Rh7CG093400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013768
Physical Location & Seq
Reverse (-)
7029545 .. 7030090
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG093400.1

Sequence Viewer

Length: 546 bp
ATGGAGTACCTCCCGCAAGACCTAATATATGAAATTGTGTTACGACTCCCTGTGAAGGGTCTAATCCGATTTTCTTTTGTTTCGAAGCTATGGAATGCTGTGATCTACAGCAAAGACTTCATTAAAGAGCATCAGCAACGCCGCTCTATCAACAACTCCAAGAAAGATTTCACCCTCATACGCCATGGTGTTCTGTCCGGAGATTTTCATCACTTCTATGCAGCCTCCTTTTCTGCTGATACATTAGAGGAAGAACAACAAATCGAGCATCCAATATATTCCCTTGAAGAAGAGTATGGACTTGGGCTTGATACTCGTATCATTACTGTCTGCCATGGATTGGTTTTACTAGGTGTTCTGTATTATAGGAAGGCTACTAGTAATTATATGCACCTCTTTTTATGGAACCCGGTGATCGCAAAGCACAGATACATATCCCAGCCCATATGGCCAGAAGGAGAAGACCCGCATTTTACGTATGGAATAGGTTATCATTGTGACGAAGATGACTTAAAGGTGTTAGTTTTGAGGCAAACTGGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

181

Amino Acids

21.22

Weight (kDa)

6.04

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 340
AccBSI CCGCTC 1 cut(s) 144
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 3 cut(s) 14, 142, 467
AcoI YGGCCR 1 cut(s) 449
AfaI GTAC 2 cut(s) 8, 541
AfiI CCNNNNNNNGG 3 cut(s) 55, 56, 340
AgsI TTSAA 1 cut(s) 287
AhlI ACTAGT 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 2 cut(s) 163, 424
AsuII TTCGAA 1 cut(s) 83
BalI TGGCCA 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 233
BcnI CCSGG 1 cut(s) 410
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 2 cut(s) 350, 378
BfmI CTRYAG 1 cut(s) 106
BglI GCCNNNNNGGC 1 cut(s) 448
BisI GCNGC 2 cut(s) 142, 222
BlsI GCNGC 2 cut(s) 143, 223
Bme1390I CCNGG 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 139, 277
BpiI GAAGAC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 410
BsaAI YACGTR 2 cut(s) 477, 543
BsaBI GATNNNNATC 2 cut(s) 207, 433
BsaJI CCNNGG 2 cut(s) 184, 334
BsaWI WCCGGW 1 cut(s) 197
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 56, 340
Bse1I ACTGG 1 cut(s) 541
Bse8I GATNNNNATC 2 cut(s) 207, 433
BseAI TCCGGA 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 184, 334
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 2 cut(s) 207, 433
BseLI CCNNNNNNNGG 3 cut(s) 55, 56, 340
BseNI ACTGG 1 cut(s) 541
BseXI GCAGC 1 cut(s) 233
BseYI CCCAGC 1 cut(s) 438
BshFI GGCC 1 cut(s) 451
BsiSI CCGG 2 cut(s) 198, 410
BslI CCNNNNNNNGG 3 cut(s) 55, 56, 340
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 83
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 2 cut(s) 102, 414
Bsp19I CCATGG 2 cut(s) 184, 334
BspACI CCGC 3 cut(s) 14, 142, 467
BspANI GGCC 1 cut(s) 451
BspEI TCCGGA 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 184, 334
BssMI GATC 2 cut(s) 102, 414
BssT1I CCWWGG 2 cut(s) 184, 334
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 285
BstBAI YACGTR 2 cut(s) 477, 543
BstBI TTCGAA 1 cut(s) 83
BstDSI CCRYGG 2 cut(s) 184, 334
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 105, 417
BstMBI GATC 2 cut(s) 102, 414
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 408
BstSFI CTRYAG 1 cut(s) 106
BstSNI TACGTA 2 cut(s) 477, 543
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 468
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 2 cut(s) 184, 334
BtsCI GGATG 1 cut(s) 268
Csp6I GTAC 2 cut(s) 7, 540
CviAII CATG 2 cut(s) 185, 335
CviJI RGCY 6 cut(s) 88, 224, 307, 374, 442, 451
CviKI_1 RGCY 6 cut(s) 88, 224, 307, 374, 442, 451
CviQI GTAC 2 cut(s) 7, 540
DpnI GATC 2 cut(s) 104, 416
DpnII GATC 2 cut(s) 102, 414
EaeI YGGCCR 1 cut(s) 449
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco105I TACGTA 2 cut(s) 477, 543
Eco130I CCWWGG 2 cut(s) 184, 334
EcoT14I CCWWGG 2 cut(s) 184, 334
ErhI CCWWGG 2 cut(s) 184, 334
FaeI CATG 2 cut(s) 188, 338
FatI CATG 2 cut(s) 184, 334
FauI CCCGC 2 cut(s) 21, 474
FauNDI CATATG 1 cut(s) 446
Fnu4HI GCNGC 2 cut(s) 142, 222
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 142, 222
FspBI CTAG 2 cut(s) 350, 378
GluI GCNGC 2 cut(s) 142, 222
GsaI CCCAGC 1 cut(s) 442
HaeIII GGCC 1 cut(s) 451
HapII CCGG 2 cut(s) 198, 410
Hin1II CATG 2 cut(s) 188, 338
HinfI GANTC 1 cut(s) 45
HpaII CCGG 2 cut(s) 198, 410
HphI GGTGA 2 cut(s) 163, 424
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 198
HpyAV CCTTC 3 cut(s) 49, 364, 449
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 476, 542
HpyCH4V TGCA 2 cut(s) 221, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpySE526I ACGT 2 cut(s) 476, 542
Hsp92II CATG 2 cut(s) 188, 338
Kpn2I TCCGGA 1 cut(s) 197
Kzo9I GATC 2 cut(s) 102, 414
LpnPI CCDG 6 cut(s) 63, 211, 423, 452, 465, 522
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 2 cut(s) 139, 277
MaeI CTAG 2 cut(s) 350, 378
MaeII ACGT 2 cut(s) 476, 542
MaeIII GTNAC 2 cut(s) 39, 497
MalI GATC 2 cut(s) 104, 416
MbiI CCGCTC 1 cut(s) 144
MboI GATC 2 cut(s) 102, 414
MboII GAAGA 5 cut(s) 263, 299, 302, 473, 515
MlsI TGGCCA 1 cut(s) 451
MluCI AATT 2 cut(s) 33, 382
MluNI TGGCCA 1 cut(s) 451
MlyI GAGTC 1 cut(s) 39
MnlI CCTC 6 cut(s) 20, 185, 235, 241, 404, 522
Mox20I TGGCCA 1 cut(s) 451
MroI TCCGGA 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 167
MscI TGGCCA 1 cut(s) 451
MseI TTAA 2 cut(s) 123, 512
MslI CAYNNNNRTG 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 451
MspI CCGG 2 cut(s) 198, 410
MspR9I CCNGG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 448
NciI CCSGG 1 cut(s) 410
NcoI CCATGG 2 cut(s) 184, 334
NdeI CATATG 1 cut(s) 446
NdeII GATC 2 cut(s) 102, 414
NlaIII CATG 2 cut(s) 188, 338
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 1 cut(s) 497
NspV TTCGAA 1 cut(s) 83
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 2 cut(s) 143, 223
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Ppu21I YACGTR 2 cut(s) 477, 543
PspFI CCCAGC 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 407
RsaI GTAC 2 cut(s) 8, 541
RsaNI GTAC 2 cut(s) 7, 540
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 2 cut(s) 123, 512
SatI GCNGC 2 cut(s) 142, 222
Sau3AI GATC 2 cut(s) 102, 414
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 410
SetI ASST 9 cut(s) 12, 24, 90, 355, 396, 479, 490, 519, 545
SfaNI GCATC 2 cut(s) 139, 277
SfcI CTRYAG 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 216
SnaBI TACGTA 2 cut(s) 477, 543
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 2 cut(s) 33, 382
SsiI CCGC 3 cut(s) 14, 142, 467
SspMI CTAG 2 cut(s) 350, 378
StyD4I CCNGG 1 cut(s) 408
StyI CCWWGG 2 cut(s) 184, 334
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 479, 545
TaqI TCGA 2 cut(s) 83, 264
TasI AATT 2 cut(s) 33, 382
TauI GCSGC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 123, 512
Tru9I TTAA 2 cut(s) 123, 512
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 3 cut(s) 45, 109, 197
Van91I CCANNNNNTGG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 2 cut(s) 350, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.