Rh6DG160100

DNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010240
Physical Location & Seq
Reverse (-)
23897018 .. 23905367
8350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG160100.1

Sequence Viewer

Length: 3024 bp
ATGTCAAGTAGGAAGCTTGCGGTGTCATGTTCTAGTCCTAATACTTTCAGGATTTGCATTCCATATTTGCAGTTGCCCCTAGAAGCTTTGTTGACTCATGTTCTAGAAGCTCCAGGACTTCATGAATGGTTTGAAGGGGCTATTGAAATTGGAAATCCTGATGCTTTGCTTTTGGCTCTGAAAATTGGAGAAAAAGTTTCTGTGGACAGTGCAAGATTTGGGAAACTTCTGCCAGACCCATTTGTTCCAAACAAACTGTTCTCTGCTGATCATCTATCTTCTCTTGCTAATAGTTTAAAGGAATCTACCTTCTGTCAGCCACGCATTCACAATGTTTGGCCTGTTCTAGTAAATATTCTGTTGCCAGATAGAGTTTTGCAGGCTGAAGATGCACTGACTATTTCAAATTCCTTAAAGAAGCACAAAAAGAATCGCAAGTCTAGCTCCTCTGATGAAGATATTGCAAAGAATTTCCAGTGCTTCTGCGAGGTGATTATTGAGGGATCCCTTCTCCCATCATCCCATGATCGCAAACACTTGGCCTTTGATGTTCTGCTTCTTCTCCTACCGAGGTTGCCCGCTTCTTACATACCAATTTGTTTGTCTTACAAAGTTGTTCAGTGCATGATTGATGTACTTCCAACAATGGATGCTTGGCTCAAGAAAATTGTGCAAAATTTTATTAAGACATTATCAGAATGGGTCGGGGATGATGATGTCAGAAGGGTTTCTGTCATAATGGCTCTACAGAAACACAGCAATGGTAGATTTGATTGTATCACACGAACAAAAACAGTTAAGGATTTGATGGCAGACTTCAGAACAGAATCGGGTTGCATGCTGTTTATTCAGAACTTGTTGAACATGTTCGTGGATGAAAGTCATGCTTCTGATGAACCTTCAGATCAGAGTATAACAACAGATGACAATTCTGAGATAGGTTCTATTGAAGACAAGGACTCTGTTGCAATGGGAAATTCTGATTTTTTGAAAACATGGATAGTGGAATCCCTCCCCTGTATATTAAAAAATTTAAAGCTAGAACCAGAAGCTAAGTTTAGGGTTCAAAAAGAAATTTTGAAGTTTCTAGCTGTTCAGGGTTTGTTCACTGCATCTCTTGGCACTGAAGTGACATCCTTTGAATTACAAGAGAAATTTAGGTGGCCAAAAGCAGCCACCTCAAGTGCTCTTTGCAGGATGTGTATTGTGCAGCTCCAGTTACTGTTGGCAAATTCTCAGAAAGGAGAAGGTCCACGTGGTTTGCCAAATCGACTCGAGTCAAATGATCTTGGCTCATATTTTATGCGGTTTCTCAGCACTTTGTGCAACATTCCTTCAATTTCTCTCTTTCGACCATTGGATACCGAGGAAGAAAACACTTTGAAAAAATTGCAAGTGATGGAAACTTCACTTTCTAAAGAGGAAAGGAATTGTGGGCTTAGCAGTGAGGCAAATAGGTTGCATGCACTAAGATACTTGCTCATCCAGCTGCTTTTGCAAATGCTCCTTCGACCGAAAGAATTCTTAGTAGCGGTGTCTGAGCTTATTATATGCTGTAAAAAGGCTTTCCCCGTTTTTGATCTTGTTGATTCCTGTGGAGAAGACAACTTAGATGGTGATGACGCTCCTGCAGTAATGGATGTTCTTGTGGATACATTGCTTTCATTGCTGCCACAGTCATCAGCTCCTATGCGAACTGCTATTGAGCAGGTCTTTAAATACTTCTGTGTTGACATCACGGATGATGGTCTGCTGCGGATGTTGAGGGTCATTAGGAAGAATTTGAAACCTGCTAGACATCAGGATGCTGAAAGTGAAGACATTGACGATGACGAAGATGAAGATTTTCTCAACATTGAAGAAGATGGGGTCATTGATAGAGCTGAGACTGGTGAAACAGGTGACAGTGATGAGCAGACAGACGAGTCTGAGGCCGACTCTGAGGCTGTTGATGGTGTTGGGGAAGTTCCCATGGAAATTCCTGACGCTTCTGATGAATCAGATGGAGGGATGGATGATGATGCAATGTTCCGGATGGATACTTATCTTGCACGGATCTTCAAAGAGCGAAAGAATCTAGCTGGGGGTGACACTGCTCATCAGCAACTCATGCTGTTTAAGCTTCGAGTTCTTTCTTTGCTAGAAATTTACCTGCATGAAAATCCAGATAAGCCACAGGTTTTGTTGGTTTACTCAAATTTGGCTCGCGCATTTGCTGAACCGCATACTGCAGAAAGTAGTGAACAGCTTGGACAGCGTATATGGGGAATTCTGCAAAAGAAAATATTTAAAGCAAAGGACCATCCCAAGGGTGAAGATGTGGAACTATCCACTCTAGAATCTTTGTTGCAAAGAAATTTGAAGTTGGCTTCAAAACCAATCAAGAGAAAGAAATCTGCTGCCAACCCGTCAAAGAAGAAGCAGTCGGCCTCCTGGAACCGACAGAAAATGATTGCTTCCCTTGCACAGAGTTCTACCTTCTGGATTCTGAAGATCATTGATGCAAGAAATTTTCCAGAGTCTGAGCTGCAGAGAGTTTTTGATATTTTCCAGGGTGTTCTGGTAGAATATTTCAATAGTAAGAAGTCCCAAATCAAATCTGAATTTTTGAAAGAAATATTTAGAAGAAGGCCTTGGATAGGGCGTTATCTCTTTGGCTTCCTTTTGGAGAAATGCGGAAGTTCAAAGTCAGACTTTCGGCGAGTAGAAGCACTCGATATGGTGAGTGAAATATTGAAGTCCCCAGGCTTATCTGATGGAAGTGGCCAGGAAGCTTTGAAGAAAATTATGAAAAGCCAGCAAAAACTCTGTCAGTTGATAGAGCAATTGCTTACGAATATGCCAGAAAAGCAGTCAAGACGAGCTGAAGTACGGAAGTTTTGCGGGAAGATCTTTCAGATGATAGCAACCCTTAAGCTGAGCAAGTCTTTTCTCAAGAATTTAGCTCCAGATGCTCATGCCAAGTGTGAATCACAACTTGGTGATCAGTTTAAGAACTTGAAGAAGATACAGGTGAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006139 GO:0006351 GO:0006355 GO:0006360 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009058 GO:0009059 GO:0009267 GO:0009303 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0015980 GO:0016070 GO:0016072 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022900 GO:0022904 GO:0023052 GO:0031074 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032774 GO:0032922 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035556 GO:0042149 GO:0042564 GO:0042594 GO:0042790 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045333 GO:0045787 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070888 GO:0071156 GO:0071158 GO:0071496 GO:0071704 GO:0072331 GO:0072332 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097659 GO:0098781 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000209 GO:2000210 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_phi

Protein Analysis

1007

Amino Acids

113.67

Weight (kDa)

5.7

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_phi PF04931 33 - 718 7e-137 DNA polymerase phi
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64420
fragaria_vesca FvH4_2g11160
malus_domestica MD05G1049800.v1.1 MD10G1056900.v1.1
prunus_persica Prupe.8G075100_v2.0.a1
pyrus_communis pycom05g04160 pycom05g04170 pycom10g04380
rosa_chinensis RchiOBHm_Chr6g0269481
rosa_laevigata RLG00000013848 RLG00000013849
rosa_multiflora Rmu_ssc0000291.1_g000033
rosa_roxburghii Rroxscaffold_7G00198700
rosa_rugosa Rorug06G0048500
rosa_samantha Rh6AG168400 Rh6BG173800 Rh6CG168000 Rh6CG168100 Rh6DG160000 Rh6DG160100
rosa_wichuraiana Rw6G014500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1924
Acc36I ACCTGC 3 cut(s) 1699, 1798, 2160
AccII CGCG 1 cut(s) 2208
AccIII TCCGGA 1 cut(s) 2031
AciI CCGC 8 cut(s) 20, 579, 1306, 1532, 1756, 2222, 2676, 2883
AclWI GGATC 3 cut(s) 498, 511, 2063
AcoI YGGCCR 2 cut(s) 1163, 2764
AcuI CTGAAG 6 cut(s) 405, 802, 885, 1146, 2510, 2886
AcvI CACGTG 1 cut(s) 1256
AdeI CACNNNGTG 1 cut(s) 1323
AfaI GTAC 2 cut(s) 636, 2871
AfiI CCNNNNNNNGG 2 cut(s) 2308, 2639
AflII CTTAAG 1 cut(s) 2912
AflIII ACRYGT 1 cut(s) 864
AjnI CCWGG 5 cut(s) 112, 2432, 2550, 2743, 2766
AjuI GAANNNNNNNTTGG 4 cut(s) 2617, 2649, 2961, 2993
AleI CACNNNNGTG 1 cut(s) 1127
Alw21I GWGCWC 1 cut(s) 1189
Alw26I GTCTC 1 cut(s) 1880
AlwI GGATC 3 cut(s) 498, 511, 2063
AlwNI CAGNNNCTG 2 cut(s) 1222, 2522
Ama87I CYCGRG 1 cut(s) 1274
Aor13HI TCCGGA 1 cut(s) 2031
AoxI GGCC 7 cut(s) 338, 540, 1163, 1932, 2427, 2630, 2764
ApeKI GCWGC 7 cut(s) 1172, 1210, 1489, 1669, 1753, 2399, 2527
ArsI GACNNNNNNTTYG 2 cut(s) 2794, 2826
Asp700I GAANNNNTTC 4 cut(s) 727, 866, 1520, 1845
AspLEI GCGC 1 cut(s) 2210
AspS9I GGNCC 2 cut(s) 1250, 2299
AsuHPI GGTGA 8 cut(s) 502, 1628, 1904, 1913, 2099, 2324, 2734, 2993
AvaI CYCGRG 1 cut(s) 1274
AvaII GGWCC 2 cut(s) 1250, 2299
BalI TGGCCA 2 cut(s) 1165, 2766
BamHI GGATCC 1 cut(s) 503
BbrPI CACGTG 1 cut(s) 1256
BbsI GAAGAC 3 cut(s) 957, 1608, 1824
Bbv12I GWGCWC 1 cut(s) 1189
BbvI GCAGC 7 cut(s) 1184, 1222, 1476, 1656, 1740, 2386, 2514
BciT130I CCWGG 5 cut(s) 114, 2434, 2552, 2745, 2768
BciVI GTATCC 3 cut(s) 1354, 1645, 2032
BclI TGATCA 2 cut(s) 268, 2983
BcoDI GTCTC 1 cut(s) 1880
BfmI CTRYAG 4 cut(s) 746, 1629, 2229, 2528
BfrI CTTAAG 1 cut(s) 2912
BfuAI ACCTGC 3 cut(s) 1699, 1798, 2160
BfuI GTATCC 3 cut(s) 1354, 1645, 2032
BglII AGATCT 1 cut(s) 2889
BisI GCNGC 7 cut(s) 1173, 1211, 1490, 1670, 1754, 2400, 2528
BlpI GCTNAGC 2 cut(s) 1439, 2918
BlsI GCNGC 7 cut(s) 1174, 1212, 1491, 1671, 1755, 2401, 2529
Bme1390I CCNGG 5 cut(s) 114, 2434, 2552, 2745, 2768
Bme18I GGWCC 2 cut(s) 1250, 2299
BmeT110I CYCGRG 1 cut(s) 1274
BmgT120I GGNCC 2 cut(s) 1250, 2299
BmiI GGNNCC 2 cut(s) 505, 2438
BmrFI CCNGG 5 cut(s) 114, 2434, 2552, 2745, 2768
BmsI GCATC 8 cut(s) 151, 379, 640, 1121, 1795, 2011, 2491, 2941
BoxI GACNNNNGTC 1 cut(s) 1276
BpiI GAAGAC 3 cut(s) 957, 1608, 1824
BplI GAGNNNNNCTC 2 cut(s) 1922, 1954
BpmI CTGGAG 3 cut(s) 96, 1199, 2931
Bpu1102I GCTNAGC 2 cut(s) 1439, 2918
BpuEI CTTGAG 3 cut(s) 644, 1165, 2918
BsaAI YACGTR 1 cut(s) 1256
BsaBI GATNNNNATC 1 cut(s) 2043
BsaJI CCNNGG 7 cut(s) 569, 1365, 1971, 2307, 2551, 2633, 2743
BsaWI WCCGGW 1 cut(s) 2031
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 2308, 2639
Bse1I ACTGG 3 cut(s) 475, 1216, 1894
Bse3DI GCAATG 5 cut(s) 766, 975, 1655, 1664, 2031
Bse8I GATNNNNATC 1 cut(s) 2043
BseAI TCCGGA 1 cut(s) 2031
BseBI CCWGG 5 cut(s) 114, 2434, 2552, 2745, 2768
BseDI CCNNGG 7 cut(s) 569, 1365, 1971, 2307, 2551, 2633, 2743
BseJI GATNNNNATC 1 cut(s) 2043
BseLI CCNNNNNNNGG 2 cut(s) 2308, 2639
BseMI GCAATG 5 cut(s) 766, 975, 1655, 1664, 2031
BseMII CTCAG 9 cut(s) 924, 1250, 1327, 1530, 1875, 1920, 1932, 2514, 2909
BseNI ACTGG 3 cut(s) 475, 1216, 1894
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 7 cut(s) 1184, 1222, 1476, 1656, 1740, 2386, 2514
BseYI CCCAGC 1 cut(s) 2081
BsgI GTGCAG 1 cut(s) 1229
Bsh1236I CGCG 1 cut(s) 2208
Bsh1285I CGRYCG 1 cut(s) 1514
BshFI GGCC 7 cut(s) 340, 542, 1165, 1934, 2429, 2632, 2766
BsiEI CGRYCG 1 cut(s) 1514
BsiHKAI GWGCWC 1 cut(s) 1189
BsiHKCI CYCGRG 1 cut(s) 1274
BsiSI CCGG 1 cut(s) 2032
BslFI GGGAC 2 cut(s) 2572, 2725
BslI CCNNNNNNNGG 2 cut(s) 2308, 2639
BsmAI GTCTC 1 cut(s) 1880
BsmFI GGGAC 2 cut(s) 2572, 2725
BsmI GAATGC 2 cut(s) 57, 324
BsnI GGCC 7 cut(s) 340, 542, 1165, 1934, 2429, 2632, 2766
BsoBI CYCGRG 1 cut(s) 1274
Bsp1286I GDGCHC 1 cut(s) 1189
Bsp13I TCCGGA 1 cut(s) 2031
Bsp1720I GCTNAGC 2 cut(s) 1439, 2918
Bsp19I CCATGG 1 cut(s) 1971
BspACI CCGC 8 cut(s) 20, 579, 1306, 1532, 1756, 2222, 2676, 2883
BspANI GGCC 7 cut(s) 340, 542, 1165, 1934, 2429, 2632, 2766
BspCNI CTCAG 9 cut(s) 925, 1249, 1326, 1531, 1876, 1921, 1933, 2515, 2910
BspEI TCCGGA 1 cut(s) 2031
BspFNI CGCG 1 cut(s) 2208
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 505, 2438
BspMAI CTGCAG 3 cut(s) 1633, 2233, 2532
BspMI ACCTGC 3 cut(s) 1699, 1798, 2160
BspPI GGATC 3 cut(s) 498, 511, 2063
BspTI CTTAAG 1 cut(s) 2912
BsrDI GCAATG 5 cut(s) 766, 975, 1655, 1664, 2031
BsrI ACTGG 3 cut(s) 475, 1216, 1894
BssECI CCNNGG 7 cut(s) 569, 1365, 1971, 2307, 2551, 2633, 2743
BssT1I CCWWGG 3 cut(s) 1971, 2307, 2633
Bst2UI CCWGG 5 cut(s) 114, 2434, 2552, 2745, 2768
Bst4CI ACNGT 6 cut(s) 209, 258, 796, 1224, 1677, 1907
BstAFI CTTAAG 1 cut(s) 2912
BstAPI GCANNNNNTGC 2 cut(s) 1323, 2110
BstBAI YACGTR 1 cut(s) 1256
BstC8I GCNNGC 7 cut(s) 18, 381, 579, 839, 1464, 2206, 2798
BstDSI CCRYGG 1 cut(s) 1971
BstENI CCTNNNNNAGG 1 cut(s) 2637
BstFNI CGCG 1 cut(s) 2208
BstHHI GCGC 1 cut(s) 2210
BstMAI GTCTC 1 cut(s) 1880
BstMCI CGRYCG 1 cut(s) 1514
BstNI CCWGG 5 cut(s) 114, 2434, 2552, 2745, 2768
BstNSI RCATGY 3 cut(s) 841, 868, 1466
BstPAI GACNNNNGTC 1 cut(s) 1276
BstSCI CCNGG 5 cut(s) 112, 2432, 2550, 2743, 2766
BstSFI CTRYAG 4 cut(s) 746, 1629, 2229, 2528
BstUI CGCG 1 cut(s) 2208
BstV1I GCAGC 7 cut(s) 1184, 1222, 1476, 1656, 1740, 2386, 2514
BstV2I GAAGAC 3 cut(s) 957, 1608, 1824
BstX2I RGATCY 3 cut(s) 503, 2055, 2889
BstYI RGATCY 3 cut(s) 503, 2055, 2889
BsuI GTATCC 3 cut(s) 1354, 1645, 2032
BsuRI GGCC 7 cut(s) 340, 542, 1165, 1934, 2429, 2632, 2766
BtgI CCRYGG 1 cut(s) 1971
BtsI GCAGTG 3 cut(s) 1107, 1450, 2091
BtsIMutI CAGTG 9 cut(s) 214, 392, 482, 626, 1107, 1122, 1450, 1912, 2091
BveI ACCTGC 3 cut(s) 1699, 1798, 2160
Cac8I GCNNGC 7 cut(s) 18, 381, 579, 839, 1464, 2206, 2798
CaiI CAGNNNCTG 2 cut(s) 1222, 2522
CciI TCATGA 1 cut(s) 121
CfoI GCGC 1 cut(s) 2210
Cfr13I GGNCC 2 cut(s) 1250, 2299
CseI GACGC 2 cut(s) 1631, 1994
Csp6I GTAC 2 cut(s) 635, 2870
CspCI CAANNNNNGTGG 4 cut(s) 1242, 1277, 2163, 2198
CviQI GTAC 2 cut(s) 635, 2870
DraI TTTAAA 4 cut(s) 297, 1035, 1717, 2290
DraIII CACNNNGTG 1 cut(s) 1323
DrdI GACNNNNNNGTC 1 cut(s) 1924
DseDI GACNNNNNNGTC 1 cut(s) 1924
EaeI YGGCCR 2 cut(s) 1163, 2764
Eco130I CCWWGG 3 cut(s) 1971, 2307, 2633
Eco147I AGGCCT 1 cut(s) 2632
Eco47I GGWCC 2 cut(s) 1250, 2299
Eco57I CTGAAG 6 cut(s) 405, 802, 885, 1146, 2510, 2886
Eco72I CACGTG 1 cut(s) 1256
Eco88I CYCGRG 1 cut(s) 1274
EcoNI CCTNNNNNAGG 1 cut(s) 2637
EcoRI GAATTC 2 cut(s) 1520, 2268
EcoRII CCWGG 5 cut(s) 112, 2432, 2550, 2743, 2766
EcoT14I CCWWGG 3 cut(s) 1971, 2307, 2633
ErhI CCWWGG 3 cut(s) 1971, 2307, 2633
FalI AAGNNNNNCTT 6 cut(s) 871, 903, 2617, 2649, 2678, 2710
FaqI GGGAC 2 cut(s) 2572, 2725
FauI CCCGC 2 cut(s) 586, 2876
FbaI TGATCA 2 cut(s) 268, 2983
Fnu4HI GCNGC 7 cut(s) 1173, 1211, 1490, 1670, 1754, 2400, 2528
Fsp4HI GCNGC 7 cut(s) 1173, 1211, 1490, 1670, 1754, 2400, 2528
GlaI GCGC 1 cut(s) 2209
GluI GCNGC 7 cut(s) 1173, 1211, 1490, 1670, 1754, 2400, 2528
GsaI CCCAGC 1 cut(s) 2085
GsuI CTGGAG 3 cut(s) 96, 1199, 2931
HaeIII GGCC 7 cut(s) 340, 542, 1165, 1934, 2429, 2632, 2766
HapII CCGG 1 cut(s) 2032
HgaI GACGC 2 cut(s) 1631, 1994
HhaI GCGC 1 cut(s) 2210
Hin6I GCGC 1 cut(s) 2208
HinP1I GCGC 1 cut(s) 2208
HincII GTYRAC 2 cut(s) 93, 1732
HindII GTYRAC 2 cut(s) 93, 1732
HindIII AAGCTT 4 cut(s) 14, 84, 2120, 2772
HpaII CCGG 1 cut(s) 2032
HphI GGTGA 8 cut(s) 502, 1628, 1904, 1913, 2099, 2324, 2734, 2993
Hpy166II GTNNAC 7 cut(s) 93, 205, 1107, 1253, 1732, 2191, 2243
Hpy8I GTNNAC 7 cut(s) 93, 205, 1107, 1253, 1732, 2191, 2243
HpyCH4III ACNGT 6 cut(s) 209, 258, 796, 1224, 1677, 1907
HpyCH4IV ACGT 1 cut(s) 1255
HpySE526I ACGT 1 cut(s) 1255
HspAI GCGC 1 cut(s) 2208
Kpn2I TCCGGA 1 cut(s) 2031
Ksp22I TGATCA 2 cut(s) 268, 2983
LmnI GCTCC 7 cut(s) 115, 449, 1218, 1509, 1630, 1690, 2950
Lsp1109I GCAGC 7 cut(s) 1184, 1222, 1476, 1656, 1740, 2386, 2514
LweI GCATC 8 cut(s) 151, 379, 640, 1121, 1795, 2011, 2491, 2941
MaeII ACGT 1 cut(s) 1255
MaeIII GTNAC 4 cut(s) 1129, 1218, 1901, 2087
MfeI CAATTG 1 cut(s) 2825
MflI RGATCY 3 cut(s) 503, 2055, 2889
MhlI GDGCHC 1 cut(s) 1189
MlsI TGGCCA 2 cut(s) 1165, 2766
MluNI TGGCCA 2 cut(s) 1165, 2766
MlyI GAGTC 7 cut(s) 88, 953, 1266, 1286, 1931, 1934, 2528
MmeI TCCRAC 1 cut(s) 665
Mox20I TGGCCA 2 cut(s) 1165, 2766
MroI TCCGGA 1 cut(s) 2031
MroXI GAANNNNTTC 4 cut(s) 727, 866, 1520, 1845
MscI TGGCCA 2 cut(s) 1165, 2766
MslI CAYNNNNRTG 4 cut(s) 759, 869, 1127, 1803
Msp20I TGGCCA 2 cut(s) 1165, 2766
MspA1I CMGCKG 1 cut(s) 1489
MspCI CTTAAG 1 cut(s) 2912
MspI CCGG 1 cut(s) 2032
MspR9I CCNGG 5 cut(s) 114, 2434, 2552, 2745, 2768
MunI CAATTG 1 cut(s) 2825
Mva1269I GAATGC 2 cut(s) 57, 324
MvaI CCWGG 5 cut(s) 114, 2434, 2552, 2745, 2768
MvnI CGCG 1 cut(s) 2208
NcoI CCATGG 1 cut(s) 1971
NlaIV GGNNCC 2 cut(s) 505, 2438
NmuCI GTSAC 3 cut(s) 1129, 1901, 2087
NspI RCATGY 3 cut(s) 841, 868, 1466
OliI CACNNNNGTG 1 cut(s) 1127
PaeI GCATGC 2 cut(s) 841, 1466
PaeR7I CTCGAG 1 cut(s) 1274
PagI TCATGA 1 cut(s) 121
PceI AGGCCT 1 cut(s) 2632
PciI ACATGT 1 cut(s) 864
PctI GAATGC 2 cut(s) 57, 324
PdmI GAANNNNTTC 4 cut(s) 727, 866, 1520, 1845
PfoI TCCNGGA 2 cut(s) 112, 2432
PkrI GCNGC 7 cut(s) 1174, 1212, 1491, 1671, 1755, 2401, 2529
PleI GAGTC 7 cut(s) 88, 953, 1266, 1285, 1931, 1933, 2527
PmaCI CACGTG 1 cut(s) 1256
PmlI CACGTG 1 cut(s) 1256
PpsI GAGTC 7 cut(s) 88, 953, 1266, 1285, 1931, 1933, 2527
Ppu21I YACGTR 1 cut(s) 1256
PscI ACATGT 1 cut(s) 864
PshAI GACNNNNGTC 1 cut(s) 1276
Psp6I CCWGG 5 cut(s) 112, 2432, 2550, 2743, 2766
PspCI CACGTG 1 cut(s) 1256
PspFI CCCAGC 1 cut(s) 2081
PspGI CCWGG 5 cut(s) 112, 2432, 2550, 2743, 2766
PspN4I GGNNCC 2 cut(s) 505, 2438
PspPI GGNCC 2 cut(s) 1250, 2299
PspXI VCTCGAGB 1 cut(s) 1274
PsrI GAACNNNNNNTAC 2 cut(s) 1626, 1658
PstI CTGCAG 3 cut(s) 1633, 2233, 2532
PstNI CAGNNNCTG 2 cut(s) 1222, 2522
PsuI RGATCY 3 cut(s) 503, 2055, 2889
PvuII CAGCTG 1 cut(s) 1489
RsaI GTAC 2 cut(s) 636, 2871
RsaNI GTAC 2 cut(s) 635, 2870
RseI CAYNNNNRTG 4 cut(s) 759, 869, 1127, 1803
SatI GCNGC 7 cut(s) 1173, 1211, 1490, 1670, 1754, 2400, 2528
Sau96I GGNCC 2 cut(s) 1250, 2299
SchI GAGTC 7 cut(s) 88, 953, 1266, 1286, 1931, 1934, 2528
ScrFI CCNGG 5 cut(s) 114, 2434, 2552, 2745, 2768
SduI GDGCHC 1 cut(s) 1189
SfaNI GCATC 8 cut(s) 151, 379, 640, 1121, 1795, 2011, 2491, 2941
SfcI CTRYAG 4 cut(s) 746, 1629, 2229, 2528
Sfr274I CTCGAG 1 cut(s) 1274
SinI GGWCC 2 cut(s) 1250, 2299
SlaI CTCGAG 1 cut(s) 1274
SmiMI CAYNNNNRTG 4 cut(s) 759, 869, 1127, 1803
SmlI CTYRAG 5 cut(s) 659, 1180, 1274, 2912, 2933
SmoI CTYRAG 5 cut(s) 659, 1180, 1274, 2912, 2933
SphI GCATGC 2 cut(s) 841, 1466
SseBI AGGCCT 1 cut(s) 2632
SsiI CCGC 8 cut(s) 20, 579, 1306, 1532, 1756, 2222, 2676, 2883
SspI AATATT 5 cut(s) 355, 2286, 2570, 2619, 2733
StuI AGGCCT 1 cut(s) 2632
StyD4I CCNGG 5 cut(s) 112, 2432, 2550, 2743, 2766
StyI CCWWGG 3 cut(s) 1971, 2307, 2633
TaaI ACNGT 6 cut(s) 209, 258, 796, 1224, 1677, 1907
TaiI ACGT 1 cut(s) 1258
TaqI TCGA 6 cut(s) 1270, 1275, 1351, 1510, 2125, 2715
TaqII GACCGA 1 cut(s) 1528
TatI WGTACW 1 cut(s) 634
TscAI CASTG 9 cut(s) 214, 399, 482, 626, 1114, 1129, 1450, 1912, 2098
TseFI GTSAC 3 cut(s) 1129, 1901, 2087
TseI GCWGC 7 cut(s) 1172, 1210, 1489, 1669, 1753, 2399, 2527
Tsp45I GTSAC 3 cut(s) 1129, 1901, 2087
TspGWI ACGGA 3 cut(s) 1754, 2068, 2887
TspRI CASTG 9 cut(s) 214, 399, 482, 626, 1114, 1129, 1450, 1912, 2098
Vha464I CTTAAG 1 cut(s) 2912
VpaK11BI GGWCC 2 cut(s) 1250, 2299
XagI CCTNNNNNAGG 1 cut(s) 2637
XbaI TCTAGA 2 cut(s) 103, 2335
XceI RCATGY 3 cut(s) 841, 868, 1466
XhoI CTCGAG 1 cut(s) 1274
XmnI GAANNNNTTC 4 cut(s) 727, 866, 1520, 1845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.