Rw6G014500

DNA polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010240
Physical Location & Seq
Reverse (-)
26803914 .. 26811514
7601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G014500.1

Sequence Viewer

Length: 3807 bp
ATGGAGGTAGAATCGAATGCCCTCAAACCTATCCAGAGGCAGAAGAAAAGAAAAGCTTCTGAAGAAACCAAACCCCCAAAACCAATGGACGCAGAGACCTCCACCACCGTCAAACCCATGGAGAAACAGAAGAAGCGAAAAGCTATGGACAAAGAGAGACGCCTCCACGCTGCAGCGCCAAAACCACCACCGTCCACGGATGATGCAGTGGAATTGAAAACCACCGAGCCACCCGCCGCCGCCGCCGCTTCTTCTAGCGGCGGAGCTCCTCTTCTTCCGGAGTTCCATGTCGGCGTGTTCAAGGACTTGGCTTCTGGTGATGCCGCGGTGAGAGAAGCGGCGGTGGAGGCTTTGGCGACGGAGCTGATGGAAGTGCAGAGAGCTTATGAGGGGCTTGAGAATAAGGAGTTGGTTGAAGGCGGGGGAGTCAAGTTGGAGGCCGAGAAGGATGATGGCTTGAATGACTGTGCGCCGTCGTTGAGATATGCTCTGCGGAGGCTCATTCGTGGTGTTTCTTCATCGAGAGAGTGTGCAAGACAAGGATTTGCATTAGGTTTAACTATTTTAGTAAGTACCATTCGCAGCATCAAGGTGGACTCATTGCTGAAACTCATAGTTGATTTCTTAGAGGTCACTTCATCAATGAAGGGTCAGGAGCAAAGGGATCGTCTTTTGGGTCGTTTATTTGCTTATGGTGCTCTTGGACGATCAGGAAGACTAGCTGAGGAGTGGATTTCTGACAGAAATACTCCGCACATAAAGGAATTCACTAGTCTTCTCATTGCTCTTGCATCAAAGAAGAGATACTTGCAAGAGCCTGCTGTATCAATTATTTTAGACTCGATTGAAAAGTTGCCCCTAGAAGCTTTGTTGACTCATGTTCTAGAAGCTCCAGGACTTCATGAATGGTTTGAAGGGGCTATTGAAATTGGAAATCCTGATGCTTTGCTTTTGGCTCTGAAAATTGGAGAAAAACTTTCTGTGGACAGTGCAAGATTTGGGAAACTTCTGCCAGACCCATTTGTTCCAAACAAACTGTTCTCTGCTGATCATCTATCTTCTCTTGCTAATAGTTTAAAGGAATCTACCTTCTGTCAGCCACGCATTCACAATGTTTGGCCTGTTCTAGTAAATATTCTGTTGCCAGATAGAGTTTTGCAGGCTGAAGATGCACTGACTATTTCAAATTCCTTAAAGAAGCACAAAAAGAATCGCAAGTCTAGCTCCTCTGATGAAGATATTGCAAAGAATTTCCAGTGCTTCTGCGAGGTGATTATTGAGGGATCCCTTCTCCCATCATCCCATGATCGCAAACACTTGGCCTTTGATGTTTTGCTTCTTCTCCTACCGAGGTTGCCTGCTTCTTACATACCAATTTGTTTGTCTTACAAAGTTGTTCAGTGCATGATTGATGTACTTCCAACAATGGATGCTTGGCTCAAGAAAATTGTGCAAAATTTTATTAAGACATTATCAGAATGGGTCGGGGATGATGATGTCAGAAGGGTTTCTGTCATAATGGCTCTACAGAAACACAGCAATGGTAGATTTGATTGTATCACACGAACAAAAACAGTTAAGGATTTGATGGCAGACTTCAGAACAGAATCGGGTTGCATGCTGTTTATTCAGAACTTGTTGAACATGTTCGTGGATGAAAGTCATGCTTCTGATGAACCTTCAGATCAGAGTATAACAACAGATGACAATTCTGAGATAGGTTCTATTGAAGACAAGGACTCTGTTGCAATGGGAAATTCTGATTTTTTGAAAACATGGATAGTGGAATCCCTCCCCTGTATATTAAAAAATTTAAAGCTAGAACCAGAAGCTAAGTTTAGGGTTCAAAAAGAAATTTTGAAGTTTCTAGCTGTTCAGGGTTTGTTCACTGCATCTCTTGGCACTGAAGTGACATCCTTTGAATTACAAGAGAAATTTAGGTGGCCAAAAGCAGCCACCTCAAGTGCTCTTTGCAGGATGTGTATTGAGCAGCTCCAGTTACTGTTGGCAAATTCTCAGAAAGGAGAAGGTCCACGTGGTTTGCCAAATCGACTCGAGTCAAATGATCTTGGCTCATATTTTATGCGGTTTCTTAGCACTTTGTGCAACATTCCTTCAATTTCTCTCTTTCGACCTTTGGATACCGAGGAAGAAAACACTTTGAAAAAATTGCAAGCGATGGAAACTTCACTTTCTAAAGAGGAAAGGAATTGTGGGCTTAGCAGTGAGGCAAATAGGTTGCATGCACTAAGATACTTGCTCATCCAGCTGCTTTTGCAAATGCTCCTTCGACCGAAAGAATTCTTAGTAGCGGTGTCTGAGCTTATTATATGCTGTAAAAAGGCTTTCCCCGTTTTTGATCTTGTTGATTCCTGTGGAGAAGACAACTTAGATGGTGATGATGCTCCTGCAGTAATGGATGTTCTTGTGGATACATTGCTTTCATTGCTGCCACAGTCATCAGCTCCTATGCGAACTGCTATTGAGCAGGTCTTTAAATACTTCTGTGTTGACATCACGGATGATGGTCTGCTGCGGATGTTGAGGGTCATTAGGAAGAATTTGAAACCTGCTAGACATCAGGATGCTGATAGTGAAGACATTGACGATGACGAAGATGAAGATTTTCTTAACATTGAAGAAGATGAGGTCATTGATAGAGCTGAGACTGGTGAAACAGGTGACAGTGATGAGCAGACAGACGAGTCTGAGGCCGACTCTGAGGCTGTTGATGGTGTTGGGGAAGTTCCCATGGAAATTCCTGACGCTTCTGATGAATCAGATGGAGGGATGGATGATGATGCAATGTTCCGGATGGACACTTATCTTGCACGGATCTTCAAAGAGCGAAAGAATCTAGCTGGGGGTGACACTGCTCATCAGCAACTCATGCTGTTTAAGCTTCGAGTTCTTTCTTTGCTAGAAATTTACCTGCATGAAAATCCAGATAAGCCACAGGTTTTGTTGGTTTACTCAAATTTGGCTCGCGCGTTTGCTGAACCGCATACTGCAGAAAGTAGTGAACAGCTTGGACAGCGTATATGGGGAATTCTGCAAAAGAAAATATTTAAAGCAAAGGACCATCCCAAGGGTGAAGATGTGGAACTATCTACTCTAGAATCTTTGTTGCAAAGAAATTTGAAGTTGGCTTCAAAACCAATCAAGAGAAAGAAATCTGCTGCCAACCCGTCAAAGAAGAAGCAGTCGGCCTCCTGGAACCGACAGAAAATGATTGCTTCCCTTGCACAGAGTTCTACCTTCTGGATTCTGAAGATCATTGATGCAAGAAATTTTCCAGAGTCTGAGCTGCAGAGCGTTTTTGATATTTTCCAGGGTGTTCTGGTAGAATATTTCAATAGTAAGAAGTCCCAAATCAAATCTGAATTTTTGAAAGAAATATTTAGAAGAAGGCCTTGGATGGGGCGTTATCTCTTTGGCTTCCTTTTGGAGAAATGCGGAAGTTCAAAGTCAGACTTTCGGCGAGTAGAAGCACTCGATATGGTGAGTGAAATATTGAAGTCCCCGGGCTTATCTGATGGAAGTGGCCAGGAAGCTTTGAAGAAAATTATGAAAAGCCATCTGCAAAAACTCTGTCAGTTGATAGAGCAATTGCTTACAAATATGCCAGAAAAGCAGTCAAGACGAGCTGAAGTACGGAAGTTTTGCGGGAAGATCTTTCAGATGATAGCAACCCTTAAGCTGAGCAAGTCTTTTCTCAAGAATTTAGCTCCAGATGCTCACGCCAAGTGTGAATCACAGCTTGGTGATCAGTTTAAGAACTTGAAGAAGATACAGGTGAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006139 GO:0006351 GO:0006355 GO:0006360 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009058 GO:0009059 GO:0009267 GO:0009303 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0015980 GO:0016070 GO:0016072 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022900 GO:0022904 GO:0023052 GO:0031074 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032774 GO:0032922 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035556 GO:0042149 GO:0042564 GO:0042594 GO:0042790 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045333 GO:0045787 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070888 GO:0071156 GO:0071158 GO:0071496 GO:0071704 GO:0072331 GO:0072332 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097659 GO:0098781 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000209 GO:2000210 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_phi

Protein Analysis

1268

Amino Acids

142.2

Weight (kDa)

5.8

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_phi PF04931 162 - 978 5.1e-178 DNA polymerase phi
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64420
fragaria_vesca FvH4_2g11160
malus_domestica MD05G1049800.v1.1 MD10G1056900.v1.1
prunus_persica Prupe.8G075100_v2.0.a1
pyrus_communis pycom05g04160 pycom05g04170 pycom10g04380
rosa_chinensis RchiOBHm_Chr6g0269481
rosa_laevigata RLG00000013848 RLG00000013849
rosa_multiflora Rmu_ssc0000291.1_g000033
rosa_roxburghii Rroxscaffold_7G00198700
rosa_rugosa Rorug06G0048500
rosa_samantha Rh6AG168400 Rh6BG173800 Rh6CG168000 Rh6CG168100 Rh6DG160000 Rh6DG160100
rosa_wichuraiana Rw6G014500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2704
Acc36I ACCTGC 3 cut(s) 2479, 2578, 2940
AccII CGCG 3 cut(s) 326, 2988, 2990
AccIII TCCGGA 2 cut(s) 277, 2811
AclWI GGATC 4 cut(s) 672, 1278, 1291, 2843
AcoI YGGCCR 2 cut(s) 1943, 3544
AcuI CTGAAG 7 cut(s) 81, 1185, 1582, 1665, 1926, 3290, 3669
AcvI CACGTG 1 cut(s) 2036
AcyI GRCGYC 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 2103
AfaI GTAC 3 cut(s) 574, 1416, 3654
AfiI CCNNNNNNNGG 2 cut(s) 3088, 3419
AflII CTTAAG 1 cut(s) 3695
AflIII ACRYGT 1 cut(s) 1644
AhlI ACTAGT 1 cut(s) 770
AjnI CCWGG 4 cut(s) 892, 3212, 3330, 3546
AjuI GAANNNNNNNTTGG 6 cut(s) 392, 424, 3397, 3429, 3744, 3776
AleI CACNNNNGTG 1 cut(s) 1907
Alw21I GWGCWC 3 cut(s) 268, 700, 1969
Alw26I GTCTC 3 cut(s) 89, 151, 2660
AlwI GGATC 4 cut(s) 672, 1278, 1291, 2843
AlwNI CAGNNNCTG 2 cut(s) 2002, 3302
Ama87I CYCGRG 2 cut(s) 2054, 3523
Aor13HI TCCGGA 2 cut(s) 277, 2811
AoxI GGCC 8 cut(s) 438, 1118, 1320, 1943, 2712, 3207, 3410, 3544
ArsI GACNNNNNNTTYG 4 cut(s) 652, 684, 3577, 3609
Asp700I GAANNNNTTC 5 cut(s) 55, 1507, 1646, 2300, 2625
AspLEI GCGC 3 cut(s) 178, 472, 2990
AspS9I GGNCC 2 cut(s) 2030, 3079
AsuC2I CCSGG 2 cut(s) 3524, 3525
AvaI CYCGRG 2 cut(s) 2054, 3523
AvaII GGWCC 2 cut(s) 2030, 3079
BalI TGGCCA 2 cut(s) 1945, 3546
BamHI GGATCC 1 cut(s) 1283
BanII GRGCYC 1 cut(s) 268
BbrPI CACGTG 1 cut(s) 2036
BbsI GAAGAC 5 cut(s) 721, 767, 1737, 2388, 2604
Bbv12I GWGCWC 3 cut(s) 268, 700, 1969
BbvCI CCTCAGC 1 cut(s) 723
BceAI ACGGC 1 cut(s) 457
BcgI CGANNNNNNTGC 2 cut(s) 647, 681
BciT130I CCWGG 4 cut(s) 894, 3214, 3332, 3548
BciVI GTATCC 2 cut(s) 2134, 2425
BclI TGATCA 2 cut(s) 1048, 3766
BcnI CCSGG 2 cut(s) 3524, 3525
BcoDI GTCTC 3 cut(s) 89, 151, 2660
BcuI ACTAGT 1 cut(s) 770
BfmI CTRYAG 5 cut(s) 171, 1526, 2409, 3009, 3308
BfoI RGCGCY 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 3695
BfuAI ACCTGC 3 cut(s) 2479, 2578, 2940
BfuI GTATCC 2 cut(s) 2134, 2425
BglII AGATCT 1 cut(s) 3672
BlpI GCTNAGC 2 cut(s) 2219, 3701
Bme1390I CCNGG 6 cut(s) 894, 3214, 3332, 3524, 3525, 3548
Bme18I GGWCC 2 cut(s) 2030, 3079
BmeT110I CYCGRG 2 cut(s) 2054, 3523
BmgT120I GGNCC 2 cut(s) 2030, 3079
BmiI GGNNCC 2 cut(s) 1285, 3218
BmrFI CCNGG 6 cut(s) 894, 3214, 3332, 3524, 3525, 3548
BoxI GACNNNNGTC 1 cut(s) 2056
BpiI GAAGAC 5 cut(s) 721, 767, 1737, 2388, 2604
BplI GAGNNNNNCTC 4 cut(s) 472, 504, 2702, 2734
BpmI CTGGAG 3 cut(s) 876, 1979, 3714
Bpu10I CCTNAGC 1 cut(s) 723
Bpu1102I GCTNAGC 2 cut(s) 2219, 3701
BpuEI CTTGAG 4 cut(s) 416, 1424, 1945, 3701
BpuMI CCSGG 2 cut(s) 3524, 3525
BsaAI YACGTR 1 cut(s) 2036
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 89
BsaWI WCCGGW 2 cut(s) 277, 2811
Bsc4I CCNNNNNNNGG 2 cut(s) 3088, 3419
Bse1I ACTGG 3 cut(s) 1255, 1996, 2674
Bse3DI GCAATG 7 cut(s) 599, 780, 1546, 1755, 2435, 2444, 2811
BseAI TCCGGA 2 cut(s) 277, 2811
BseBI CCWGG 4 cut(s) 894, 3214, 3332, 3548
BseLI CCNNNNNNNGG 2 cut(s) 3088, 3419
BseMI GCAATG 7 cut(s) 599, 780, 1546, 1755, 2435, 2444, 2811
BseMII CTCAG 9 cut(s) 714, 1704, 2030, 2310, 2655, 2700, 2712, 3294, 3692
BseNI ACTGG 3 cut(s) 1255, 1996, 2674
BseRI GAGGAG 3 cut(s) 258, 740, 1216
BseYI CCCAGC 1 cut(s) 2861
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 3 cut(s) 326, 2988, 2990
Bsh1285I CGRYCG 1 cut(s) 2294
BshFI GGCC 8 cut(s) 440, 1120, 1322, 1945, 2714, 3209, 3412, 3546
BsiEI CGRYCG 1 cut(s) 2294
BsiHKAI GWGCWC 3 cut(s) 268, 700, 1969
BsiHKCI CYCGRG 2 cut(s) 2054, 3523
BsiSI CCGG 3 cut(s) 278, 2812, 3524
BslFI GGGAC 2 cut(s) 3352, 3505
BslI CCNNNNNNNGG 2 cut(s) 3088, 3419
BsmAI GTCTC 3 cut(s) 89, 151, 2660
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 3352, 3505
BsmI GAATGC 2 cut(s) 22, 1104
BsnI GGCC 8 cut(s) 440, 1120, 1322, 1945, 2714, 3209, 3412, 3546
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 2 cut(s) 2054, 3523
Bsp1286I GDGCHC 3 cut(s) 268, 700, 1969
Bsp13I TCCGGA 2 cut(s) 277, 2811
Bsp1720I GCTNAGC 2 cut(s) 2219, 3701
Bsp19I CCATGG 2 cut(s) 117, 2751
BspANI GGCC 8 cut(s) 440, 1120, 1322, 1945, 2714, 3209, 3412, 3546
BspCNI CTCAG 9 cut(s) 715, 1705, 2029, 2311, 2656, 2701, 2713, 3295, 3693
BspEI TCCGGA 2 cut(s) 277, 2811
BspFNI CGCG 3 cut(s) 326, 2988, 2990
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 2 cut(s) 1285, 3218
BspMAI CTGCAG 4 cut(s) 175, 2413, 3013, 3312
BspMI ACCTGC 3 cut(s) 2479, 2578, 2940
BspPI GGATC 4 cut(s) 672, 1278, 1291, 2843
BspTI CTTAAG 1 cut(s) 3695
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 7 cut(s) 599, 780, 1546, 1755, 2435, 2444, 2811
BsrI ACTGG 3 cut(s) 1255, 1996, 2674
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 4 cut(s) 117, 2751, 3087, 3413
Bst2UI CCWGG 4 cut(s) 894, 3214, 3332, 3548
Bst4CI ACNGT 9 cut(s) 109, 192, 467, 989, 1038, 1576, 2004, 2457, 2687
Bst6I CTCTTC 2 cut(s) 276, 794
BstACI GRCGYC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 3695
BstAPI GCANNNNNTGC 2 cut(s) 2103, 2890
BstBAI YACGTR 1 cut(s) 2036
BstC8I GCNNGC 7 cut(s) 819, 1161, 1359, 1619, 2175, 2244, 2986
BstDSI CCRYGG 4 cut(s) 117, 195, 324, 2751
BstFNI CGCG 3 cut(s) 326, 2988, 2990
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 3 cut(s) 178, 472, 2990
BstMAI GTCTC 3 cut(s) 89, 151, 2660
BstMCI CGRYCG 1 cut(s) 2294
BstNI CCWGG 4 cut(s) 894, 3214, 3332, 3548
BstNSI RCATGY 3 cut(s) 1621, 1648, 2246
BstPAI GACNNNNGTC 1 cut(s) 2056
BstSCI CCNGG 6 cut(s) 892, 3212, 3330, 3522, 3523, 3546
BstSFI CTRYAG 5 cut(s) 171, 1526, 2409, 3009, 3308
BstUI CGCG 3 cut(s) 326, 2988, 2990
BstV2I GAAGAC 5 cut(s) 721, 767, 1737, 2388, 2604
BstX2I RGATCY 3 cut(s) 1283, 2835, 3672
BstYI RGATCY 3 cut(s) 1283, 2835, 3672
BsuI GTATCC 2 cut(s) 2134, 2425
BsuRI GGCC 8 cut(s) 440, 1120, 1322, 1945, 2714, 3209, 3412, 3546
BtgI CCRYGG 4 cut(s) 117, 195, 324, 2751
BtgZI GCGATG 1 cut(s) 2192
BtsI GCAGTG 4 cut(s) 213, 1887, 2230, 2871
BveI ACCTGC 3 cut(s) 2479, 2578, 2940
Cac8I GCNNGC 7 cut(s) 819, 1161, 1359, 1619, 2175, 2244, 2986
CaiI CAGNNNCTG 2 cut(s) 2002, 3302
CciI TCATGA 1 cut(s) 901
CfoI GCGC 3 cut(s) 178, 472, 2990
Cfr13I GGNCC 2 cut(s) 2030, 3079
Cfr42I CCGCGG 1 cut(s) 327
Cfr9I CCCGGG 1 cut(s) 3523
CseI GACGC 3 cut(s) 98, 168, 2774
Csp6I GTAC 3 cut(s) 573, 1415, 3653
CspCI CAANNNNNGTGG 4 cut(s) 2022, 2057, 2943, 2978
CviQI GTAC 3 cut(s) 573, 1415, 3653
DraI TTTAAA 4 cut(s) 1077, 1815, 2497, 3070
DraIII CACNNNGTG 1 cut(s) 2103
DrdI GACNNNNNNGTC 1 cut(s) 2704
DseDI GACNNNNNNGTC 1 cut(s) 2704
EaeI YGGCCR 2 cut(s) 1943, 3544
Eam1104I CTCTTC 2 cut(s) 276, 794
EarI CTCTTC 2 cut(s) 276, 794
EciI GGCGGA 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 4 cut(s) 117, 2751, 3087, 3413
Eco147I AGGCCT 1 cut(s) 3412
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 2030, 3079
Eco53kI GAGCTC 1 cut(s) 266
Eco57I CTGAAG 7 cut(s) 81, 1185, 1582, 1665, 1926, 3290, 3669
Eco72I CACGTG 1 cut(s) 2036
Eco88I CYCGRG 2 cut(s) 2054, 3523
EcoICRI GAGCTC 1 cut(s) 266
EcoRI GAATTC 3 cut(s) 764, 2300, 3048
EcoRII CCWGG 4 cut(s) 892, 3212, 3330, 3546
EcoT14I CCWWGG 4 cut(s) 117, 2751, 3087, 3413
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 4 cut(s) 117, 2751, 3087, 3413
Esp3I CGTCTC 1 cut(s) 151
FaqI GGGAC 2 cut(s) 3352, 3505
FauI CCCGC 3 cut(s) 241, 413, 3659
FbaI TGATCA 2 cut(s) 1048, 3766
FriOI GRGCYC 1 cut(s) 268
GlaI GCGC 3 cut(s) 177, 471, 2989
GsaI CCCAGC 1 cut(s) 2865
GsuI CTGGAG 3 cut(s) 876, 1979, 3714
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 8 cut(s) 440, 1120, 1322, 1945, 2714, 3209, 3412, 3546
HapII CCGG 3 cut(s) 278, 2812, 3524
HgaI GACGC 3 cut(s) 98, 168, 2774
HhaI GCGC 3 cut(s) 178, 472, 2990
Hin1I GRCGYC 1 cut(s) 160
Hin6I GCGC 3 cut(s) 176, 470, 2988
HinP1I GCGC 3 cut(s) 176, 470, 2988
HincII GTYRAC 2 cut(s) 873, 2512
HindII GTYRAC 2 cut(s) 873, 2512
HindIII AAGCTT 4 cut(s) 54, 864, 2900, 3552
HpaII CCGG 3 cut(s) 278, 2812, 3524
Hpy166II GTNNAC 9 cut(s) 195, 595, 873, 985, 1887, 2033, 2512, 2971, 3023
Hpy8I GTNNAC 9 cut(s) 195, 595, 873, 985, 1887, 2033, 2512, 2971, 3023
Hpy99I CGWCG 2 cut(s) 361, 478
HpyCH4III ACNGT 9 cut(s) 109, 192, 467, 989, 1038, 1576, 2004, 2457, 2687
HpyCH4IV ACGT 1 cut(s) 2035
HpySE526I ACGT 1 cut(s) 2035
Hsp92I GRCGYC 1 cut(s) 160
HspAI GCGC 3 cut(s) 176, 470, 2988
Kpn2I TCCGGA 2 cut(s) 277, 2811
Ksp22I TGATCA 2 cut(s) 1048, 3766
KspI CCGCGG 1 cut(s) 327
MaeII ACGT 1 cut(s) 2035
MaeIII GTNAC 5 cut(s) 631, 1909, 1998, 2681, 2867
MfeI CAATTG 1 cut(s) 3608
MflI RGATCY 3 cut(s) 1283, 2835, 3672
MhlI GDGCHC 3 cut(s) 268, 700, 1969
MlsI TGGCCA 2 cut(s) 1945, 3546
MluNI TGGCCA 2 cut(s) 1945, 3546
MmeI TCCRAC 2 cut(s) 414, 1445
Mox20I TGGCCA 2 cut(s) 1945, 3546
MroI TCCGGA 2 cut(s) 277, 2811
MroXI GAANNNNTTC 5 cut(s) 55, 1507, 1646, 2300, 2625
MscI TGGCCA 2 cut(s) 1945, 3546
MslI CAYNNNNRTG 5 cut(s) 590, 1539, 1649, 1907, 2583
Msp20I TGGCCA 2 cut(s) 1945, 3546
MspA1I CMGCKG 2 cut(s) 326, 2269
MspCI CTTAAG 1 cut(s) 3695
MspI CCGG 3 cut(s) 278, 2812, 3524
MspR9I CCNGG 6 cut(s) 894, 3214, 3332, 3524, 3525, 3548
MunI CAATTG 1 cut(s) 3608
Mva1269I GAATGC 2 cut(s) 22, 1104
MvaI CCWGG 4 cut(s) 894, 3214, 3332, 3548
MvnI CGCG 3 cut(s) 326, 2988, 2990
NciI CCSGG 2 cut(s) 3524, 3525
NcoI CCATGG 2 cut(s) 117, 2751
NlaIV GGNNCC 2 cut(s) 1285, 3218
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 4 cut(s) 631, 1909, 2681, 2867
NspI RCATGY 3 cut(s) 1621, 1648, 2246
OliI CACNNNNGTG 1 cut(s) 1907
PaeI GCATGC 2 cut(s) 1621, 2246
PaeR7I CTCGAG 1 cut(s) 2054
PagI TCATGA 1 cut(s) 901
PceI AGGCCT 1 cut(s) 3412
PciI ACATGT 1 cut(s) 1644
PctI GAATGC 2 cut(s) 22, 1104
PdmI GAANNNNTTC 5 cut(s) 55, 1507, 1646, 2300, 2625
PfoI TCCNGGA 2 cut(s) 892, 3212
PmaCI CACGTG 1 cut(s) 2036
PmlI CACGTG 1 cut(s) 2036
Ppu21I YACGTR 1 cut(s) 2036
PscI ACATGT 1 cut(s) 1644
PshAI GACNNNNGTC 1 cut(s) 2056
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 4 cut(s) 892, 3212, 3330, 3546
PspCI CACGTG 1 cut(s) 2036
PspFI CCCAGC 1 cut(s) 2861
PspGI CCWGG 4 cut(s) 892, 3212, 3330, 3546
PspN4I GGNNCC 2 cut(s) 1285, 3218
PspPI GGNCC 2 cut(s) 2030, 3079
PspXI VCTCGAGB 1 cut(s) 2054
PsrI GAACNNNNNNTAC 2 cut(s) 2406, 2438
PstI CTGCAG 4 cut(s) 175, 2413, 3013, 3312
PstNI CAGNNNCTG 2 cut(s) 2002, 3302
PsuI RGATCY 3 cut(s) 1283, 2835, 3672
PvuII CAGCTG 1 cut(s) 2269
RsaI GTAC 3 cut(s) 574, 1416, 3654
RsaNI GTAC 3 cut(s) 573, 1415, 3653
RseI CAYNNNNRTG 5 cut(s) 590, 1539, 1649, 1907, 2583
SacI GAGCTC 1 cut(s) 268
SacII CCGCGG 1 cut(s) 327
Sau96I GGNCC 2 cut(s) 2030, 3079
ScrFI CCNGG 6 cut(s) 894, 3214, 3332, 3524, 3525, 3548
SduI GDGCHC 3 cut(s) 268, 700, 1969
SfcI CTRYAG 5 cut(s) 171, 1526, 2409, 3009, 3308
Sfr274I CTCGAG 1 cut(s) 2054
Sfr303I CCGCGG 1 cut(s) 327
SgrBI CCGCGG 1 cut(s) 327
SinI GGWCC 2 cut(s) 2030, 3079
SlaI CTCGAG 1 cut(s) 2054
SmaI CCCGGG 1 cut(s) 3525
SmiMI CAYNNNNRTG 5 cut(s) 590, 1539, 1649, 1907, 2583
SmlI CTYRAG 6 cut(s) 395, 1439, 1960, 2054, 3695, 3716
SmoI CTYRAG 6 cut(s) 395, 1439, 1960, 2054, 3695, 3716
SpeI ACTAGT 1 cut(s) 770
SphI GCATGC 2 cut(s) 1621, 2246
SseBI AGGCCT 1 cut(s) 3412
SspI AATATT 5 cut(s) 1135, 3066, 3350, 3399, 3513
SstI GAGCTC 1 cut(s) 268
StuI AGGCCT 1 cut(s) 3412
StyD4I CCNGG 6 cut(s) 892, 3212, 3330, 3522, 3523, 3546
StyI CCWWGG 4 cut(s) 117, 2751, 3087, 3413
TaaI ACNGT 9 cut(s) 109, 192, 467, 989, 1038, 1576, 2004, 2457, 2687
TaiI ACGT 1 cut(s) 2038
TaqI TCGA 9 cut(s) 14, 521, 842, 2050, 2055, 2131, 2290, 2905, 3495
TaqII GACCGA 1 cut(s) 2308
TatI WGTACW 1 cut(s) 1414
TauI GCSGC 7 cut(s) 239, 242, 245, 248, 261, 326, 341
TseFI GTSAC 4 cut(s) 631, 1909, 2681, 2867
Tsp45I GTSAC 4 cut(s) 631, 1909, 2681, 2867
TspGWI ACGGA 5 cut(s) 212, 374, 2534, 2848, 3670
TspMI CCCGGG 1 cut(s) 3523
Vha464I CTTAAG 1 cut(s) 3695
VpaK11BI GGWCC 2 cut(s) 2030, 3079
XbaI TCTAGA 2 cut(s) 883, 3115
XceI RCATGY 3 cut(s) 1621, 1648, 2246
XhoI CTCGAG 1 cut(s) 2054
XmaI CCCGGG 1 cut(s) 3523
XmnI GAANNNNTTC 5 cut(s) 55, 1507, 1646, 2300, 2625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.