RchiOBHm_Chr6g0272661

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011601
Physical Location & Seq
Reverse (-)
33048057 .. 33048729
673 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24462

Sequence Viewer

Length: 600 bp
ATGGATGACTCTATCAACCATGGCCTAATTGATGGTAGTGAACATGGTGATGGTGATCATTACTTGTGCTTTAAAGATGATGACACTGATGAATCGCATTGTATGTATGTCATATTGAGTGGCACTGCACGTCTCAATGTTCTCTTACCTAAAGCCACCATTCTTTCTTTCACCATATTTGCTCCTCCTCCTGCATTATTTTCACATTCACTGATAGCTTTATACTATGGAGTAGCCACATTTCGGGGGATTTGGACTTTCAATGGTGGCCGGAAGAGGCCTTGCGTTCCATCTGATTATAGGCTGAGATGGGCTGATCTCTTCCGTGCATCACTTTCTCTGGTTGCATTTCTAACATTTGCAGGTTCACATAATGATGTAGTGGGTTGTTATTATCCAGCAATGCCTAAGAGGATCACCAACAACCTTCCTCTGGTGGTTGGGTTTGTAGTATCTTTCTTGTTTGTGTTGTTTCCTTCCAAGAGAAGGGGAATTGATTATCCTTTCTTGCTGATGAGAGGTGCTTTGTACTCTAGACGTTCAAAGAGGCATGTTCTTTTATTACAGATAAGTTATGGCATCTGTAAGTCTTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

199

Amino Acids

22.44

Weight (kDa)

9.14

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 73 - 167 8.6e-28 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 268
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 3 cut(s) 243, 433, 486
AgsI TTSAA 2 cut(s) 262, 543
AjiI CACGTC 1 cut(s) 131
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 422
AoxI GGCC 3 cut(s) 22, 268, 278
AsuHPI GGTGA 4 cut(s) 59, 65, 163, 409
BccI CCATC 4 cut(s) 26, 44, 298, 303
BclI TGATCA 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 534
BfuAI ACCTGC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 131
BmsI GCATC 2 cut(s) 338, 588
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 433, 486
Bse3DI GCAATG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 3 cut(s) 243, 433, 486
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 2 cut(s) 174, 177
BsgI GTGCAG 1 cut(s) 111
BshFI GGCC 3 cut(s) 24, 270, 280
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 3 cut(s) 243, 433, 486
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 3 cut(s) 24, 270, 280
Bsp143I GATC 3 cut(s) 55, 316, 414
Bsp19I CCATGG 1 cut(s) 19
BspANI GGCC 3 cut(s) 24, 270, 280
BspCNI CTCAG 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 3 cut(s) 55, 316, 414
BssT1I CCWWGG 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 269, 326
BstDEI CTNAG 2 cut(s) 305, 408
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 58, 319, 417
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 3 cut(s) 55, 316, 414
BstNSI RCATGY 1 cut(s) 554
BsuRI GGCC 3 cut(s) 24, 270, 280
BtgI CCRYGG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 3 cut(s) 84, 123, 209
BveI ACCTGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 529
CviAII CATG 3 cut(s) 20, 44, 551
CviJI RGCY 8 cut(s) 24, 155, 218, 236, 270, 280, 304, 314
CviKI_1 RGCY 8 cut(s) 24, 155, 218, 236, 270, 280, 304, 314
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 305, 408
DpnI GATC 3 cut(s) 57, 318, 416
DpnII GATC 3 cut(s) 55, 316, 414
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 269, 326
EarI CTCTTC 2 cut(s) 269, 326
Eco130I CCWWGG 1 cut(s) 19
Eco147I AGGCCT 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 3 cut(s) 23, 47, 554
FatI CATG 3 cut(s) 19, 43, 550
FbaI TGATCA 1 cut(s) 55
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 534
HaeIII GGCC 3 cut(s) 24, 270, 280
HapII CCGG 1 cut(s) 271
Hin1II CATG 3 cut(s) 23, 47, 554
HinfI GANTC 2 cut(s) 8, 92
HpaII CCGG 1 cut(s) 271
HphI GGTGA 4 cut(s) 59, 65, 163, 409
Hpy166II GTNNAC 2 cut(s) 41, 368
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 534
Hpy8I GTNNAC 2 cut(s) 41, 368
HpyAV CCTTC 3 cut(s) 437, 480, 486
HpyCH4IV ACGT 2 cut(s) 130, 538
HpyCH4V TGCA 5 cut(s) 128, 194, 329, 347, 362
HpyF3I CTNAG 2 cut(s) 305, 408
HpySE526I ACGT 2 cut(s) 130, 538
Hsp92II CATG 3 cut(s) 23, 47, 554
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 316, 414
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 204, 284, 326, 348, 411, 419
LweI GCATC 2 cut(s) 338, 588
MaeI CTAG 1 cut(s) 534
MaeII ACGT 2 cut(s) 130, 538
MalI GATC 3 cut(s) 57, 318, 416
MboI GATC 3 cut(s) 55, 316, 414
MboII GAAGA 2 cut(s) 286, 313
MluCI AATT 2 cut(s) 27, 492
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 7 cut(s) 195, 198, 270, 405, 441, 512, 540
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 2 cut(s) 48, 375
MspI CCGG 1 cut(s) 271
NcoI CCATGG 1 cut(s) 19
NdeII GATC 3 cut(s) 55, 316, 414
NlaIII CATG 3 cut(s) 23, 47, 554
NspI RCATGY 1 cut(s) 554
PceI AGGCCT 1 cut(s) 280
PfeI GAWTC 1 cut(s) 92
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 2 cut(s) 48, 375
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 3 cut(s) 55, 316, 414
SchI GAGTC 1 cut(s) 2
SetI ASST 7 cut(s) 133, 151, 220, 367, 429, 523, 541
SfaNI GCATC 2 cut(s) 338, 588
SmiMI CAYNNNNRTG 2 cut(s) 48, 375
Sse9I AATT 2 cut(s) 27, 492
SseBI AGGCCT 1 cut(s) 280
SspMI CTAG 1 cut(s) 534
StuI AGGCCT 1 cut(s) 280
StyI CCWWGG 1 cut(s) 19
TaiI ACGT 2 cut(s) 133, 541
TasI AATT 2 cut(s) 27, 492
TatI WGTACW 1 cut(s) 528
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 3 cut(s) 91, 130, 216
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 91, 130, 216
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 1 cut(s) 554
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.