Rh6DG179600

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0011601
Physical Location & Seq
Reverse (-)
31611348 .. 31612572
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG179600.1

Sequence Viewer

Length: 408 bp
ATGGACGACTCTATCAACCATGACCTGATTGATAACAGTGAACACAGTGATGGTGATGATTACTTGTGCTTTGAAGATGATGACACTGATGAATCCCATTGTACGTATGTCCTGAATGTAATATTAAGTGGCACTGCATGTCTCAATGTTCTCTTACCTACAGCCACAATTCTTTCTTTCACCATAATTGCTCCTCTCCTTACCAATGATGGCATATGCACTGACTTCAGCCACTGGCTGATGGGTTTCTTCATGCCCTTTCTGCAGCGTCCTGCATCATTTTCACATTCACTGATAGCTTTAAAACAGCGACGGGCATGTTATACTATGGAGTGGCCATATTTCAGGGAATTTAGACTTTCAATGGTGGTTGGAAGAGGCCCTGCGTTCCATCTGATTATAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

4.57

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 44 - 89 1.8e-09 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 211
AfaI GTAC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 74, 363
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 234
AoxI GGCC 2 cut(s) 335, 379
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 2 cut(s) 65, 172
BalI TGGCCA 1 cut(s) 337
BbvI GCAGC 1 cut(s) 277
BccI CCATC 4 cut(s) 44, 203, 235, 399
BcoDI GTCTC 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 159, 263
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 380
BmsI GCATC 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 2 cut(s) 337, 381
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 2 cut(s) 337, 381
BspANI GGCC 2 cut(s) 337, 381
BspMAI CTGCAG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 38, 47
Bst6I CTCTTC 1 cut(s) 370
BstBAI YACGTR 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNSI RCATGY 2 cut(s) 141, 321
BstSFI CTRYAG 2 cut(s) 159, 263
BstSNI TACGTA 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 337, 381
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 7 cut(s) 43, 52, 84, 132, 219, 232, 290
CaiI CAGNNNCTG 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 380
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 102
CviAII CATG 4 cut(s) 20, 138, 253, 318
CviJI RGCY 7 cut(s) 164, 231, 238, 299, 337, 381, 405
CviKI_1 RGCY 7 cut(s) 164, 231, 238, 299, 337, 381, 405
CviQI GTAC 1 cut(s) 102
DraI TTTAAA 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco105I TACGTA 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 380
FaeI CATG 4 cut(s) 23, 141, 256, 321
FatI CATG 4 cut(s) 19, 137, 252, 317
FauNDI CATATG 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 2 cut(s) 337, 381
HgaI GACGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 23, 141, 256, 321
HinfI GANTC 2 cut(s) 8, 92
HphI GGTGA 2 cut(s) 65, 172
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 315
HpyCH4III ACNGT 2 cut(s) 38, 47
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 4 cut(s) 137, 219, 265, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 4 cut(s) 23, 141, 256, 321
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 6 cut(s) 38, 125, 220, 285, 331, 396
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 284
MaeII ACGT 1 cut(s) 104
MboII GAAGA 3 cut(s) 86, 241, 387
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 3 cut(s) 168, 186, 350
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 2 cut(s) 204, 371
Mox20I TGGCCA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 337
MseI TTAA 2 cut(s) 125, 302
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeI CATATG 1 cut(s) 215
NlaIII CATG 4 cut(s) 23, 141, 256, 321
NspI RCATGY 2 cut(s) 141, 321
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Ppu21I YACGTR 1 cut(s) 105
PspPI GGNCC 1 cut(s) 380
PstI CTGCAG 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 234
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 125, 302
SatI GCNGC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 1 cut(s) 2
SetI ASST 4 cut(s) 27, 107, 160, 301
SfaNI GCATC 1 cut(s) 284
SfcI CTRYAG 2 cut(s) 159, 263
SmiMI CAYNNNNRTG 1 cut(s) 48
SnaBI TACGTA 1 cut(s) 105
Sse9I AATT 3 cut(s) 168, 186, 350
SspI AATATT 1 cut(s) 123
TaaI ACNGT 2 cut(s) 38, 47
TaiI ACGT 1 cut(s) 107
TasI AATT 3 cut(s) 168, 186, 350
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 125, 302
Tru9I TTAA 2 cut(s) 125, 302
TscAI CASTG 7 cut(s) 43, 52, 91, 139, 226, 239, 297
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 105, 241
TspRI CASTG 7 cut(s) 43, 52, 91, 139, 226, 239, 297
XapI RAATTY 1 cut(s) 350
XceI RCATGY 2 cut(s) 141, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.