RH6CG168100

DNA polymerase

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0010240
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG168100.1

Sequence Viewer

Length: 3801 bp
ATGGAGGTAGAATCGAATGCGCTCAAACCTATCCAGAGCCAGAAGAAAAGAAAAGCTTCTGAAGAAACCAAACCCCCAAAACCAATGGACGCAGAGACCTCCACCACCGTCAAACCCATGGAGAAACAGAAGAAGCGAAAAGCTATGGACAAAGAGAGACGCCTCCACGCTGCGGCGCCAAAACCACCACCGTCCACGGATGATGTGGTGGAATTGAAAACCACCGAGCCACCCGCCGCCGCCGCTTCTTCTAGCGGCGGAGCTCCTCTTCTTCCGGAGTTCCATGTCGGCGTGTTCAAGGACTTGGCTTCTGGTGATGCCGCGTTGAGAGAAGCGGCGGTGGAGGCTTTGGCGACGGAGCTGATGGAAGTCCAGAGAGCTTATGAGGAGCTTGAGAATAAGGAGTTGGTTGAAGGCGGGGGAGTCAAGTTGGAGGCCGAGAAGGATGATGGCTTGAATGACTGTGCGCCGTCGTTGAGATATGCTCTGCGGAGGCTCATTCGTGGTGTTTCTTCATCGAGAGAGTGTGCAAGACAAGGATTTTCATTAGGTTTAACTATTTTAGTAAGTACCATTCGCAGCATCAAGATGGACTCATTGCTGAAACTCATAGTTGATTTCTTAGAGGTCACTTCATCAATGAAGGGTCAGGAGCAAAGGGATCGTCTTTTGGGTCGTTTATTTGCTTATGGTGCTCTTGGACGATCAGGAAGACTAGCTGAGGAGTGGATTTCTGACAGAAATACTCCGCACATAAAGGAATTCACTAGTCTTCTCATTGCTCTTGCATCAAAGAAGAGATACTTGCAAGAGCCTGCTGTATCAATTATTTTAGACTCGATTGAAAAGTTGCCCCTAGAAGCTTTGTTGACTCATGTTCTAGAAGCTCCAGGACTTCATGAATGGTTTGAAGGGGCTATTGAAATTGGAAATCCTGATGCTTTGCTTTTGGCTCTGAAAATTGGAGAAAAAGTTTCTGTGGACAGTGCAAGATTTGGGAAACTTCTGCCAGACCCATTTGTTCCAAACAAACTGTTCTCTGCTGATCATCTATCTTCTCTTGCTAATAGTTTAAAGGAATCTACCTTCTGTCAGCCACGCATTCACAATGTTTGGCCTGTTCTAGTAAATATTCTGTTGCCAGATAGAGTTTTGCAGGCTGAAGATGCACTGACTATTTCAAATTCCTTAAAGAAGCACAAAAAGAATCGCAAGTCTAGCTCCTCTGATGAAGATATTGCAAAGAATTTCCAGTGCTTCTGCGAGGTGATTATTGAGGGATCCCTTCTCCCATCATCCCATGATCGCAAACACTTGGCCTTTGATGTTCTGCTTCTTCTCCTACCGAGGTTGCCCGCTTCTTACATACCAATTTGTTTGTCTTACAAAGTTGTTCAGTGCATGATTGATGTACTTCCAACAATGGATGCTTGGCTCAAGAAAATTGTGCAAAATTTTATTAAGACATTATCAGAATGGGTCGGGGATGATGATGTCAGAAGGGTTTCTGTCATAATGGCTCTACAGAAACACAGCAATGGTAGATTTGATTGTATCACACGAACAAAAACAGTTAAGGATTTGATGGCAGACTTCAGAACAGAATCGGGTTGCATGCTGTTTATTCAGAACTTGTTGAACATGTTCGTGGATGAAAGTCATGCTTCTGATGAACCTTCAGATCAGAGTATAACAACAGATGACAATTCTGAGATAGGTTCTATTGAAGACAAGGACTCTGTTGCAATGGGAAATTCTGATTTTTTGAAAACATGGATAGTGGAATCCCTCCCCTGTATATTAAAAAATTTAAAGCTAGAACCAGAAGCTAAGTTTAGGGTTCAAAAAGAAATTTTGAAGTTTCTAGCTGTTCAGGGTTTGTTCACTGCATCTCTTGGCACTGAAGTGACATCCTTTGAATTACAAGAGAAATTTAGGTGGCCAAAAGCAGCCACCTCAAGTGCTCTTTGCAGGATGTGTATTGTGCAGCTCCAGTTACTGTTGGCAAATTCTCAGAAAGGAGAAGGTCCACGTGGTTTGCCAAATCGACTCGAGTCAAATGATCTTGGCTCATATTTTATGCGGTTTCTCAGCACTTTGTGCAACATTCCTTCAATTTCTCTCTTTCGACCATTGGATACCGAGGAAGAAAACACTTTGAAAAAATTGCAAGTGATGGAAACTTCACTTTCTAAAGAGGAAAGGAATTGTGGGCTTAGCAGTGAGGCAAATAGGTTGCATGCACTAAGATACTTGCTCATCCAGCTGCTTTTGCAAATGCTCCTTCGACCGAAAGAATTCTTAGTAGCGGTGTCTGAGCTTATTATATGCTGTAAAAAGGCTTTCCCCGTTTTTGATCTTGTTGATTCCTGTGGAGAAGACAACTTAGATGGTGATGACGCTCCTGCAGTAATGGATGTTCTTGTGGATACATTGCTTTCATTGCTGCCACAGTCATCAGCTCCTATGCGAACTGCTATTGAGCAGGTCTTTAAATACTTCTGTGTTGACATCACGGATGATGGTCTGCTGCGGATGTTGAGGGTCATTAGGAAGAATTTGAAACCTGCTAGACATCAGGATGCTGAAAGTGAAGACATTGACGATGACGAAGATGAAGATTTTCTCAACATTGAAGAAGATGGGGTCATTGATAGAGCTGAGACTGGTGAAACAGGTGACAGTGATGAGCAGACAGACGAGTCTGAGGCCGACTCTGAGGCTGTTGATGGTGTTGGGGAAGTTCCCATGGAAATTCCTGACGCTTCTGATGAATCAGATGGAGGGATGGATGATGATGCAATGTTCCGGATGGATACTTATCTTGCACGGATCTTCAAAGAGCGAAAGAATCTAGCTGGGGGTGACACTGCTCATCAGCAACTCATGCTGTTTAAGCTTCGAGTTCTTTCTTTGCTAGAAATTTACCTGCATGAAAATCCAGATAAGCCACAGGTTTTGTTGGTTTACTCAAATTTGGCTCGCGCATTTGCTGAACCGCATACTGCAGAAAGTAGTGAACAGCTTGGACAGCGTATATGGGGAATTCTGCAAAAGAAAATATTTAAAGCAAAGGACCATCCCAAGGGTGAAGATGTGGAACTATCCACTCTAGAATCTTTGTTGCAAAGAAATTTGAAGTTGGCTTCAAAACCAATCAAGAGAAAGAAATCTGCTGCCAACCCGTCAAAGAAGAAGCAGTCGGCCTCCTGGAACCGACAGAAAATGATTGCTTCCCTTGCACAGAGTTCTACCTTCTGGATTCTGAAGATCATTGATGCAAGAAATTTTCCAGAGTCTGAGCTGCAGAGAGTTTTTGATATTTTCCAGGGTGTTCTGGTAGAATATTTCAATAGTAAGAAGTCCCAAATCAAATCTGAATTTTTGAAAGAAATATTTAGAAGAAGGCCTTGGATAGGGCGTTATCTCTTTGGCTTCCTTTTGGAGAAATGCGGAAGTTCAAAGTCAGACTTTCGGCGAGTAGAAGCACTCGATATGGTGAGTGAAATATTGAAGTCCCCAGGCTTATCTGATGGAAGTGGCCAGGAAGCTTTGAAGAAAATTATGAAAAGCCAGCAAAAACTCTGTCAGTTGATAGAGCAATTGCTTACGAATATGCCAGAAAAGCAGTCAAGACGAGCTGAAGTACGGAAGTTTTGCGGGAAGATCTTTCAGATGATAGCAACCCTTAAGCTGAGCAAGTCTTTTCTCAAGAATTTAGCTCCAGATGCTCATGCCAAGTGTGAATCACAACTTGGTGATCAGTTTAAGAACTTGAAGAAGATACAGGTGAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000182 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006139 GO:0006351 GO:0006355 GO:0006360 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009058 GO:0009059 GO:0009267 GO:0009303 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0015980 GO:0016070 GO:0016072 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022900 GO:0022904 GO:0023052 GO:0031074 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032774 GO:0032922 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035556 GO:0042149 GO:0042564 GO:0042594 GO:0042790 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045333 GO:0045787 GO:0045892 GO:0045934 GO:0046483 GO:0046872 GO:0046914 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0051726 GO:0055114 GO:0060255 GO:0065007 GO:0070013 GO:0070888 GO:0071156 GO:0071158 GO:0071496 GO:0071704 GO:0072331 GO:0072332 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:0097190 GO:0097193 GO:0097659 GO:0098781 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2000209 GO:2000210 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_phi

Protein Analysis

1266

Amino Acids

142.07

Weight (kDa)

5.82

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_phi PF04931 161 - 977 1.4e-176 DNA polymerase phi
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64420
fragaria_vesca FvH4_2g11160
malus_domestica MD05G1049800.v1.1 MD10G1056900.v1.1
prunus_persica Prupe.8G075100_v2.0.a1
pyrus_communis pycom05g04160 pycom05g04170 pycom10g04380
rosa_chinensis RchiOBHm_Chr6g0269481
rosa_laevigata RLG00000013848 RLG00000013849
rosa_multiflora Rmu_ssc0000291.1_g000033
rosa_roxburghii Rroxscaffold_7G00198700
rosa_rugosa Rorug06G0048500
rosa_samantha Rh6AG168400 Rh6BG173800 Rh6CG168000 Rh6CG168100 Rh6DG160000 Rh6DG160100
rosa_wichuraiana Rw6G014500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2701
Acc36I ACCTGC 3 cut(s) 2476, 2575, 2937
AccB1I GGYRCC 1 cut(s) 175
AccII CGCG 2 cut(s) 323, 2985
AccIII TCCGGA 2 cut(s) 274, 2808
AclWI GGATC 4 cut(s) 669, 1275, 1288, 2840
AcoI YGGCCR 2 cut(s) 1940, 3541
AcuI CTGAAG 7 cut(s) 81, 1182, 1579, 1662, 1923, 3287, 3663
AcvI CACGTG 1 cut(s) 2033
AcyI GRCGYC 2 cut(s) 160, 176
AdeI CACNNNGTG 1 cut(s) 2100
AfaI GTAC 3 cut(s) 571, 1413, 3648
AfiI CCNNNNNNNGG 3 cut(s) 172, 3085, 3416
AflII CTTAAG 1 cut(s) 3689
AflIII ACRYGT 1 cut(s) 1641
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 5 cut(s) 889, 3209, 3327, 3520, 3543
AjuI GAANNNNNNNTTGG 6 cut(s) 389, 421, 3394, 3426, 3738, 3770
AleI CACNNNNGTG 1 cut(s) 1904
Alw21I GWGCWC 3 cut(s) 265, 697, 1966
Alw26I GTCTC 3 cut(s) 89, 151, 2657
AlwI GGATC 4 cut(s) 669, 1275, 1288, 2840
AlwNI CAGNNNCTG 2 cut(s) 1999, 3299
Ama87I CYCGRG 1 cut(s) 2051
Aor13HI TCCGGA 2 cut(s) 274, 2808
AoxI GGCC 8 cut(s) 435, 1115, 1317, 1940, 2709, 3204, 3407, 3541
ApeKI GCWGC 9 cut(s) 170, 579, 1949, 1987, 2266, 2446, 2530, 3176, 3304
ArsI GACNNNNNNTTYG 4 cut(s) 649, 681, 3571, 3603
Asp700I GAANNNNTTC 5 cut(s) 55, 1504, 1643, 2297, 2622
AspLEI GCGC 4 cut(s) 22, 178, 469, 2987
AspS9I GGNCC 2 cut(s) 2027, 3076
AsuHPI GGTGA 9 cut(s) 326, 1279, 2405, 2681, 2690, 2876, 3101, 3511, 3770
AvaI CYCGRG 1 cut(s) 2051
AvaII GGWCC 2 cut(s) 2027, 3076
BalI TGGCCA 2 cut(s) 1942, 3543
BamHI GGATCC 1 cut(s) 1280
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 265
BbrPI CACGTG 1 cut(s) 2033
BbsI GAAGAC 5 cut(s) 718, 764, 1734, 2385, 2601
Bbv12I GWGCWC 3 cut(s) 265, 697, 1966
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 9 cut(s) 157, 591, 1961, 1999, 2253, 2433, 2517, 3163, 3291
BceAI ACGGC 1 cut(s) 454
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 5 cut(s) 891, 3211, 3329, 3522, 3545
BciVI GTATCC 3 cut(s) 2131, 2422, 2809
BclI TGATCA 2 cut(s) 1045, 3760
BcoDI GTCTC 3 cut(s) 89, 151, 2657
BcuI ACTAGT 1 cut(s) 767
BfmI CTRYAG 4 cut(s) 1523, 2406, 3006, 3305
BfoI RGCGCY 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 3689
BfuAI ACCTGC 3 cut(s) 2476, 2575, 2937
BfuI GTATCC 3 cut(s) 2131, 2422, 2809
BglII AGATCT 1 cut(s) 3666
BlpI GCTNAGC 2 cut(s) 2216, 3695
Bme1390I CCNGG 5 cut(s) 891, 3211, 3329, 3522, 3545
Bme18I GGWCC 2 cut(s) 2027, 3076
BmeT110I CYCGRG 1 cut(s) 2051
BmgT120I GGNCC 2 cut(s) 2027, 3076
BmiI GGNNCC 3 cut(s) 177, 1282, 3215
BmrFI CCNGG 5 cut(s) 891, 3211, 3329, 3522, 3545
BoxI GACNNNNGTC 1 cut(s) 2053
BpiI GAAGAC 5 cut(s) 718, 764, 1734, 2385, 2601
BplI GAGNNNNNCTC 4 cut(s) 469, 501, 2699, 2731
BpmI CTGGAG 3 cut(s) 873, 1976, 3708
Bpu10I CCTNAGC 1 cut(s) 720
Bpu1102I GCTNAGC 2 cut(s) 2216, 3695
BpuEI CTTGAG 4 cut(s) 413, 1421, 1942, 3695
BsaAI YACGTR 1 cut(s) 2033
BsaBI GATNNNNATC 1 cut(s) 2820
BsaHI GRCGYC 2 cut(s) 160, 176
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 9 cut(s) 117, 195, 1346, 2142, 2748, 3084, 3328, 3410, 3520
BsaWI WCCGGW 2 cut(s) 274, 2808
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 3085, 3416
Bse1I ACTGG 3 cut(s) 1252, 1993, 2671
Bse3DI GCAATG 7 cut(s) 596, 777, 1543, 1752, 2432, 2441, 2808
Bse8I GATNNNNATC 1 cut(s) 2820
BseAI TCCGGA 2 cut(s) 274, 2808
BseBI CCWGG 5 cut(s) 891, 3211, 3329, 3522, 3545
BseDI CCNNGG 9 cut(s) 117, 195, 1346, 2142, 2748, 3084, 3328, 3410, 3520
BseJI GATNNNNATC 1 cut(s) 2820
BseLI CCNNNNNNNGG 3 cut(s) 172, 3085, 3416
BseMI GCAATG 7 cut(s) 596, 777, 1543, 1752, 2432, 2441, 2808
BseNI ACTGG 3 cut(s) 1252, 1993, 2671
BseRI GAGGAG 4 cut(s) 255, 401, 737, 1213
BseXI GCAGC 9 cut(s) 157, 591, 1961, 1999, 2253, 2433, 2517, 3163, 3291
BseYI CCCAGC 1 cut(s) 2858
BsgI GTGCAG 1 cut(s) 2006
Bsh1236I CGCG 2 cut(s) 323, 2985
Bsh1285I CGRYCG 1 cut(s) 2291
BshFI GGCC 8 cut(s) 437, 1117, 1319, 1942, 2711, 3206, 3409, 3543
BshNI GGYRCC 1 cut(s) 175
BsiEI CGRYCG 1 cut(s) 2291
BsiHKAI GWGCWC 3 cut(s) 265, 697, 1966
BsiHKCI CYCGRG 1 cut(s) 2051
BsiSI CCGG 2 cut(s) 275, 2809
BslFI GGGAC 2 cut(s) 3349, 3502
BslI CCNNNNNNNGG 3 cut(s) 172, 3085, 3416
BsmAI GTCTC 3 cut(s) 89, 151, 2657
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 3349, 3502
BsmI GAATGC 2 cut(s) 22, 1101
BsnI GGCC 8 cut(s) 437, 1117, 1319, 1942, 2711, 3206, 3409, 3543
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 2051
Bsp1286I GDGCHC 3 cut(s) 265, 697, 1966
Bsp13I TCCGGA 2 cut(s) 274, 2808
Bsp1720I GCTNAGC 2 cut(s) 2216, 3695
Bsp19I CCATGG 2 cut(s) 117, 2748
BspANI GGCC 8 cut(s) 437, 1117, 1319, 1942, 2711, 3206, 3409, 3543
BspEI TCCGGA 2 cut(s) 274, 2808
BspFNI CGCG 2 cut(s) 323, 2985
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 3 cut(s) 177, 1282, 3215
BspMAI CTGCAG 3 cut(s) 2410, 3010, 3309
BspMI ACCTGC 3 cut(s) 2476, 2575, 2937
BspPI GGATC 4 cut(s) 669, 1275, 1288, 2840
BspT107I GGYRCC 1 cut(s) 175
BspTI CTTAAG 1 cut(s) 3689
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 7 cut(s) 596, 777, 1543, 1752, 2432, 2441, 2808
BsrI ACTGG 3 cut(s) 1252, 1993, 2671
BssECI CCNNGG 9 cut(s) 117, 195, 1346, 2142, 2748, 3084, 3328, 3410, 3520
BssNI GRCGYC 2 cut(s) 160, 176
BssT1I CCWWGG 4 cut(s) 117, 2748, 3084, 3410
Bst2UI CCWGG 5 cut(s) 891, 3211, 3329, 3522, 3545
Bst4CI ACNGT 9 cut(s) 109, 192, 464, 986, 1035, 1573, 2001, 2454, 2684
Bst6I CTCTTC 2 cut(s) 273, 791
BstACI GRCGYC 2 cut(s) 160, 176
BstAFI CTTAAG 1 cut(s) 3689
BstAPI GCANNNNNTGC 2 cut(s) 2100, 2887
BstBAI YACGTR 1 cut(s) 2033
BstC8I GCNNGC 7 cut(s) 816, 1158, 1356, 1616, 2241, 2983, 3575
BstDSI CCRYGG 3 cut(s) 117, 195, 2748
BstENI CCTNNNNNAGG 1 cut(s) 3414
BstFNI CGCG 2 cut(s) 323, 2985
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 4 cut(s) 22, 178, 469, 2987
BstMAI GTCTC 3 cut(s) 89, 151, 2657
BstMCI CGRYCG 1 cut(s) 2291
BstNI CCWGG 5 cut(s) 891, 3211, 3329, 3522, 3545
BstNSI RCATGY 3 cut(s) 1618, 1645, 2243
BstPAI GACNNNNGTC 1 cut(s) 2053
BstSCI CCNGG 5 cut(s) 889, 3209, 3327, 3520, 3543
BstSFI CTRYAG 4 cut(s) 1523, 2406, 3006, 3305
BstUI CGCG 2 cut(s) 323, 2985
BstV1I GCAGC 9 cut(s) 157, 591, 1961, 1999, 2253, 2433, 2517, 3163, 3291
BstV2I GAAGAC 5 cut(s) 718, 764, 1734, 2385, 2601
BstX2I RGATCY 3 cut(s) 1280, 2832, 3666
BstYI RGATCY 3 cut(s) 1280, 2832, 3666
BsuI GTATCC 3 cut(s) 2131, 2422, 2809
BsuRI GGCC 8 cut(s) 437, 1117, 1319, 1942, 2711, 3206, 3409, 3543
BtgI CCRYGG 3 cut(s) 117, 195, 2748
BtsI GCAGTG 3 cut(s) 1884, 2227, 2868
BtsIMutI CAGTG 9 cut(s) 991, 1169, 1259, 1403, 1884, 1899, 2227, 2689, 2868
BveI ACCTGC 3 cut(s) 2476, 2575, 2937
Cac8I GCNNGC 7 cut(s) 816, 1158, 1356, 1616, 2241, 2983, 3575
CaiI CAGNNNCTG 2 cut(s) 1999, 3299
CciI TCATGA 1 cut(s) 898
CfoI GCGC 4 cut(s) 22, 178, 469, 2987
Cfr13I GGNCC 2 cut(s) 2027, 3076
CseI GACGC 4 cut(s) 98, 168, 2408, 2771
Csp6I GTAC 3 cut(s) 570, 1412, 3647
CspCI CAANNNNNGTGG 4 cut(s) 2019, 2054, 2940, 2975
CviQI GTAC 3 cut(s) 570, 1412, 3647
DinI GGCGCC 1 cut(s) 177
DraI TTTAAA 4 cut(s) 1074, 1812, 2494, 3067
DraIII CACNNNGTG 1 cut(s) 2100
DrdI GACNNNNNNGTC 1 cut(s) 2701
DseDI GACNNNNNNGTC 1 cut(s) 2701
EaeI YGGCCR 2 cut(s) 1940, 3541
Eam1104I CTCTTC 2 cut(s) 273, 791
EarI CTCTTC 2 cut(s) 273, 791
EciI GGCGGA 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 4 cut(s) 117, 2748, 3084, 3410
Eco147I AGGCCT 1 cut(s) 3409
Eco24I GRGCYC 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 2027, 3076
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 7 cut(s) 81, 1182, 1579, 1662, 1923, 3287, 3663
Eco72I CACGTG 1 cut(s) 2033
Eco88I CYCGRG 1 cut(s) 2051
EcoICRI GAGCTC 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 3414
EcoRI GAATTC 3 cut(s) 761, 2297, 3045
EcoRII CCWGG 5 cut(s) 889, 3209, 3327, 3520, 3543
EcoT14I CCWWGG 4 cut(s) 117, 2748, 3084, 3410
EcoT38I GRGCYC 1 cut(s) 265
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
ErhI CCWWGG 4 cut(s) 117, 2748, 3084, 3410
Esp3I CGTCTC 1 cut(s) 151
FaqI GGGAC 2 cut(s) 3349, 3502
FauI CCCGC 4 cut(s) 241, 410, 1363, 3653
FbaI TGATCA 2 cut(s) 1045, 3760
FriOI GRGCYC 1 cut(s) 265
GlaI GCGC 4 cut(s) 21, 177, 468, 2986
GsaI CCCAGC 1 cut(s) 2862
GsuI CTGGAG 3 cut(s) 873, 1976, 3708
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 8 cut(s) 437, 1117, 1319, 1942, 2711, 3206, 3409, 3543
HapII CCGG 2 cut(s) 275, 2809
HgaI GACGC 4 cut(s) 98, 168, 2408, 2771
HhaI GCGC 4 cut(s) 22, 178, 469, 2987
Hin1I GRCGYC 2 cut(s) 160, 176
Hin6I GCGC 4 cut(s) 20, 176, 467, 2985
HinP1I GCGC 4 cut(s) 20, 176, 467, 2985
HincII GTYRAC 2 cut(s) 870, 2509
HindII GTYRAC 2 cut(s) 870, 2509
HindIII AAGCTT 4 cut(s) 54, 861, 2897, 3549
HpaII CCGG 2 cut(s) 275, 2809
HphI GGTGA 9 cut(s) 326, 1279, 2405, 2681, 2690, 2876, 3101, 3511, 3770
Hpy166II GTNNAC 8 cut(s) 195, 870, 982, 1884, 2030, 2509, 2968, 3020
Hpy8I GTNNAC 8 cut(s) 195, 870, 982, 1884, 2030, 2509, 2968, 3020
Hpy99I CGWCG 2 cut(s) 358, 475
HpyCH4III ACNGT 9 cut(s) 109, 192, 464, 986, 1035, 1573, 2001, 2454, 2684
HpyCH4IV ACGT 1 cut(s) 2032
HpySE526I ACGT 1 cut(s) 2032
Hsp92I GRCGYC 2 cut(s) 160, 176
HspAI GCGC 4 cut(s) 20, 176, 467, 2985
KasI GGCGCC 1 cut(s) 175
Kpn2I TCCGGA 2 cut(s) 274, 2808
Ksp22I TGATCA 2 cut(s) 1045, 3760
Lsp1109I GCAGC 9 cut(s) 157, 591, 1961, 1999, 2253, 2433, 2517, 3163, 3291
MaeII ACGT 1 cut(s) 2032
MaeIII GTNAC 5 cut(s) 628, 1906, 1995, 2678, 2864
MfeI CAATTG 1 cut(s) 3602
MflI RGATCY 3 cut(s) 1280, 2832, 3666
MhlI GDGCHC 3 cut(s) 265, 697, 1966
MlsI TGGCCA 2 cut(s) 1942, 3543
MluNI TGGCCA 2 cut(s) 1942, 3543
Mly113I GGCGCC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 411, 1442
Mox20I TGGCCA 2 cut(s) 1942, 3543
MroI TCCGGA 2 cut(s) 274, 2808
MroXI GAANNNNTTC 5 cut(s) 55, 1504, 1643, 2297, 2622
MscI TGGCCA 2 cut(s) 1942, 3543
MslI CAYNNNNRTG 5 cut(s) 587, 1536, 1646, 1904, 2580
Msp20I TGGCCA 2 cut(s) 1942, 3543
MspA1I CMGCKG 1 cut(s) 2266
MspCI CTTAAG 1 cut(s) 3689
MspI CCGG 2 cut(s) 275, 2809
MspR9I CCNGG 5 cut(s) 891, 3211, 3329, 3522, 3545
MunI CAATTG 1 cut(s) 3602
Mva1269I GAATGC 2 cut(s) 22, 1101
MvaI CCWGG 5 cut(s) 891, 3211, 3329, 3522, 3545
MvnI CGCG 2 cut(s) 323, 2985
NarI GGCGCC 1 cut(s) 176
NcoI CCATGG 2 cut(s) 117, 2748
NlaIV GGNNCC 3 cut(s) 177, 1282, 3215
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 4 cut(s) 628, 1906, 2678, 2864
NspI RCATGY 3 cut(s) 1618, 1645, 2243
OliI CACNNNNGTG 1 cut(s) 1904
PaeI GCATGC 2 cut(s) 1618, 2243
PaeR7I CTCGAG 1 cut(s) 2051
PagI TCATGA 1 cut(s) 898
PceI AGGCCT 1 cut(s) 3409
PciI ACATGT 1 cut(s) 1641
PctI GAATGC 2 cut(s) 22, 1101
PdmI GAANNNNTTC 5 cut(s) 55, 1504, 1643, 2297, 2622
PfoI TCCNGGA 2 cut(s) 889, 3209
PluTI GGCGCC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 2033
PmlI CACGTG 1 cut(s) 2033
Ppu21I YACGTR 1 cut(s) 2033
PscI ACATGT 1 cut(s) 1641
PshAI GACNNNNGTC 1 cut(s) 2053
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 5 cut(s) 889, 3209, 3327, 3520, 3543
PspCI CACGTG 1 cut(s) 2033
PspFI CCCAGC 1 cut(s) 2858
PspGI CCWGG 5 cut(s) 889, 3209, 3327, 3520, 3543
PspN4I GGNNCC 3 cut(s) 177, 1282, 3215
PspPI GGNCC 2 cut(s) 2027, 3076
PspXI VCTCGAGB 1 cut(s) 2051
PsrI GAACNNNNNNTAC 2 cut(s) 2403, 2435
PstI CTGCAG 3 cut(s) 2410, 3010, 3309
PstNI CAGNNNCTG 2 cut(s) 1999, 3299
PsuI RGATCY 3 cut(s) 1280, 2832, 3666
PvuII CAGCTG 1 cut(s) 2266
RsaI GTAC 3 cut(s) 571, 1413, 3648
RsaNI GTAC 3 cut(s) 570, 1412, 3647
RseI CAYNNNNRTG 5 cut(s) 587, 1536, 1646, 1904, 2580
SacI GAGCTC 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 2027, 3076
ScrFI CCNGG 5 cut(s) 891, 3211, 3329, 3522, 3545
SduI GDGCHC 3 cut(s) 265, 697, 1966
SfcI CTRYAG 4 cut(s) 1523, 2406, 3006, 3305
SfoI GGCGCC 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 2051
SinI GGWCC 2 cut(s) 2027, 3076
SlaI CTCGAG 1 cut(s) 2051
SmiMI CAYNNNNRTG 5 cut(s) 587, 1536, 1646, 1904, 2580
SmlI CTYRAG 6 cut(s) 392, 1436, 1957, 2051, 3689, 3710
SmoI CTYRAG 6 cut(s) 392, 1436, 1957, 2051, 3689, 3710
SpeI ACTAGT 1 cut(s) 767
SphI GCATGC 2 cut(s) 1618, 2243
SseBI AGGCCT 1 cut(s) 3409
SspDI GGCGCC 1 cut(s) 175
SspI AATATT 5 cut(s) 1132, 3063, 3347, 3396, 3510
SstI GAGCTC 1 cut(s) 265
StuI AGGCCT 1 cut(s) 3409
StyD4I CCNGG 5 cut(s) 889, 3209, 3327, 3520, 3543
StyI CCWWGG 4 cut(s) 117, 2748, 3084, 3410
TaaI ACNGT 9 cut(s) 109, 192, 464, 986, 1035, 1573, 2001, 2454, 2684
TaiI ACGT 1 cut(s) 2035
TaqI TCGA 9 cut(s) 14, 518, 839, 2047, 2052, 2128, 2287, 2902, 3492
TaqII GACCGA 1 cut(s) 2305
TatI WGTACW 1 cut(s) 1411
TauI GCSGC 7 cut(s) 176, 239, 242, 245, 258, 323, 338
TscAI CASTG 9 cut(s) 991, 1176, 1259, 1403, 1891, 1906, 2227, 2689, 2875
TseFI GTSAC 4 cut(s) 628, 1906, 2678, 2864
TseI GCWGC 9 cut(s) 170, 579, 1949, 1987, 2266, 2446, 2530, 3176, 3304
Tsp45I GTSAC 4 cut(s) 628, 1906, 2678, 2864
TspGWI ACGGA 5 cut(s) 212, 371, 2531, 2845, 3664
TspRI CASTG 9 cut(s) 991, 1176, 1259, 1403, 1891, 1906, 2227, 2689, 2875
Vha464I CTTAAG 1 cut(s) 3689
VpaK11BI GGWCC 2 cut(s) 2027, 3076
XagI CCTNNNNNAGG 1 cut(s) 3414
XbaI TCTAGA 2 cut(s) 880, 3112
XceI RCATGY 3 cut(s) 1618, 1645, 2243
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 2051
XmnI GAANNNNTTC 5 cut(s) 55, 1504, 1643, 2297, 2622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.