Rh7BG065500

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013768
Physical Location & Seq
Reverse (-)
4323881 .. 4324216
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG065500.1

Sequence Viewer

Length: 336 bp
ATGCAATACCTCCCGGCGGAACTAATATCCGGCATCCTCTCCTGGCTTCCGGTAAAGGACTTAATCAGATGCACATCGGTTTCCAAACTGTGGAATAGCATCGTCCGCAGCAAACTGTTCATCAAAGAGCATAACCAACGCGCCATCACTACCAACAATGATTGCACCCTCATATATATTAGTTGTTTTCGTGATCATTTCTCTTCATTGGCATTTTCAGCTTGTTCTGATACGTTCAGCAACGAAGAGCCACTCAAGCATCCAATATATTGCCGAAGATCGAGAGGGATCGACTTAGGCTTGATACTAATGTCATTACTGCCTGCAATGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

111

Amino Acids

12.68

Weight (kDa)

8.33

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 38 1.3e-09 F-box-like
F-box PF00646 4 - 40 1.1e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 17, 106
AclWI GGATC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 16, 90
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 14
BaeI ACNNNNGTAYC 2 cut(s) 296, 329
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 1 cut(s) 14
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 14, 43
BmrFI CCNGG 2 cut(s) 14, 43
BmsI GCATC 4 cut(s) 42, 59, 108, 268
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 90
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 33, 259
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 16, 90
BseMI GCAATG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 141
BsiSI CCGG 3 cut(s) 14, 30, 50
BslI CCNNNNNNNGG 2 cut(s) 16, 90
Bsp143I GATC 3 cut(s) 193, 278, 288
BspACI CCGC 2 cut(s) 17, 106
BspFNI CGCG 1 cut(s) 141
BspPI GGATC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 333
BssMI GATC 3 cut(s) 193, 278, 288
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 90, 117
Bst6I CTCTTC 2 cut(s) 208, 240
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 33, 259
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 3 cut(s) 196, 281, 291
BstMBI GATC 3 cut(s) 193, 278, 288
BstMWI GCNNNNNNNGC 3 cut(s) 105, 218, 256
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 12, 41
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 120
BtsCI GGATG 2 cut(s) 33, 259
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 143
CviJI RGCY 4 cut(s) 46, 221, 250, 300
CviKI_1 RGCY 4 cut(s) 46, 221, 250, 300
DdeI CTNAG 1 cut(s) 295
DpnI GATC 3 cut(s) 195, 280, 290
DpnII GATC 3 cut(s) 193, 278, 288
Eam1104I CTCTTC 2 cut(s) 208, 240
EarI CTCTTC 2 cut(s) 208, 240
EciI GGCGGA 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 41
FaiI YATR 5 cut(s) 132, 173, 175, 177, 268
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 2 cut(s) 20, 246
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 109
HapII CCGG 3 cut(s) 14, 30, 50
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HpaII CCGG 3 cut(s) 14, 30, 50
Hpy188I TCNGA 2 cut(s) 68, 229
Hpy188III TCNNGA 2 cut(s) 191, 282
HpyCH4III ACNGT 2 cut(s) 90, 117
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 4 cut(s) 4, 72, 165, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 218, 256
HpyF3I CTNAG 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 233
HspAI GCGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 3 cut(s) 193, 278, 288
LguI GCTCTTC 1 cut(s) 240
LpnPI CCDG 5 cut(s) 27, 28, 43, 55, 63
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 4 cut(s) 42, 59, 108, 268
MaeII ACGT 1 cut(s) 233
MalI GATC 3 cut(s) 195, 280, 290
MboI GATC 3 cut(s) 193, 278, 288
MboII GAAGA 3 cut(s) 195, 257, 288
MnlI CCTC 4 cut(s) 20, 47, 179, 278
MseI TTAA 1 cut(s) 62
MspI CCGG 3 cut(s) 14, 30, 50
MspR9I CCNGG 2 cut(s) 14, 43
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 105, 218, 256
NciI CCSGG 1 cut(s) 14
NdeII GATC 3 cut(s) 193, 278, 288
PciSI GCTCTTC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 3 cut(s) 193, 278, 288
ScrFI CCNGG 2 cut(s) 14, 43
SetI ASST 3 cut(s) 12, 223, 236
SfaNI GCATC 4 cut(s) 42, 59, 108, 268
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SsiI CCGC 2 cut(s) 17, 106
StyD4I CCNGG 2 cut(s) 12, 41
TaaI ACNGT 2 cut(s) 90, 117
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 281, 291
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 109, 195
Van91I CCANNNNNTGG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.