Rroxscaffold_1G00015990

protein phosphatase 2C 39

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011601
Physical Location & Seq
Reverse (-)
19925781 .. 19930148
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015990.1

Sequence Viewer

Length: 192 bp
ATGATGAAACAGTTTGCTGTCTTAGCAAGTGATGGACTGTGGAAGGTGATGACAAGCCAAGAAGTTGTGGATGCCATAAATAATATAGAGGATGCTCGGGCAGCAGCAAAGCACCTTATTGAAGAGGCAGTCAATAGGAAGAGCTCGGACGATATTTCCTTGTGTAGTTGTAAGATTTTGGTGAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

63

Amino Acids

6.92

Weight (kDa)

5.12

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 4 - 52 6.3e-11 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 1 cut(s) 144
AluI AGCT 1 cut(s) 144
Alw21I GWGCWC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 101, 104
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 96
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 113, 116
BccI CCATC 1 cut(s) 26
BisI GCNGC 2 cut(s) 102, 105
BlsI GCNGC 2 cut(s) 103, 106
BmeT110I CYCGRG 1 cut(s) 96
BmsI GCATC 2 cut(s) 61, 82
BseGI GGATG 2 cut(s) 76, 97
BseXI GCAGC 2 cut(s) 113, 116
BsiHKAI GWGCWC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 134
Bst4CI ACNGT 2 cut(s) 12, 39
Bst6I CTCTTC 2 cut(s) 117, 134
BstDEI CTNAG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 76, 97
BstMWI GCNNNNNNNGC 2 cut(s) 23, 101
BstV1I GCAGC 2 cut(s) 113, 116
BtsCI GGATG 2 cut(s) 76, 97
CviJI RGCY 2 cut(s) 57, 144
CviKI_1 RGCY 2 cut(s) 57, 144
DdeI CTNAG 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 117, 134
EarI CTCTTC 2 cut(s) 117, 134
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 146
FaiI YATR 3 cut(s) 77, 86, 190
Fnu4HI GCNGC 2 cut(s) 102, 105
FokI GGATG 2 cut(s) 83, 104
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 102, 105
GluI GCNGC 2 cut(s) 102, 105
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 12, 39
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 101
HpyF3I CTNAG 1 cut(s) 22
LguI GCTCTTC 1 cut(s) 134
Lsp1109I GCAGC 2 cut(s) 113, 116
LweI GCATC 2 cut(s) 61, 82
MboII GAAGA 2 cut(s) 134, 151
MhlI GDGCHC 1 cut(s) 146
MnlI CCTC 2 cut(s) 82, 118
MwoI GCNNNNNNNGC 2 cut(s) 23, 101
PciSI GCTCTTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 103, 106
Psp124BI GAGCTC 1 cut(s) 146
SacI GAGCTC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 134
SatI GCNGC 2 cut(s) 102, 105
SduI GDGCHC 1 cut(s) 146
SetI ASST 3 cut(s) 48, 117, 146
SfaNI GCATC 2 cut(s) 61, 82
SgeI CNNG 7 cut(s) 39, 66, 71, 108, 110, 157, 172
SstI GAGCTC 1 cut(s) 146
TaaI ACNGT 2 cut(s) 12, 39
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.