RchiOBHm_Chr7g0184221

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013768
Physical Location & Seq
Reverse (-)
4891110 .. 4892246
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16438

Sequence Viewer

Length: 411 bp
ATGCAATACCTCCTGGCGGAGCTAATATCCGGCATCCTCTCCTGGCTTCCGGTAAAGGACTTAATCAGATGCACATCGGTTTCCAAACTGTGGAATAGCATCGTCCGCAGCAAACTGTTCATCAAAGAGCATAACCAACGCGCCATCACTACCAACAATGATTGCACCCTCATATATATTAGTTGTTTTCGTGATCATTTCTCTTCATTGGCATTTTCAGCTTGTTCTGATACGTTCAGCAACGAAGAGCCACTCAAGCATCCAATATATTCTGCCGAAGAGAGGGATCGACTTGGGCTTGATACTATGTCATTACTGCTATTGATTTTACTTGACGTTGAAACAAACCGCCATATGTTGACTGAGGGTAAGGGCTACCTATTTTTGTGGAATCCAATGATTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

136

Amino Acids

15.67

Weight (kDa)

6.05

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 40 8e-08 F-box domain
F-box-like PF12937 7 - 38 5.2e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccII CGCG 1 cut(s) 141
AciI CCGC 3 cut(s) 17, 106, 349
AclWI GGATC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 16, 90, 282
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 2 cut(s) 12, 41
AluBI AGCT 2 cut(s) 22, 221
AluI AGCT 2 cut(s) 22, 221
AlwI GGATC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 14, 43
BclI TGATCA 1 cut(s) 193
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 14, 43
BmrFI CCNGG 2 cut(s) 14, 43
BmsI GCATC 4 cut(s) 42, 59, 108, 268
BpuEI CTTGAG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 90, 282
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 2 cut(s) 14, 43
BseGI GGATG 2 cut(s) 33, 259
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 16, 90, 282
BseMII CTCAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 141
BsiSI CCGG 2 cut(s) 30, 50
BslI CCNNNNNNNGG 3 cut(s) 16, 90, 282
Bsp143I GATC 2 cut(s) 193, 286
BspACI CCGC 3 cut(s) 17, 106, 349
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 141
BspPI GGATC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 240
BssMI GATC 2 cut(s) 193, 286
Bst2UI CCWGG 2 cut(s) 14, 43
Bst4CI ACNGT 2 cut(s) 90, 117
Bst6I CTCTTC 3 cut(s) 208, 240, 273
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 33, 259
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 196, 289
BstMBI GATC 2 cut(s) 193, 286
BstMWI GCNNNNNNNGC 3 cut(s) 105, 218, 256
BstNI CCWGG 2 cut(s) 14, 43
BstSCI CCNGG 2 cut(s) 12, 41
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 33, 259
CfoI GCGC 1 cut(s) 143
CviJI RGCY 6 cut(s) 22, 46, 221, 250, 298, 375
CviKI_1 RGCY 6 cut(s) 22, 46, 221, 250, 298, 375
DdeI CTNAG 1 cut(s) 363
DpnI GATC 2 cut(s) 195, 288
DpnII GATC 2 cut(s) 193, 286
Eam1104I CTCTTC 3 cut(s) 208, 240, 273
EarI CTCTTC 3 cut(s) 208, 240, 273
EciI GGCGGA 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 12, 41
FaiI YATR 8 cut(s) 132, 173, 175, 177, 268, 308, 354, 356
FauNDI CATATG 1 cut(s) 354
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 20, 246
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 109
HapII CCGG 2 cut(s) 30, 50
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 1 cut(s) 391
HpaII CCGG 2 cut(s) 30, 50
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 2 cut(s) 68, 229
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 360
HpyCH4III ACNGT 2 cut(s) 90, 117
HpyCH4IV ACGT 2 cut(s) 233, 336
HpyCH4V TGCA 4 cut(s) 4, 72, 165, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 218, 256
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 233, 336
HspAI GCGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 193, 286
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 5 cut(s) 26, 28, 43, 55, 63
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 4 cut(s) 42, 59, 108, 268
MaeII ACGT 2 cut(s) 233, 336
MalI GATC 2 cut(s) 195, 288
MboI GATC 2 cut(s) 193, 286
MboII GAAGA 3 cut(s) 195, 257, 290
MluCI AATT 1 cut(s) 406
MnlI CCTC 5 cut(s) 20, 47, 179, 276, 358
MseI TTAA 2 cut(s) 62, 409
MspI CCGG 2 cut(s) 30, 50
MspR9I CCNGG 2 cut(s) 14, 43
MvaI CCWGG 2 cut(s) 14, 43
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 105, 218, 256
NdeI CATATG 1 cut(s) 354
NdeII GATC 2 cut(s) 193, 286
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 12, 41
PspGI CCWGG 2 cut(s) 12, 41
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 62, 409
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 2 cut(s) 193, 286
ScrFI CCNGG 2 cut(s) 14, 43
SetI ASST 6 cut(s) 12, 24, 223, 236, 339, 381
SfaNI GCATC 4 cut(s) 42, 59, 108, 268
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 406
SsiI CCGC 3 cut(s) 17, 106, 349
StyD4I CCNGG 2 cut(s) 12, 41
TaaI ACNGT 2 cut(s) 90, 117
TaiI ACGT 2 cut(s) 236, 339
TaqI TCGA 1 cut(s) 289
TasI AATT 1 cut(s) 406
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 62, 409
Tru9I TTAA 2 cut(s) 62, 409
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 109, 195
Van91I CCANNNNNTGG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.