Rmu_sc0006707.1_g000026

rRNA processing

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006707.1
Physical Location & Seq
Forward (+)
104326 .. 106569
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006707.1_g000026.1.cds

Sequence Viewer

Length: 1533 bp
atggcagattttatgtttcaaggaaagttgagggagactgaaaatgtcccaactgtaagaaggtttcctcgatcttcaccggcaagttcagtcaatcggctagtttctccgtcaggatctggtgtcggaggtggaaggcactcactggagcagttgggtttgggacttggcggttataaaacagttactaattctggttctcaggcagttatggattatttggtgatggacagctgtgcaggcccactttttctttccaaaatggctagtcaaggcccatcttctctagccccttcttttgagaggcctttgcttattcccacatgtcaaaaggctaatgttgatatttttccacccgccgaagcagttggtgaatcttatcgccaaacaccagtttctcagggtcctcttgcaataaataattcactcatttctcgtggacctcatcgccttggagaagacaacttagtggaggacgcaaagggaatgaagcggtctcatacactcgtcgacgggctcaaactgaagattccatccagagaggtaagtcaaagaaatcttatggggggaaattgggtgggcgttctcgctcatcccaagatccatgaaatttctcaattggaatgtccggggtcttgcgagactccgggccctagggaattacctcggcagggagaagcagttaaagtcagcctgttggcaagtttttggtggggcaggcgtaatgggaagaagggaattcattggctccagtggttgaaactatgtagaaacaagctgcaagggggtttgggcttcagagattttgtggagttcaatcaagcccttctagcaaaacaaggttggagatttctttcatcgccagactctcttgttgcacggtattcaaagggcagcacagaggctgaggccattctttctattcctttggcacatcaaccagttccttatgggctttgttggcactacaccaaacatggtcacttcaatgttaagtctggatacagattggctattcaaaaaagagagtggcttgcatgtggtgagcgcagcagacaccaaggatccttgaatgacctatttcaatatgcaatctctattctccctaagtctgagatggctctggtggtgtggttatgtcgacgaatatggcaagcaagaaatgaagaattatttcaacacaagtacatgagtgctccggccctgccgtcccaggttcttacttcccattcagattttgtttctgctaattctgtttctactcaaagtttgaatgtccgagctcctagctgttgttgggtcaaacctcagtttcctttcttaaagttaaatgtggatggtgccttatcttatgctacaagcttgaggggtttgggtgcaattttaagggatgaaaacggagatttactgctagctgtgtctaaaggattggtcggacgtttcaaaaggctgttgaattgtatgcagcagctgtgggcctccaagttctttctcaggctgggtttcggtccttcaatattatactggaattag

Protein Analysis

510

Amino Acids

56.5

Weight (kDa)

9.71

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 1340
AccI GTMKAC 2 cut(s) 510, 1141
AciI CCGC 3 cut(s) 171, 357, 493
AclWI GGATC 4 cut(s) 124, 595, 1059, 1072
AcsI RAATTY 2 cut(s) 609, 738
AcuI CTGAAG 2 cut(s) 545, 781
AfaI GTAC 1 cut(s) 1187
AfiI CCNNNNNNNGG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 1212
AluBI AGCT 7 cut(s) 234, 778, 1283, 1290, 1362, 1415, 1471
AluI AGCT 7 cut(s) 234, 778, 1283, 1290, 1362, 1415, 1471
Alw21I GWGCWC 2 cut(s) 1198, 1285
Alw26I GTCTC 3 cut(s) 29, 501, 635
AlwI GGATC 4 cut(s) 124, 595, 1059, 1072
AlwNI CAGNNNCTG 3 cut(s) 119, 905, 1471
AoxI GGCC 7 cut(s) 241, 274, 305, 649, 909, 1200, 1476
ApaI GGGCCC 1 cut(s) 653
ApeKI GCWGC 5 cut(s) 778, 894, 1050, 1465, 1468
ApoI RAATTY 2 cut(s) 609, 738
Asp700I GAANNNNTTC 1 cut(s) 1173
AspA2I CCTAGG 1 cut(s) 653
AspLEI GCGC 1 cut(s) 1050
AspS9I GGNCC 9 cut(s) 242, 275, 404, 440, 649, 650, 1201, 1476, 1508
AsuC2I CCSGG 2 cut(s) 630, 648
AsuHPI GGTGA 4 cut(s) 69, 235, 383, 1055
AsuNHI GCTAGC 1 cut(s) 1411
AvaII GGWCC 3 cut(s) 404, 440, 1508
AvrII CCTAGG 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 653
BamHI GGATCC 1 cut(s) 1064
BanI GGYRCC 1 cut(s) 1340
BanII GRGCYC 3 cut(s) 519, 653, 1285
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 1198, 1285
BbvCI CCTCAGC 1 cut(s) 906
BbvI GCAGC 5 cut(s) 765, 906, 1062, 1477, 1480
BccI CCATC 5 cut(s) 220, 286, 541, 1111, 1331
BceAI ACGGC 1 cut(s) 1192
BciT130I CCWGG 1 cut(s) 1214
BciVI GTATCC 1 cut(s) 995
BcnI CCSGG 2 cut(s) 630, 648
BcoDI GTCTC 3 cut(s) 29, 501, 635
BfaI CTAG 7 cut(s) 101, 267, 287, 654, 830, 1287, 1412
BfuI GTATCC 1 cut(s) 995
BisI GCNGC 5 cut(s) 779, 895, 1051, 1466, 1469
BlnI CCTAGG 1 cut(s) 653
BlsI GCNGC 5 cut(s) 780, 896, 1052, 1467, 1470
Bme1390I CCNGG 3 cut(s) 630, 648, 1214
Bme18I GGWCC 3 cut(s) 404, 440, 1508
BmgT120I GGNCC 9 cut(s) 242, 275, 404, 440, 649, 650, 1201, 1476, 1508
BmiI GGNNCC 5 cut(s) 405, 651, 749, 1066, 1342
BmrFI CCNGG 3 cut(s) 630, 648, 1214
BmtI GCTAGC 1 cut(s) 1415
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 2 cut(s) 167, 734
Bpu10I CCTNAGC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 1384
BpuMI CCSGG 2 cut(s) 630, 648
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 6 cut(s) 451, 629, 653, 665, 1060, 1212
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 5 cut(s) 150, 392, 751, 941, 1529
BseBI CCWGG 1 cut(s) 1214
BseDI CCNNGG 6 cut(s) 451, 629, 653, 665, 1060, 1212
BseGI GGATG 4 cut(s) 533, 592, 1342, 1396
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMII CTCAG 6 cut(s) 215, 413, 897, 1104, 1322, 1507
BseNI ACTGG 5 cut(s) 150, 392, 751, 941, 1529
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 5 cut(s) 765, 906, 1062, 1477, 1480
BseYI CCCAGC 1 cut(s) 1498
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 7 cut(s) 243, 276, 307, 651, 911, 1202, 1478
BshNI GGYRCC 1 cut(s) 1340
BsiHKAI GWGCWC 2 cut(s) 1198, 1285
BsiSI CCGG 4 cut(s) 80, 629, 647, 1199
BslFI GGGAC 3 cut(s) 32, 177, 1195
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 3 cut(s) 29, 501, 635
BsmFI GGGAC 3 cut(s) 32, 177, 1195
BsnI GGCC 7 cut(s) 243, 276, 307, 651, 911, 1202, 1478
Bso31I GGTCTC 1 cut(s) 501
Bsp120I GGGCCC 1 cut(s) 649
Bsp1286I GDGCHC 4 cut(s) 519, 653, 1198, 1285
Bsp143I GATC 4 cut(s) 71, 116, 600, 1064
BspACI CCGC 3 cut(s) 171, 357, 493
BspANI GGCC 7 cut(s) 243, 276, 307, 651, 911, 1202, 1478
BspCNI CTCAG 6 cut(s) 214, 412, 898, 1105, 1321, 1506
BspLI GGNNCC 5 cut(s) 405, 651, 749, 1066, 1342
BspOI GCTAGC 1 cut(s) 1415
BspPI GGATC 4 cut(s) 124, 595, 1059, 1072
BspT107I GGYRCC 1 cut(s) 1340
BspTNI GGTCTC 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 5 cut(s) 150, 392, 751, 941, 1529
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 6 cut(s) 451, 629, 653, 665, 1060, 1212
BssMI GATC 4 cut(s) 71, 116, 600, 1064
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 3 cut(s) 451, 653, 1060
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 1214
Bst4CI ACNGT 3 cut(s) 55, 184, 882
BstC8I GCNNGC 5 cut(s) 241, 719, 1035, 1155, 1413
BstDEI CTNAG 8 cut(s) 201, 399, 466, 906, 1107, 1113, 1308, 1493
BstF5I GGATG 4 cut(s) 533, 592, 1342, 1396
BstHHI GCGC 1 cut(s) 1050
BstKTI GATC 4 cut(s) 74, 119, 603, 1067
BstMAI GTCTC 3 cut(s) 29, 501, 635
BstMBI GATC 4 cut(s) 71, 116, 600, 1064
BstMWI GCNNNNNNNGC 3 cut(s) 240, 830, 961
BstNI CCWGG 1 cut(s) 1214
BstNSI RCATGY 2 cut(s) 327, 1041
BstSCI CCNGG 3 cut(s) 628, 646, 1212
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 5 cut(s) 765, 906, 1062, 1477, 1480
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 3 cut(s) 116, 600, 1064
BstYI RGATCY 3 cut(s) 116, 600, 1064
BsuI GTATCC 1 cut(s) 995
BsuRI GGCC 7 cut(s) 243, 276, 307, 651, 911, 1202, 1478
BtgZI GCGATG 2 cut(s) 431, 843
BtsCI GGATG 4 cut(s) 533, 592, 1342, 1396
BtsIMutI CAGTG 2 cut(s) 143, 758
Cac8I GCNNGC 5 cut(s) 241, 719, 1035, 1155, 1413
CaiI CAGNNNCTG 3 cut(s) 119, 905, 1471
CfoI GCGC 1 cut(s) 1050
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 9 cut(s) 242, 275, 404, 440, 649, 650, 1201, 1476, 1508
CseI GACGC 1 cut(s) 485
Csp6I GTAC 1 cut(s) 1186
CviAII CATG 5 cut(s) 324, 605, 977, 1038, 1189
CviQI GTAC 1 cut(s) 1186
DdeI CTNAG 8 cut(s) 201, 399, 466, 906, 1107, 1113, 1308, 1493
DpnI GATC 4 cut(s) 73, 118, 602, 1066
DpnII GATC 4 cut(s) 71, 116, 600, 1064
Ecl136II GAGCTC 1 cut(s) 1283
Eco130I CCWWGG 3 cut(s) 451, 653, 1060
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 3 cut(s) 519, 653, 1285
Eco31I GGTCTC 1 cut(s) 501
Eco47I GGWCC 3 cut(s) 404, 440, 1508
Eco53kI GAGCTC 1 cut(s) 1283
Eco57I CTGAAG 2 cut(s) 545, 781
EcoICRI GAGCTC 1 cut(s) 1283
EcoO109I RGGNCCY 2 cut(s) 404, 650
EcoRI GAATTC 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 1212
EcoT14I CCWWGG 3 cut(s) 451, 653, 1060
EcoT38I GRGCYC 3 cut(s) 519, 653, 1285
ErhI CCWWGG 3 cut(s) 451, 653, 1060
FaeI CATG 5 cut(s) 327, 608, 980, 1041, 1192
FaqI GGGAC 3 cut(s) 32, 177, 1195
FatI CATG 5 cut(s) 323, 604, 976, 1037, 1188
FauI CCCGC 1 cut(s) 364
FblI GTMKAC 2 cut(s) 510, 1141
Fnu4HI GCNGC 5 cut(s) 779, 895, 1051, 1466, 1469
FokI GGATG 4 cut(s) 520, 579, 1349, 1403
FriOI GRGCYC 3 cut(s) 519, 653, 1285
Fsp4HI GCNGC 5 cut(s) 779, 895, 1051, 1466, 1469
FspBI CTAG 7 cut(s) 101, 267, 287, 654, 830, 1287, 1412
GlaI GCGC 1 cut(s) 1049
GluI GCNGC 5 cut(s) 779, 895, 1051, 1466, 1469
GsaI CCCAGC 1 cut(s) 1502
GsuI CTGGAG 2 cut(s) 167, 734
HaeIII GGCC 7 cut(s) 243, 276, 307, 651, 911, 1202, 1478
HapII CCGG 4 cut(s) 80, 629, 647, 1199
HgaI GACGC 1 cut(s) 485
HhaI GCGC 1 cut(s) 1050
Hin1II CATG 5 cut(s) 327, 608, 980, 1041, 1192
Hin6I GCGC 1 cut(s) 1048
HinP1I GCGC 1 cut(s) 1048
HincII GTYRAC 2 cut(s) 511, 1142
HindII GTYRAC 2 cut(s) 511, 1142
HindIII AAGCTT 1 cut(s) 1360
HinfI GANTC 4 cut(s) 374, 529, 643, 866
HpaII CCGG 4 cut(s) 80, 629, 647, 1199
HphI GGTGA 4 cut(s) 69, 235, 383, 1055
Hpy166II GTNNAC 3 cut(s) 440, 511, 1142
Hpy188I TCNGA 6 cut(s) 128, 800, 1114, 1234, 1280, 1436
Hpy188III TCNNGA 3 cut(s) 114, 537, 999
Hpy8I GTNNAC 3 cut(s) 440, 511, 1142
Hpy99I CGWCG 3 cut(s) 512, 515, 1146
HpyAV CCTTC 6 cut(s) 54, 129, 303, 727, 836, 1521
HpyCH4III ACNGT 3 cut(s) 55, 184, 882
HpyCH4IV ACGT 1 cut(s) 1438
HpyCH4V TGCA 8 cut(s) 239, 413, 781, 878, 1037, 1091, 1379, 1465
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 830, 961
HpyF3I CTNAG 8 cut(s) 201, 399, 466, 906, 1107, 1113, 1308, 1493
HpySE526I ACGT 1 cut(s) 1438
Hsp92II CATG 5 cut(s) 327, 608, 980, 1041, 1192
HspAI GCGC 1 cut(s) 1048
Kzo9I GATC 4 cut(s) 71, 116, 600, 1064
LmnI GCTCC 4 cut(s) 148, 753, 1201, 1288
Lsp1109I GCAGC 5 cut(s) 765, 906, 1062, 1477, 1480
MaeI CTAG 7 cut(s) 101, 267, 287, 654, 830, 1287, 1412
MaeII ACGT 1 cut(s) 1438
MaeIII GTNAC 2 cut(s) 184, 980
MalI GATC 4 cut(s) 73, 118, 602, 1066
MboI GATC 4 cut(s) 71, 116, 600, 1064
MboII GAAGA 6 cut(s) 66, 273, 470, 538, 742, 1178
MfeI CAATTG 1 cut(s) 617
MflI RGATCY 3 cut(s) 116, 600, 1064
MhlI GDGCHC 4 cut(s) 519, 653, 1198, 1285
MlyI GAGTC 2 cut(s) 637, 860
MmeI TCCRAC 3 cut(s) 106, 824, 1414
MroXI GAANNNNTTC 1 cut(s) 1173
MseI TTAA 5 cut(s) 684, 993, 1322, 1328, 1385
MslI CAYNNNNRTG 1 cut(s) 987
MspA1I CMGCKG 2 cut(s) 234, 1471
MspI CCGG 4 cut(s) 80, 629, 647, 1199
MspR9I CCNGG 3 cut(s) 630, 648, 1214
MunI CAATTG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 1214
MwoI GCNNNNNNNGC 3 cut(s) 240, 830, 961
NciI CCSGG 2 cut(s) 630, 648
NdeII GATC 4 cut(s) 71, 116, 600, 1064
NheI GCTAGC 1 cut(s) 1411
NlaIII CATG 5 cut(s) 327, 608, 980, 1041, 1192
NlaIV GGNNCC 5 cut(s) 405, 651, 749, 1066, 1342
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 980
NspI RCATGY 2 cut(s) 327, 1041
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 1173
PfeI GAWTC 2 cut(s) 374, 529
PkrI GCNGC 5 cut(s) 780, 896, 1052, 1467, 1470
PleI GAGTC 2 cut(s) 637, 860
PpsI GAGTC 2 cut(s) 637, 860
PpuMI RGGWCCY 1 cut(s) 404
PscI ACATGT 1 cut(s) 323
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 1285
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 1212
PspFI CCCAGC 1 cut(s) 1498
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 5 cut(s) 405, 651, 749, 1066, 1342
PspOMI GGGCCC 1 cut(s) 649
PspPI GGNCC 9 cut(s) 242, 275, 404, 440, 649, 650, 1201, 1476, 1508
PspPPI RGGWCCY 1 cut(s) 404
PstNI CAGNNNCTG 3 cut(s) 119, 905, 1471
PsuI RGATCY 3 cut(s) 116, 600, 1064
PvuII CAGCTG 2 cut(s) 234, 1471
RsaI GTAC 1 cut(s) 1187
RsaNI GTAC 1 cut(s) 1186
RseI CAYNNNNRTG 1 cut(s) 987
SacI GAGCTC 1 cut(s) 1285
SalI GTCGAC 2 cut(s) 509, 1140
SaqAI TTAA 5 cut(s) 684, 993, 1322, 1328, 1385
SatI GCNGC 5 cut(s) 779, 895, 1051, 1466, 1469
Sau3AI GATC 4 cut(s) 71, 116, 600, 1064
Sau96I GGNCC 9 cut(s) 242, 275, 404, 440, 649, 650, 1201, 1476, 1508
SchI GAGTC 2 cut(s) 637, 860
ScrFI CCNGG 3 cut(s) 630, 648, 1214
SduI GDGCHC 4 cut(s) 519, 653, 1198, 1285
SgrDI CGTCGACG 1 cut(s) 509
SinI GGWCC 3 cut(s) 404, 440, 1508
SmiMI CAYNNNNRTG 1 cut(s) 987
SmlI CTYRAG 1 cut(s) 1363
SmoI CTYRAG 1 cut(s) 1363
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 3 cut(s) 171, 357, 493
SspI AATATT 1 cut(s) 1518
SspMI CTAG 7 cut(s) 101, 267, 287, 654, 830, 1287, 1412
SstI GAGCTC 1 cut(s) 1285
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 3 cut(s) 628, 646, 1212
StyI CCWWGG 3 cut(s) 451, 653, 1060
TaaI ACNGT 3 cut(s) 55, 184, 882
TaiI ACGT 1 cut(s) 1441
TaqI TCGA 3 cut(s) 70, 510, 1141
TaqII GACCGA 1 cut(s) 1496
TatI WGTACW 1 cut(s) 1185
TfiI GAWTC 2 cut(s) 374, 529
Tru1I TTAA 5 cut(s) 684, 993, 1322, 1328, 1385
Tru9I TTAA 5 cut(s) 684, 993, 1322, 1328, 1385
TscAI CASTG 2 cut(s) 150, 758
TseFI GTSAC 1 cut(s) 980
TseI GCWGC 5 cut(s) 778, 894, 1050, 1465, 1468
Tsp45I GTSAC 1 cut(s) 980
TspDTI ATGAA 6 cut(s) 503, 621, 731, 846, 1179, 1407
TspGWI ACGGA 2 cut(s) 99, 1413
TspRI CASTG 2 cut(s) 150, 758
VpaK11BI GGWCC 3 cut(s) 404, 440, 1508
XapI RAATTY 2 cut(s) 609, 738
XceI RCATGY 2 cut(s) 327, 1041
XmaJI CCTAGG 1 cut(s) 653
XmiI GTMKAC 2 cut(s) 510, 1141
XmnI GAANNNNTTC 1 cut(s) 1173
XspI CTAG 7 cut(s) 101, 267, 287, 654, 830, 1287, 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.