Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013768

Physical Location & Seq

Genomic Coordinates Forward (+)

12755544 .. 12755933

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG155300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTAAACCAGGTGGTTCTCATATATAGATCTCAGAACAAAATCCTAGACTCCCACAAGTCTATTCGAGAAACAACCATGTGTTCCACCATCCTGCCAGACCTCCTTAGGGAGCTAATCTACAACAACATCATATGGCTTCCGGTCAAGGATATAATCCTATTCTCCTGCGTTTCTAAAGTATGGAACCACGTCGTCCGCAGCACAGGCTTCATCAAAGAGCATCACGAACACTCTACCATGAATTCCATACATAATTGCACCCTCATACGTTCAACTGATAAGGACGAATTCTACTCAGCGGCCTTCTCCAATGACACGTCGCTGCCGTGGCCTGGAATTCCATTCAATCTGATTCACTGCTGCCGGAAGCAGCACTCGAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

129

Amino Acids

15.08

Weight (kDa)

8.33

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0184221 RchiOBHm_Chr7g0195381
rosa_laevigata	RLG00000004125 RLG00000004126 RLG00000010977 RLG00000030482
rosa_multiflora	Rmu_sc0006707.1_g000026
rosa_rugosa	Rorug07G0022900
rosa_samantha	Rh4AG073300 Rh7AG081800 Rh7AG150200 Rh7BG065500 Rh7BG151700 Rh7CG065800 Rh7CG093400 Rh7CG155300 Rh7CG155400 Rh7DG065500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	199, 302
AcsI	RAATTY	3 cut(s)	244, 290, 339
AfiI	CCNNNNNNNGG	2 cut(s)	109, 335
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	276, 349
AjiI	CACGTC	2 cut(s)	193, 321
AjnI	CCWGG	2 cut(s)	9, 334
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AoxI	GGCC	2 cut(s)	303, 332
ApeKI	GCWGC	4 cut(s)	201, 325, 363, 373
ApoI	RAATTY	3 cut(s)	244, 290, 339
AxyI	CCTNAGG	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	213, 312, 350, 385
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	2 cut(s)	11, 336
BfaI	CTAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	5 cut(s)	202, 303, 326, 364, 374
BlsI	GCNGC	5 cut(s)	203, 304, 327, 365, 375
Bme1390I	CCNGG	2 cut(s)	11, 336
BmgBI	CACGTC	2 cut(s)	193, 321
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	11, 336
BmsI	GCATC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 335
Bse21I	CCTNAGG	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	11, 336
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	109, 335
BseMII	CTCAG	2 cut(s)	47, 312
BseXI	GCAGC	4 cut(s)	213, 312, 350, 385
BshFI	GGCC	2 cut(s)	305, 334
BsiSI	CCGG	2 cut(s)	143, 367
BslI	CCNNNNNNNGG	2 cut(s)	109, 335
BsnI	GGCC	2 cut(s)	305, 334
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	2 cut(s)	199, 302
BspANI	GGCC	2 cut(s)	305, 334
BspCNI	CTCAG	2 cut(s)	46, 311
BspLI	GGNNCC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	11, 336
BstDEI	CTNAG	3 cut(s)	33, 107, 298
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 331
BstNI	CCWGG	2 cut(s)	11, 336
BstSCI	CCNGG	2 cut(s)	9, 334
BstV1I	GCAGC	4 cut(s)	213, 312, 350, 385
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	305, 334
BtgI	CCRYGG	1 cut(s)	329
BtrI	CACGTC	2 cut(s)	193, 321
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	358
CsiI	ACCWGGT	1 cut(s)	9
CviAII	CATG	2 cut(s)	79, 241
CviJI	RGCY	5 cut(s)	115, 139, 210, 305, 334
CviKI_1	RGCY	5 cut(s)	115, 139, 210, 305, 334
DdeI	CTNAG	3 cut(s)	33, 107, 298
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	107
EcoRI	GAATTC	3 cut(s)	244, 290, 339
EcoRII	CCWGG	2 cut(s)	9, 334
FaeI	CATG	2 cut(s)	82, 244
FatI	CATG	2 cut(s)	78, 240
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	5 cut(s)	202, 303, 326, 364, 374
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	5 cut(s)	202, 303, 326, 364, 374
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	5 cut(s)	202, 303, 326, 364, 374
HaeIII	GGCC	2 cut(s)	305, 334
HapII	CCGG	2 cut(s)	143, 367
Hin1II	CATG	2 cut(s)	82, 244
HinfI	GANTC	2 cut(s)	50, 355
HpaII	CCGG	2 cut(s)	143, 367
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	36, 354
Hpy188III	TCNNGA	2 cut(s)	68, 227
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	2 cut(s)	197, 325
HpyAV	CCTTC	1 cut(s)	316
HpyCH4IV	ACGT	3 cut(s)	192, 271, 320
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 331
HpyF3I	CTNAG	3 cut(s)	33, 107, 298
HpySE526I	ACGT	3 cut(s)	192, 271, 320
Hsp92II	CATG	2 cut(s)	82, 244
Kzo9I	GATC	1 cut(s)	29
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	23, 107, 111, 156, 181, 192, 321, 348, 380
Lsp1109I	GCAGC	4 cut(s)	213, 312, 350, 385
LweI	GCATC	1 cut(s)	232
MabI	ACCWGGT	1 cut(s)	9
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	192, 271, 320
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	5 cut(s)	244, 256, 290, 339, 382
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	2 cut(s)	113, 275
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	143, 367
MspR9I	CCNGG	2 cut(s)	11, 336
MvaI	CCWGG	2 cut(s)	11, 336
MwoI	GCNNNNNNNGC	2 cut(s)	207, 331
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	82, 244
NlaIV	GGNNCC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	5 cut(s)	203, 304, 327, 365, 375
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	9, 334
PspGI	CCWGG	2 cut(s)	9, 334
PspN4I	GGNNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	29
SatI	GCNGC	5 cut(s)	202, 303, 326, 364, 374
Sau3AI	GATC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	11, 336
SetI	ASST	6 cut(s)	15, 105, 117, 195, 274, 323
SexAI	ACCWGGT	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	232
Sse9I	AATT	5 cut(s)	244, 256, 290, 339, 382
SsiI	CCGC	2 cut(s)	199, 302
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	9, 334
TaiI	ACGT	3 cut(s)	195, 274, 323
TaqI	TCGA	2 cut(s)	67, 380
TasI	AATT	5 cut(s)	244, 256, 290, 339, 382
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	1 cut(s)	365
TseI	GCWGC	4 cut(s)	201, 325, 363, 373
TspDTI	ATGAA	2 cut(s)	202, 257
TspRI	CASTG	1 cut(s)	365
XapI	RAATTY	3 cut(s)	244, 290, 339
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.