RchiOBHm_Chr7g0195381

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
13236975 .. 13237370
396 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17473

Sequence Viewer

Length: 273 bp
ATGAAGGAAGAATATTCTTGGACTAAGCTTCACTCTTTGCTCTTCAGTTCTGCCCAGCCTCTATTGTTTGATGGTGATCGGGGGAGGGTTCTCTTGAAAGTTGAGCTGAGTAATGGTGGTGCACGGCTTGAGTGGTTCACTTTAAAGACAGGAGAGATGACAAAGATTGATGGGTGCTGTACTCTCCCAGGTTCAGGTGTTCATGTTTGTGAGGGAAACATTCGTCTTCTCCTCGATGGTCATCCTGATGGGAAGCATGGTTACTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.03

Weight (kDa)

6.39

Isoelectric Point (pI)

14.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 28
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 28, 106
AluI AGCT 2 cut(s) 28, 106
Alw21I GWGCWC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 124
BarI GAAGNNNNNNTAC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 124
BccI CCATC 4 cut(s) 65, 164, 230, 242
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 2 cut(s) 75, 240
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse8I GATNNNNATC 2 cut(s) 75, 240
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 2 cut(s) 75, 240
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 99
BspQI GCTCTTC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 24, 107
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 241
Csp6I GTAC 1 cut(s) 180
CviAII CATG 2 cut(s) 203, 257
CviJI RGCY 4 cut(s) 28, 58, 106, 127
CviKI_1 RGCY 4 cut(s) 28, 58, 106, 127
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 24, 107
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DraI TTTAAA 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 206, 260
FaiI YATR 2 cut(s) 204, 258
FatI CATG 2 cut(s) 202, 256
FokI GGATG 1 cut(s) 228
GsaI CCCAGC 1 cut(s) 58
Hin1II CATG 2 cut(s) 206, 260
HindIII AAGCTT 1 cut(s) 26
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 122, 138
Hpy188III TCNNGA 2 cut(s) 94, 245
Hpy8I GTNNAC 2 cut(s) 122, 138
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 24, 107
Hsp92II CATG 2 cut(s) 206, 260
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 6 cut(s) 68, 135, 174, 180, 201, 258
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 20, 34, 218
MhlI GDGCHC 1 cut(s) 124
MnlI CCTC 4 cut(s) 69, 78, 205, 242
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 2 cut(s) 207, 246
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 206, 260
PciSI GCTCTTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 187
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 2 cut(s) 207, 246
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 143
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 124
SetI ASST 4 cut(s) 30, 108, 193, 199
SmiMI CAYNNNNRTG 2 cut(s) 207, 246
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SspI AATATT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 187
TaqI TCGA 1 cut(s) 234
TatI WGTACW 1 cut(s) 179
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 17, 191
VneI GTGCAC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.