Rh7CG155400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013768
Physical Location & Seq
Forward (+)
12756739 .. 12760602
3864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG155400.1

Sequence Viewer

Length: 588 bp
ATGCCGCTGTCTAAAGGAGCCGTGTTGAGCTCATCGAATAAGCAATCTGTTGCTTGGTGTTTCCCCTCCAAGCTGAAGCAGAGACGGCGGAAGAATTCTGCCCTGCCACCAAAATCTCAATCTCAGTCGGCTTGGGTGATGAAAAAGGTAGCATCTGATTATGAGGCAGGTCGTCACTCCATTGTAACTTTTGACCTAGTGAGGAAGGAGTTTCATGGCTTTCCTCTTCCCCGACCATTTAAAAATTTTGCGCGCGGAGAATTGGTGGTGTTGGGAGGCCTGTTATCCATTTGGTATGAAAACTGGGTTTGGATTATGAAGGAAGAATATTCTTGGACTAAGCTTCACTCTTTGCTCTTCAGTTCTGCCCAGCCTCTATCGTTTGATGGTGATCGGGGGAGGGTTCTCTTGAAAGTTGAGCTGAGTAATGGTGGTGCACGGCTTGAGTGGTTCACTTTAAAGACAGGAGAGATGACAAAGATTGATGGGTGCTGTACTCTCCCAGGTTCAGGTGTTCATGTTTGTGAGGGAAACATTCGTCTTCTCCTCGATGGTCATCCTGATGGGAAGCATGGTTACTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

195

Amino Acids

21.99

Weight (kDa)

9.61

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccII CGCG 2 cut(s) 253, 255
AciI CCGC 3 cut(s) 5, 88, 255
AcsI RAATTY 2 cut(s) 94, 244
AcuI CTGAAG 2 cut(s) 95, 343
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 1 cut(s) 509
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 1 cut(s) 502
AluBI AGCT 4 cut(s) 30, 73, 343, 421
AluI AGCT 4 cut(s) 30, 73, 343, 421
Alw21I GWGCWC 2 cut(s) 32, 439
Alw26I GTCTC 1 cut(s) 76
Alw44I GTGCAC 1 cut(s) 435
AoxI GGCC 1 cut(s) 277
ApaLI GTGCAC 1 cut(s) 435
ApoI RAATTY 2 cut(s) 94, 244
AspLEI GCGC 2 cut(s) 253, 255
AsuHPI GGTGA 2 cut(s) 148, 401
BaeGI GKGCMC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 32
BarI GAAGNNNNNNTAC 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 2 cut(s) 32, 439
BccI CCATC 4 cut(s) 380, 479, 545, 557
BceAI ACGGC 3 cut(s) 5, 101, 455
BciT130I CCWGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 504
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 464
BsaBI GATNNNNATC 2 cut(s) 390, 555
BsaJI CCNNGG 1 cut(s) 502
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 308
Bse8I GATNNNNATC 2 cut(s) 390, 555
BseBI CCWGG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 1 cut(s) 556
BseJI GATNNNNATC 2 cut(s) 390, 555
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 2 cut(s) 137, 413
BseNI ACTGG 1 cut(s) 308
BsePI GCGCGC 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 439
BseYI CCCAGC 1 cut(s) 369
Bsh1236I CGCG 2 cut(s) 253, 255
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 2 cut(s) 32, 439
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 76
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 32, 439
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 3 cut(s) 5, 88, 255
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 2 cut(s) 136, 414
BspFNI CGCG 2 cut(s) 253, 255
BspLI GGNNCC 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 502
BssHII GCGCGC 1 cut(s) 251
BssMI GATC 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 504
Bst6I CTCTTC 2 cut(s) 231, 362
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 123, 339, 422
BstF5I GGATG 1 cut(s) 556
BstFNI CGCG 2 cut(s) 253, 255
BstHHI GCGC 2 cut(s) 253, 255
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 2 cut(s) 253, 255
BstV2I GAAGAC 1 cut(s) 533
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 556
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 2 cut(s) 253, 255
Csp6I GTAC 1 cut(s) 495
CviAII CATG 3 cut(s) 215, 518, 572
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 3 cut(s) 123, 339, 422
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
DraI TTTAAA 2 cut(s) 241, 459
Eam1104I CTCTTC 2 cut(s) 231, 362
EarI CTCTTC 2 cut(s) 231, 362
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 95, 343
EcoICRI GAGCTC 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 3 cut(s) 218, 521, 575
FaiI YATR 6 cut(s) 162, 216, 297, 317, 519, 573
FatI CATG 3 cut(s) 214, 517, 571
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 543
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 252, 254
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 373
HaeIII GGCC 1 cut(s) 279
HhaI GCGC 2 cut(s) 253, 255
Hin1II CATG 3 cut(s) 218, 521, 575
Hin6I GCGC 2 cut(s) 251, 253
HinP1I GCGC 2 cut(s) 251, 253
HindIII AAGCTT 1 cut(s) 341
HphI GGTGA 2 cut(s) 148, 401
Hpy166II GTNNAC 2 cut(s) 437, 453
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 409, 560
Hpy8I GTNNAC 2 cut(s) 437, 453
HpyAV CCTTC 2 cut(s) 199, 313
HpyCH4V TGCA 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 123, 339, 422
Hsp92II CATG 3 cut(s) 218, 521, 575
HspAI GCGC 2 cut(s) 251, 253
Kzo9I GATC 1 cut(s) 391
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 1 cut(s) 17
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 3 cut(s) 173, 184, 575
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 5 cut(s) 103, 218, 335, 349, 533
MhlI GDGCHC 2 cut(s) 32, 439
MluCI AATT 3 cut(s) 94, 244, 260
MnlI CCTC 9 cut(s) 76, 157, 195, 234, 269, 384, 393, 520, 557
MseI TTAA 2 cut(s) 240, 458
MslI CAYNNNNRTG 2 cut(s) 522, 561
MspA1I CMGCKG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 504
MvnI CGCG 2 cut(s) 253, 255
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 1 cut(s) 391
NlaIII CATG 3 cut(s) 218, 521, 575
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 173
PauI GCGCGC 1 cut(s) 251
PceI AGGCCT 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 19
PteI GCGCGC 1 cut(s) 251
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 2 cut(s) 522, 561
SacI GAGCTC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 240, 458
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 504
SduI GDGCHC 2 cut(s) 32, 439
SetI ASST 9 cut(s) 32, 75, 150, 172, 198, 345, 423, 508, 514
SfaNI GCATC 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 522, 561
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 3 cut(s) 94, 244, 260
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 3 cut(s) 5, 88, 255
SspI AATATT 1 cut(s) 329
SspMI CTAG 1 cut(s) 197
SstI GAGCTC 1 cut(s) 32
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 502
TaqI TCGA 2 cut(s) 35, 549
TasI AATT 3 cut(s) 94, 244, 260
TatI WGTACW 1 cut(s) 494
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 240, 458
Tru9I TTAA 2 cut(s) 240, 458
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 5 cut(s) 155, 203, 312, 332, 506
VneI GTGCAC 1 cut(s) 435
XapI RAATTY 2 cut(s) 94, 244
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.