RchiOBHm_Chr6g0272721

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011601
Physical Location & Seq
Reverse (-)
33114598 .. 33114933
336 bp
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UTR
Exon/CDS
Intron
PRQ24468

Sequence Viewer

Length: 336 bp
ATGTTCTCTTACCTACAGCCACCATTCTTTCTTTCACCATATTTGCTCCTCTCCTTACCAATGATGGCATATCACATATGCACCGACTTCAGCCGCTGGCTGAAGGGTTTCTTCATTGCCCTTTCTGCAGCGTCCTGCATCATTTTCACATTCACTGATAGTTTTAAAACAGCGACGGGCAGGTTACACCATGGAGTGGCCATATTTTGGGGAATTTGGACTTTCAACGGTGGCCGGAAGAGGCCTTGCTTTCCATCTGATTATAGGCTGAGATGGGCTGATCTCTTCCTTGCATCACTCTCTGGTTGCATTTCTAACATTTGCAGGTTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

111

Amino Acids

12.78

Weight (kDa)

9.4

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 23 - 101 2.6e-18 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 171, 315
AccB7I CCANNNNNTGG 2 cut(s) 196, 207
AciI CCGC 1 cut(s) 94
AcoI YGGCCR 2 cut(s) 198, 232
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 2 cut(s) 73, 122
AfiI CCNNNNNNNGG 2 cut(s) 196, 207
AgsI TTSAA 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 96
AoxI GGCC 3 cut(s) 198, 232, 242
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 213
Asp700I GAANNNNTTC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 27
BalI TGGCCA 1 cut(s) 200
BbvI GCAGC 1 cut(s) 140
BccI CCATC 3 cut(s) 58, 262, 267
BfmI CTRYAG 2 cut(s) 14, 126
BfuAI ACCTGC 2 cut(s) 171, 315
BisI GCNGC 2 cut(s) 94, 129
BlsI GCNGC 2 cut(s) 95, 130
BmsI GCATC 2 cut(s) 147, 302
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 207
Bse3DI GCAATG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 196, 207
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 3 cut(s) 200, 234, 244
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 196, 207
BsnI GGCC 3 cut(s) 200, 234, 244
Bsp143I GATC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 1 cut(s) 94
BspANI GGCC 3 cut(s) 200, 234, 244
BspCNI CTCAG 1 cut(s) 261
BspMAI CTGCAG 1 cut(s) 130
BspMI ACCTGC 2 cut(s) 171, 315
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 2 cut(s) 233, 290
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 269
BstDSI CCRYGG 1 cut(s) 190
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSFI CTRYAG 2 cut(s) 14, 126
BstV1I GCAGC 1 cut(s) 140
BsuRI GGCC 3 cut(s) 200, 234, 244
BtgI CCRYGG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 2 cut(s) 171, 315
Cac8I GCNNGC 1 cut(s) 98
CaiI CAGNNNCTG 1 cut(s) 96
CseI GACGC 1 cut(s) 120
CviAII CATG 1 cut(s) 191
CviJI RGCY 8 cut(s) 19, 93, 100, 200, 234, 244, 268, 278
CviKI_1 RGCY 8 cut(s) 19, 93, 100, 200, 234, 244, 268, 278
DdeI CTNAG 1 cut(s) 269
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 198, 232
Eam1104I CTCTTC 2 cut(s) 233, 290
EarI CTCTTC 2 cut(s) 233, 290
Eco130I CCWWGG 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 244
Eco57I CTGAAG 2 cut(s) 73, 122
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 1 cut(s) 194
FaiI YATR 8 cut(s) 40, 70, 77, 79, 192, 203, 264, 334
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 1 cut(s) 190
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 94, 129
Fsp4HI GCNGC 2 cut(s) 94, 129
GluI GCNGC 2 cut(s) 94, 129
HaeIII GGCC 3 cut(s) 200, 234, 244
HapII CCGG 1 cut(s) 235
HgaI GACGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 194
HpaII CCGG 1 cut(s) 235
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 6 cut(s) 81, 128, 138, 293, 309, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 6 cut(s) 82, 148, 166, 248, 288, 310
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 147, 302
MaeIII GTNAC 1 cut(s) 183
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 3 cut(s) 103, 250, 277
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 1 cut(s) 213
MluNI TGGCCA 1 cut(s) 200
MnlI CCTC 2 cut(s) 59, 234
Mox20I TGGCCA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 200
MseI TTAA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 125
NcoI CCATGG 1 cut(s) 190
NdeI CATATG 1 cut(s) 77
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 194
PceI AGGCCT 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 107
PflMI CCANNNNNTGG 2 cut(s) 196, 207
PkrI GCNGC 2 cut(s) 95, 130
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 94, 129
Sau3AI GATC 1 cut(s) 280
SetI ASST 3 cut(s) 15, 185, 329
SfaNI GCATC 2 cut(s) 147, 302
SfcI CTRYAG 2 cut(s) 14, 126
SgeI CNNG 9 cut(s) 109, 147, 189, 193, 203, 247, 258, 302, 315
Sse9I AATT 1 cut(s) 213
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 1 cut(s) 94
StuI AGGCCT 1 cut(s) 244
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 230
TasI AATT 1 cut(s) 213
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 160
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 1 cut(s) 160
Van91I CCANNNNNTGG 2 cut(s) 196, 207
XapI RAATTY 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.