Rroxscaffold_7G00196080

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011601
Physical Location & Seq
Forward (+)
38770332 .. 38770980
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196080.1

Sequence Viewer

Length: 432 bp
ATGGATGACTCTATCAACCATGGCCTAATTGATAGCAGTGAACACGGTGATGGTGATGATTACTTGTGCTTTAAAGATGATGACACTGATGAATCCCATTCGACCGGCAGGTTATACTATGGAGTAGCCACATTTCGGGGAATTTGGACTTTCAATGGTGGCCGGAAGAGGCCTTGCGTTCCATCTGATTATAGGCTGAGATGGGCTGATCTCTTCCATGCATCACTTTCTCTGGTTGCATTTCTAACATTTGCCGGTTCACATAATGTAGTGGGTTGTTATTATCCAGCAATGCCTAAGAGGATCACCAACAACCATCCTCTGGTGGTTGGGTTTGTAGTATCTTTCTTCTTTGCGTTGTTTCCTTCCAAGAGAAGGAGAATTGGTTATCCTTTTTTGTTGATGAGAGTTGCTTTGTACTGTAGACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF679

Protein Analysis

143

Amino Acids

16.37

Weight (kDa)

8.73

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 30 - 130 1.8e-28 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 424
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 3 cut(s) 135, 322, 375
AgsI TTSAA 1 cut(s) 154
AlwI GGATC 1 cut(s) 311
AoxI GGCC 3 cut(s) 22, 160, 170
ApoI RAATTY 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 59, 65, 298
BccI CCATC 4 cut(s) 44, 190, 195, 324
BfmI CTRYAG 1 cut(s) 421
BfuAI ACCTGC 1 cut(s) 99
BmsI GCATC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 322, 375
Bse118I RCCGGY 2 cut(s) 104, 254
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 2 cut(s) 10, 316
BseLI CCNNNNNNNGG 3 cut(s) 135, 322, 375
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 24, 162, 172
BsiEI CGRYCG 1 cut(s) 105
BsiSI CCGG 3 cut(s) 105, 163, 255
BslI CCNNNNNNNGG 3 cut(s) 135, 322, 375
BsnI GGCC 3 cut(s) 24, 162, 172
Bsp143I GATC 2 cut(s) 208, 303
Bsp19I CCATGG 1 cut(s) 19
BspANI GGCC 3 cut(s) 24, 162, 172
BspCNI CTCAG 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 99
BspPI GGATC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 2 cut(s) 104, 254
BssAI RCCGGY 2 cut(s) 104, 254
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 208, 303
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 2 cut(s) 47, 422
Bst6I CTCTTC 2 cut(s) 161, 218
BstDEI CTNAG 2 cut(s) 197, 297
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 2 cut(s) 10, 316
BstKTI GATC 2 cut(s) 211, 306
BstMBI GATC 2 cut(s) 208, 303
BstMCI CGRYCG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 421
BsuRI GGCC 3 cut(s) 24, 162, 172
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 2 cut(s) 10, 316
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 84
BveI ACCTGC 1 cut(s) 99
Cfr10I RCCGGY 2 cut(s) 104, 254
Csp6I GTAC 1 cut(s) 418
CviAII CATG 2 cut(s) 20, 218
CviJI RGCY 6 cut(s) 24, 128, 162, 172, 196, 206
CviKI_1 RGCY 6 cut(s) 24, 128, 162, 172, 196, 206
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 197, 297
DpnI GATC 2 cut(s) 210, 305
DpnII GATC 2 cut(s) 208, 303
DraI TTTAAA 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 2 cut(s) 161, 218
EarI CTCTTC 2 cut(s) 161, 218
Eco130I CCWWGG 1 cut(s) 19
Eco147I AGGCCT 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 23, 221
FaiI YATR 6 cut(s) 21, 115, 120, 192, 219, 264
FatI CATG 2 cut(s) 19, 217
FblI GTMKAC 1 cut(s) 424
FokI GGATG 2 cut(s) 17, 303
HaeIII GGCC 3 cut(s) 24, 162, 172
HapII CCGG 3 cut(s) 105, 163, 255
Hin1II CATG 2 cut(s) 23, 221
HinfI GANTC 2 cut(s) 8, 92
HpaII CCGG 3 cut(s) 105, 163, 255
HphI GGTGA 3 cut(s) 59, 65, 298
Hpy166II GTNNAC 3 cut(s) 41, 260, 425
Hpy188I TCNGA 1 cut(s) 187
Hpy8I GTNNAC 3 cut(s) 41, 260, 425
HpyAV CCTTC 2 cut(s) 369, 375
HpyCH4III ACNGT 2 cut(s) 47, 422
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 2 cut(s) 221, 239
HpyF3I CTNAG 2 cut(s) 197, 297
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 2 cut(s) 23, 221
Kzo9I GATC 2 cut(s) 208, 303
LpnPI CCDG 7 cut(s) 94, 118, 176, 218, 268, 300, 308
LweI GCATC 1 cut(s) 230
MaeII ACGT 1 cut(s) 427
MalI GATC 2 cut(s) 210, 305
MboI GATC 2 cut(s) 208, 303
MboII GAAGA 3 cut(s) 178, 205, 340
MluCI AATT 3 cut(s) 27, 141, 381
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 3 cut(s) 162, 294, 330
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 2 cut(s) 72, 430
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 3 cut(s) 105, 163, 255
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 208, 303
NlaIII CATG 2 cut(s) 23, 221
NsiI ATGCAT 1 cut(s) 223
PceI AGGCCT 1 cut(s) 172
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 72, 430
Sau3AI GATC 2 cut(s) 208, 303
SchI GAGTC 1 cut(s) 2
SetI ASST 2 cut(s) 113, 430
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 3 cut(s) 27, 141, 381
SseBI AGGCCT 1 cut(s) 172
StuI AGGCCT 1 cut(s) 172
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 47, 422
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 101
TasI AATT 3 cut(s) 27, 141, 381
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 72, 430
Tru9I TTAA 2 cut(s) 72, 430
TscAI CASTG 2 cut(s) 43, 91
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 43, 91
Van91I CCANNNNNTGG 1 cut(s) 322
XapI RAATTY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 424
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.