RLG00000013662

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011601
Physical Location & Seq
Forward (+)
35333360 .. 35333776
417 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013662

Sequence Viewer

Length: 417 bp
ATGGACGACACTATCAACCGTGACCTGATTGATAGCAGTGAACACGGTGATGGTGATGATTCCTTGTGCTTTAAAGATGATGAAACTTATGAATCCCATTGTATGTATGTCATGAATGTAATATTAAGTGGCACTGCACGTCTCAATGTCCTCTTACCTACAGCCACCATTCTTTCTTTCACCATATTTGCTCCTCTCCTTACCAATGATGGCATATGCACTGACTTCAGCCGCTGGCTGATGGATTTCTTCATTGCCCTTTCTGCAGCGACCTGCATCATTTTCACATTCACTGATAGCTTTAAAACAGCGACGGGTAGGTTATACTATGGAAGTATGGAGTGGCCATATTTCGGGGAATTTGGACTTTCAATGGTGGCCGGAAGAGGCCTTGCGTTCCATTTGATTATAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

139

Amino Acids

15.39

Weight (kDa)

4.27

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 44 - 113 1.5e-22 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 281
AciI CCGC 1 cut(s) 232
AcoI YGGCCR 2 cut(s) 344, 378
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 1 cut(s) 372
AjiI CACGTC 1 cut(s) 140
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 234
AoxI GGCC 3 cut(s) 344, 378, 388
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 59, 65, 172
BalI TGGCCA 1 cut(s) 346
BbvI GCAGC 1 cut(s) 278
BccI CCATC 3 cut(s) 44, 203, 235
BcoDI GTCTC 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 159, 264
BfuAI ACCTGC 1 cut(s) 281
BisI GCNGC 2 cut(s) 232, 267
BlsI GCNGC 2 cut(s) 233, 268
BmgBI CACGTC 1 cut(s) 140
BmsI GCATC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 3 cut(s) 346, 380, 390
BsiSI CCGG 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 146
BsmBI CGTCTC 1 cut(s) 146
BsnI GGCC 3 cut(s) 346, 380, 390
BspACI CCGC 1 cut(s) 232
BspANI GGCC 3 cut(s) 346, 380, 390
BspHI TCATGA 1 cut(s) 111
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 20, 47
Bst6I CTCTTC 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSFI CTRYAG 2 cut(s) 159, 264
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 3 cut(s) 346, 380, 390
BtrI CACGTC 1 cut(s) 140
BtsI GCAGTG 2 cut(s) 43, 132
BtsIMutI CAGTG 4 cut(s) 43, 132, 219, 291
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 234
CciI TCATGA 1 cut(s) 111
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 164, 231, 238, 300, 346, 380, 390, 414
CviKI_1 RGCY 8 cut(s) 164, 231, 238, 300, 346, 380, 390, 414
DraI TTTAAA 2 cut(s) 73, 304
EaeI YGGCCR 2 cut(s) 344, 378
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco147I AGGCCT 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 1 cut(s) 115
FatI CATG 1 cut(s) 111
FauNDI CATATG 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 232, 267
Fsp4HI GCNGC 2 cut(s) 232, 267
GluI GCNGC 2 cut(s) 232, 267
HaeIII GGCC 3 cut(s) 346, 380, 390
HapII CCGG 1 cut(s) 381
Hin1II CATG 1 cut(s) 115
HinfI GANTC 2 cut(s) 59, 92
HpaII CCGG 1 cut(s) 381
HphI GGTGA 3 cut(s) 59, 65, 172
Hpy166II GTNNAC 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 20, 47
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 4 cut(s) 137, 219, 266, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 1 cut(s) 115
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 38, 220, 286, 394
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 285
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 2 cut(s) 241, 396
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 1 cut(s) 359
MluNI TGGCCA 1 cut(s) 346
MnlI CCTC 3 cut(s) 161, 204, 380
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 3 cut(s) 72, 125, 303
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 234
MspI CCGG 1 cut(s) 381
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeI CATATG 1 cut(s) 215
NlaIII CATG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 20
PagI TCATGA 1 cut(s) 111
PceI AGGCCT 1 cut(s) 390
PfeI GAWTC 2 cut(s) 59, 92
PkrI GCNGC 2 cut(s) 233, 268
PstI CTGCAG 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 3 cut(s) 72, 125, 303
SatI GCNGC 2 cut(s) 232, 267
SetI ASST 6 cut(s) 27, 142, 160, 275, 302, 323
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 159, 264
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 1 cut(s) 359
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 1 cut(s) 232
SspI AATATT 1 cut(s) 123
StuI AGGCCT 1 cut(s) 390
TaaI ACNGT 2 cut(s) 20, 47
TaiI ACGT 1 cut(s) 142
TasI AATT 1 cut(s) 359
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 59, 92
Tru1I TTAA 3 cut(s) 72, 125, 303
Tru9I TTAA 3 cut(s) 72, 125, 303
TscAI CASTG 4 cut(s) 43, 139, 226, 298
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 96, 105, 128, 241
TspRI CASTG 4 cut(s) 43, 139, 226, 298
XapI RAATTY 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.