNNCTG 2 cut(s) 2005, 3317
PsuI RGATCY 3 cut(s) 1286, 2850, 3687
PvuII CAGCTG 1 cut(s) 2272
RsaI GTAC 3 cut(s) 577, 1419, 3669
RsaNI GTAC 3 cut(s) 576, 1418, 3668
RseI CAYNNNNRTG 5 cut(s) 593, 1542, 1652, 1910, 2586
SacI GAGCTC 1 cut(s) 271
SacII CCGCGG 1 cut(s) 330
Sau96I GGNCC 2 cut(s) 2033, 3094
ScrFI CCNGG 6 cut(s) 897, 3229, 3347, 3539, 3540, 3563
SduI GDGCHC 3 cut(s) 271, 703, 1972
SfcI CTRYAG 5 cut(s) 171, 1529, 2412, 3024, 3323
Sfr274I CTCGAG 1 cut(s) 2057
Sfr303I CCGCGG 1 cut(s) 330
SgrBI CCGCGG 1 cut(s) 330
SinI GGWCC 2 cut(s) 2033, 3094
SlaI CTCGAG 1 cut(s) 2057
SmaI CCCGGG 1 cut(s) 3540
SmiMI CAYNNNNRTG 5 cut(s) 593, 1542, 1652, 1910, 2586
SmlI CTYRAG 6 cut(s) 398, 1442, 1963, 2057, 3710, 3731
SmoI CTYRAG 6 cut(s) 398, 1442, 1963, 2057, 3710, 3731
SpeI ACTAGT 1 cut(s) 773
SphI GCATGC 2 cut(s) 1624, 2249
SseBI AGGCCT 1 cut(s) 3427
SspI AATATT 5 cut(s) 1138, 3081, 3365, 3414, 3528
SstI GAGCTC 1 cut(s) 271
StuI AGGCCT 1 cut(s) 3427
StyD4I CCNGG 6 cut(s) 895, 3227, 3345, 3537, 3538, 3561
StyI CCWWGG 4 cut(s) 117, 2766, 3102, 3428
TaiI ACGT 1 cut(s) 2041
TaqI TCGA 8 cut(s) 14, 524, 845, 2053, 2058, 2134, 2293, 2920
TaqII GACCGA 1 cut(s) 2311
TatI WGTACW 1 cut(s) 1417
TauI GCSGC 8 cut(s) 242, 245, 248, 251, 264, 329, 344, 3561
TscAI CASTG 8 cut(s) 997, 1182, 1265, 1409, 1897, 1912, 2695, 2893
TseFI GTSAC 4 cut(s) 634, 1912, 2684, 2882
Tsp45I GTSAC 4 cut(s) 634, 1912, 2684, 2882
TspGWI ACGGA 5 cut(s) 212, 377, 2537, 2863, 3685
TspMI CCCGGG 1 cut(s) 3538
TspRI CASTG 8 cut(s) 997, 1182, 1265, 1409, 1897, 1912, 2695, 2893
Vha464I CTTAAG 1 cut(s) 3710
VpaK11BI GGWCC 2 cut(s) 2033, 3094
XagI CCTNNNNNAGG 1 cut(s) 3432
XbaI TCTAGA 2 cut(s) 886, 3130
XceI RCATGY 3 cut(s) 1624, 1651, 2249
XhoI CTCGAG 1 cut(s) 2057
XmaI CCCGGG 1 cut(s) 3538
XmnI GAANNNNTTC 5 cut(s) 55, 1510, 1649, 2303, 2628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.