Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013768

Physical Location & Seq

Genomic Coordinates Forward (+)

11224041 .. 11224517

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG151700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAACAATTCTCGTGTAGCTTGGGTGATGAAAAAGGTCGCATCTGATTATGAGGCAGGTCGTCACTCCATTGTAACTTTTGACCTAGTGAGGAAGGAGTTTCATGGCTTTCCTCTTCCCCGACCATTTAAAAATTTTGTGCGCGGAGAATTGGTGGTGTTGGGAGGCCTGTTATCCATTTGGTATGAAAACTGGGTTTGGATTATGAAGGAAGAATATTCTTGGACTAAGCTTCACTCTTTGCTCTTCAGTTCTGCCCAGCCTCTATTGTTTGATGGTGATCGGGGGAGGGTTCTCTTGAAAGTTGAGCTGAGTAATGGTGGTGCACGGCTTGAGTGGTTCACTTTAAAGACAGGAGAGATGACAAAGATTGATGGGTGCTGTACTCTCCCAGGTTCAGGTGTTCATGTTTGTGAGGGAAACATTCGTCTTCTCTTCGATGGTCATCCTGATGGGAAGCATGGTTACTTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

8.45

Isoelectric Point (pI)

14.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0184221 RchiOBHm_Chr7g0195381
rosa_laevigata	RLG00000004125 RLG00000004126 RLG00000010977 RLG00000030482
rosa_multiflora	Rmu_sc0006707.1_g000026
rosa_rugosa	Rorug07G0022900
rosa_samantha	Rh4AG073300 Rh7AG081800 Rh7AG150200 Rh7BG065500 Rh7BG151700 Rh7CG065800 Rh7CG093400 Rh7CG155300 Rh7CG155400 Rh7DG065500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccII	CGCG	1 cut(s)	144
AciI	CCGC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	232
AfaI	GTAC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	3 cut(s)	20, 232, 310
AluI	AGCT	3 cut(s)	20, 232, 310
Alw21I	GWGCWC	1 cut(s)	328
Alw44I	GTGCAC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	324
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	37, 290
BaeGI	GKGCMC	1 cut(s)	328
BarI	GAAGNNNNNNTAC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	328
BccI	CCATC	4 cut(s)	269, 368, 434, 446
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	393
BfaI	CTAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	393
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	279, 444
BsaJI	CCNNGG	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	197
Bse8I	GATNNNNATC	2 cut(s)	279, 444
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	2 cut(s)	279, 444
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	398
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	47
BspQI	GCTCTTC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	393
Bst6I	CTCTTC	3 cut(s)	120, 251, 440
BstDEI	CTNAG	2 cut(s)	228, 311
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	445
BveI	ACCTGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	3 cut(s)	104, 407, 461
CviJI	RGCY	7 cut(s)	20, 108, 168, 232, 262, 310, 331
CviKI_1	RGCY	7 cut(s)	20, 108, 168, 232, 262, 310, 331
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	2 cut(s)	228, 311
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraI	TTTAAA	2 cut(s)	130, 348
Eam1104I	CTCTTC	3 cut(s)	120, 251, 440
EarI	CTCTTC	3 cut(s)	120, 251, 440
Eco147I	AGGCCT	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	107, 410, 464
FaiI	YATR	6 cut(s)	51, 105, 186, 206, 408, 462
FatI	CATG	3 cut(s)	103, 406, 460
FokI	GGATG	1 cut(s)	432
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	107, 410, 464
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	230
HphI	GGTGA	2 cut(s)	37, 290
Hpy166II	GTNNAC	2 cut(s)	326, 342
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	298, 449
Hpy8I	GTNNAC	2 cut(s)	326, 342
HpyAV	CCTTC	2 cut(s)	88, 202
HpyCH4V	TGCA	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	228, 311
Hsp92II	CATG	3 cut(s)	107, 410, 464
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	280
LguI	GCTCTTC	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	42, 178, 182, 272, 339, 378, 384, 405, 462
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	3 cut(s)	62, 73, 464
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	5 cut(s)	107, 224, 238, 422, 427
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	3 cut(s)	7, 133, 149
MnlI	CCTC	7 cut(s)	46, 84, 123, 158, 273, 282, 409
MseI	TTAA	2 cut(s)	129, 347
MslI	CAYNNNNRTG	2 cut(s)	411, 450
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	144
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	107, 410, 464
NmuCI	GTSAC	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	391
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	2 cut(s)	411, 450
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	129, 347
Sau3AI	GATC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	328
SetI	ASST	8 cut(s)	22, 39, 61, 87, 234, 312, 397, 403
SfaNI	GCATC	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	411, 450
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	7, 133, 149
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	144
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	391
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	7, 133, 149
TatI	WGTACW	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	129, 347
Tru9I	TTAA	2 cut(s)	129, 347
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	6 cut(s)	17, 44, 92, 201, 221, 395
VneI	GTGCAC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	133
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.