RchiOBHm_Chr6g0273491

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011601
Physical Location & Seq
Reverse (-)
34367801 .. 34368726
926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24535

Sequence Viewer

Length: 648 bp
ATGGACGACGTCTCTATCAACCATGACCTGATTGATAGCAGTGACCACGGTAATGGTGATGATTACTTGTGCTTTAAAGAAGATGACACTGATGAATCCCATTGTATGTATGTCATGAATGTAATATTGAGTGGCACTGCACGCCTCAATGTTCTTTTACCTACAGCCACCATTCTTTGTTTCGCCATATTTGCTCCTCTCCTTACCAATGATGGCATATGCACCGACTTCAGCCGCTGGCTGATGGGTTTCTTCATTGCCCTTTCAGCAGCCTCCTGCATCATTTTCACCTTCACTGATAGCTTTAAAACAGCGACAGGCAGGTTATACTATGGAGTGGCCACATTTCGGGGAATCTGGACTTTCAATGGTGGCCGGAAGAGGCCTTGCGTTCCATCTGATTATAGGCTGAGGTGGGCTGACCTCTTCCATGCATCAGTTTCTCTGGTTGCATTTCTAACATTTGCAGGTTCACATAATGATGTAGTGGGTTGTTATTATCCAGCAATGCCTAAGAGGATCACCAACAACCTTCCTCTGGTGGTTGGGTTTGTAGTATCTATCTTCTTTGTGCTGTTTCCTTCCAAGAGAAGGGGAATTGGTTATCCTTTCTTGCTGACGAGAGATGCTTTGTACACTAGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

215

Amino Acids

24.09

Weight (kDa)

6.49

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 45 - 202 3.8e-57 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc36I ACCTGC 2 cut(s) 312, 458
AciI CCGC 1 cut(s) 235
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 2 cut(s) 339, 373
AcuI CTGAAG 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 3 cut(s) 348, 538, 591
AgsI TTSAA 1 cut(s) 367
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 237
AoxI GGCC 3 cut(s) 339, 373, 383
ApeKI GCWGC 1 cut(s) 269
AsuHPI GGTGA 3 cut(s) 68, 280, 514
BalI TGGCCA 1 cut(s) 341
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 281
BccI CCATC 3 cut(s) 206, 238, 403
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 2 cut(s) 312, 458
BisI GCNGC 2 cut(s) 235, 270
BlsI GCNGC 2 cut(s) 236, 271
BmsI GCATC 3 cut(s) 288, 443, 616
Bpu10I CCTNAGC 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 3 cut(s) 348, 538, 591
Bse3DI GCAATG 2 cut(s) 255, 513
BseDI CCNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 3 cut(s) 348, 538, 591
BseMI GCAATG 2 cut(s) 255, 513
BseMII CTCAG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 3 cut(s) 341, 375, 385
BsiSI CCGG 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 348, 538, 591
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 3 cut(s) 341, 375, 385
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 1 cut(s) 519
BspACI CCGC 1 cut(s) 235
BspANI GGCC 3 cut(s) 341, 375, 385
BspCNI CTCAG 1 cut(s) 402
BspHI TCATGA 1 cut(s) 114
BspMI ACCTGC 2 cut(s) 312, 458
BspPI GGATC 1 cut(s) 527
BsrDI GCAATG 2 cut(s) 255, 513
BsrGI TGTACA 1 cut(s) 633
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 519
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 374, 431
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 142, 239
BstDEI CTNAG 2 cut(s) 410, 513
BstDSI CCRYGG 1 cut(s) 46
BstKTI GATC 1 cut(s) 522
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 519
BstMWI GCNNNNNNNGC 3 cut(s) 141, 191, 266
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 281
BstXI CCANNNNNNTGG 1 cut(s) 53
BsuRI GGCC 3 cut(s) 341, 375, 385
BtgI CCRYGG 1 cut(s) 46
BtsI GCAGTG 2 cut(s) 46, 135
BtsIMutI CAGTG 4 cut(s) 46, 87, 135, 294
BveI ACCTGC 2 cut(s) 312, 458
Cac8I GCNNGC 2 cut(s) 142, 239
CaiI CAGNNNCTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 114
Csp6I GTAC 1 cut(s) 634
CviAII CATG 3 cut(s) 23, 115, 431
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 2 cut(s) 410, 513
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
DraI TTTAAA 2 cut(s) 76, 307
EaeI YGGCCR 2 cut(s) 339, 373
Eam1104I CTCTTC 2 cut(s) 374, 431
EarI CTCTTC 2 cut(s) 374, 431
Eco147I AGGCCT 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 3 cut(s) 26, 118, 434
FatI CATG 3 cut(s) 22, 114, 430
FauNDI CATATG 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 235, 270
Fsp4HI GCNGC 2 cut(s) 235, 270
FspBI CTAG 1 cut(s) 639
GluI GCNGC 2 cut(s) 235, 270
HaeIII GGCC 3 cut(s) 341, 375, 385
HapII CCGG 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 26, 118, 434
HinfI GANTC 2 cut(s) 95, 354
HpaII CCGG 1 cut(s) 376
HphI GGTGA 3 cut(s) 68, 280, 514
Hpy166II GTNNAC 2 cut(s) 473, 636
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 115, 358
Hpy8I GTNNAC 2 cut(s) 473, 636
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 4 cut(s) 301, 542, 585, 591
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 6 cut(s) 140, 222, 279, 434, 452, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 191, 266
HpyF3I CTNAG 2 cut(s) 410, 513
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 26, 118, 434
Kzo9I GATC 1 cut(s) 519
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 3 cut(s) 288, 443, 616
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 521
MboI GATC 1 cut(s) 519
MboII GAAGA 5 cut(s) 92, 244, 391, 418, 556
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 1 cut(s) 597
MluNI TGGCCA 1 cut(s) 341
MnlI CCTC 8 cut(s) 155, 207, 283, 375, 405, 434, 510, 546
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 436
MscI TGGCCA 1 cut(s) 341
MseI TTAA 3 cut(s) 75, 306, 646
MslI CAYNNNNRTG 2 cut(s) 51, 480
Msp20I TGGCCA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 1 cut(s) 376
MwoI GCNNNNNNNGC 3 cut(s) 141, 191, 266
NdeI CATATG 1 cut(s) 218
NdeII GATC 1 cut(s) 519
NlaIII CATG 3 cut(s) 26, 118, 434
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 436
PagI TCATGA 1 cut(s) 114
PceI AGGCCT 1 cut(s) 385
PfeI GAWTC 2 cut(s) 95, 354
PflFI GACNNNGTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 236, 271
PstNI CAGNNNCTG 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 8
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 2 cut(s) 51, 480
SaqAI TTAA 3 cut(s) 75, 306, 646
SatI GCNGC 2 cut(s) 235, 270
Sau3AI GATC 1 cut(s) 519
SfaNI GCATC 3 cut(s) 288, 443, 616
SfcI CTRYAG 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 51, 480
Sse9I AATT 1 cut(s) 597
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 1 cut(s) 235
SspI AATATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 639
StuI AGGCCT 1 cut(s) 385
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 12
TasI AATT 1 cut(s) 597
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 2 cut(s) 95, 354
Tru1I TTAA 3 cut(s) 75, 306, 646
Tru9I TTAA 3 cut(s) 75, 306, 646
TscAI CASTG 4 cut(s) 46, 94, 142, 301
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 108, 131, 244
TspRI CASTG 4 cut(s) 46, 94, 142, 301
Tth111I GACNNNGTC 1 cut(s) 8
XspI CTAG 1 cut(s) 639
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.