Rw6G016670

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011601
Physical Location & Seq
Reverse (-)
32841945 .. 32842716
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016670.1

Sequence Viewer

Length: 534 bp
ATGAATTTAATATTGAGTGGCACTGCACGCCTCAATGTTCTCTTACCTTCAGCCACCATTCTTTGTTTCACCATATTTGCTCCTCTCCTTACCAATGATGGCATATGCACCGACTTCAGCCGCTGGCTGATGGGTTTCTTCATTGCCCTTTCAGCAGCCTCCTGCATCATTTTCACCTTCACTGATAGCTTTAAAACAGCGACCGGCAGGTTATACTATGGAGTGGCCACATTTCGGGGAATCTGGACTTTCAATGGTGGCCGGAAGAGGCCTTGCGTTCCATCTGATTATAGGCTGAGGTGGGCTGACCTCTTCCATGCATCACTTTCTCTGGTTGCATTTCTAACATTTGCAGGTTCACATAATGATGTAGTGGGTTGTTATTATCCAGCAATGCCTAAGAGGATCACCAACAACCTTCCTCTGGTGGTTGGGTTTGTAGTATCTATCTTCTTTGTGCTGTTTCCTTCCAAGAGAAGGGGAATTGGTTATCCTTTCTTGCTGACGAGAGATGCTTTGTACACTAGATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

177

Amino Acids

19.8

Weight (kDa)

9.73

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 7 - 164 5.1e-57 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 198, 344
AciI CCGC 1 cut(s) 121
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 2 cut(s) 225, 259
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 2 cut(s) 33, 100
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 3 cut(s) 234, 424, 477
AgsI TTSAA 1 cut(s) 253
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
AlwI GGATC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 123
AoxI GGCC 3 cut(s) 225, 259, 269
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 61, 166, 400
BalI TGGCCA 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 167
BccI CCATC 3 cut(s) 92, 124, 289
BfaI CTAG 1 cut(s) 525
BfuAI ACCTGC 2 cut(s) 198, 344
BisI GCNGC 2 cut(s) 121, 156
BlsI GCNGC 2 cut(s) 122, 157
BmsI GCATC 3 cut(s) 174, 329, 502
Bpu10I CCTNAGC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 424, 477
Bse118I RCCGGY 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 141, 399
BseLI CCNNNNNNNGG 3 cut(s) 234, 424, 477
BseMI GCAATG 2 cut(s) 141, 399
BseMII CTCAG 1 cut(s) 287
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 3 cut(s) 227, 261, 271
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 2 cut(s) 204, 262
BslI CCNNNNNNNGG 3 cut(s) 234, 424, 477
BsnI GGCC 3 cut(s) 227, 261, 271
Bsp1407I TGTACA 1 cut(s) 519
Bsp143I GATC 1 cut(s) 405
BspACI CCGC 1 cut(s) 121
BspANI GGCC 3 cut(s) 227, 261, 271
BspCNI CTCAG 1 cut(s) 288
BspMI ACCTGC 2 cut(s) 198, 344
BspPI GGATC 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 141, 399
BsrFI RCCGGY 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 519
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 1 cut(s) 405
Bst6I CTCTTC 2 cut(s) 260, 317
BstAUI TGTACA 1 cut(s) 519
BstC8I GCNNGC 2 cut(s) 28, 125
BstDEI CTNAG 2 cut(s) 296, 399
BstKTI GATC 1 cut(s) 408
BstMBI GATC 1 cut(s) 405
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 27, 152
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 3 cut(s) 227, 261, 271
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 180
BveI ACCTGC 2 cut(s) 198, 344
Cac8I GCNNGC 2 cut(s) 28, 125
CaiI CAGNNNCTG 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 203
Csp6I GTAC 1 cut(s) 520
CviAII CATG 1 cut(s) 317
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 2 cut(s) 296, 399
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
DraI TTTAAA 1 cut(s) 193
EaeI YGGCCR 2 cut(s) 225, 259
Eam1104I CTCTTC 2 cut(s) 260, 317
EarI CTCTTC 2 cut(s) 260, 317
Eco147I AGGCCT 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 33, 100
EcoT22I ATGCAT 1 cut(s) 322
FaeI CATG 1 cut(s) 320
FaiI YATR 8 cut(s) 74, 104, 106, 214, 219, 291, 318, 363
FatI CATG 1 cut(s) 316
FauNDI CATATG 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 121, 156
Fsp4HI GCNGC 2 cut(s) 121, 156
FspBI CTAG 1 cut(s) 525
GluI GCNGC 2 cut(s) 121, 156
HaeIII GGCC 3 cut(s) 227, 261, 271
HapII CCGG 2 cut(s) 204, 262
Hin1II CATG 1 cut(s) 320
HinfI GANTC 1 cut(s) 240
HpaII CCGG 2 cut(s) 204, 262
HphI GGTGA 3 cut(s) 61, 166, 400
Hpy166II GTNNAC 2 cut(s) 359, 522
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 359, 522
HpyAV CCTTC 5 cut(s) 57, 187, 428, 471, 477
HpyCH4V TGCA 6 cut(s) 26, 108, 165, 320, 338, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 152
HpyF3I CTNAG 2 cut(s) 296, 399
Hsp92II CATG 1 cut(s) 320
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 3 cut(s) 174, 329, 502
MaeI CTAG 1 cut(s) 525
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 4 cut(s) 130, 277, 304, 442
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 4, 483
MluNI TGGCCA 1 cut(s) 227
MnlI CCTC 8 cut(s) 41, 93, 169, 261, 291, 320, 396, 432
Mox20I TGGCCA 1 cut(s) 227
Mph1103I ATGCAT 1 cut(s) 322
MscI TGGCCA 1 cut(s) 227
MseI TTAA 3 cut(s) 8, 192, 532
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 2 cut(s) 204, 262
MwoI GCNNNNNNNGC 2 cut(s) 27, 152
NdeI CATATG 1 cut(s) 104
NdeII GATC 1 cut(s) 405
NlaIII CATG 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 322
PceI AGGCCT 1 cut(s) 271
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 2 cut(s) 122, 157
PstNI CAGNNNCTG 1 cut(s) 123
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 3 cut(s) 8, 192, 532
SatI GCNGC 2 cut(s) 121, 156
Sau3AI GATC 1 cut(s) 405
SetI ASST 8 cut(s) 49, 179, 191, 212, 302, 312, 358, 420
SfaNI GCATC 3 cut(s) 174, 329, 502
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 2 cut(s) 4, 483
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 1 cut(s) 121
SspI AATATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 525
StuI AGGCCT 1 cut(s) 271
TasI AATT 2 cut(s) 4, 483
TatI WGTACW 1 cut(s) 519
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 3 cut(s) 8, 192, 532
Tru9I TTAA 3 cut(s) 8, 192, 532
TscAI CASTG 2 cut(s) 28, 187
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 17, 130
TspRI CASTG 2 cut(s) 28, 187
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.