Rh7CG065800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013768
Physical Location & Seq
Reverse (-)
4746948 .. 4747259
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG065800.1

Sequence Viewer

Length: 312 bp
ATGCAATACCTCCCGGCGGAGCTAATATCCGGCATCCTCTCCTGGCTTCCGGTAAAGGACTTAATCAGATGCACATCGGTTTCCAAACTGTGGAATAGCATCGTCCGCAGCAAACTGTTCATCAAAGAGCACAACCAACGCGCCATCACTACCAACAATGATTGCACCCTCATATATATTAGTTGTTTTCGTGATCATTTCTCTTCATTGGCATTTTCAGCTTGTTCTGATACGTTCAGCAGCGAAGAGCCACACAAGCATCCAATATATTCTGCCGAAGAGAGGGATCGACTTGGGCTTGATATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

103

Amino Acids

11.83

Weight (kDa)

6.39

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 2 - 38 1.1e-09 F-box-like
F-box PF00646 4 - 40 9.6e-10 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 90
AccII CGCG 1 cut(s) 141
AciI CCGC 2 cut(s) 17, 106
AclWI GGATC 1 cut(s) 294
AfiI CCNNNNNNNGG 3 cut(s) 16, 90, 282
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 2 cut(s) 22, 221
AluI AGCT 2 cut(s) 22, 221
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 108, 240
AseI ATTAAT 1 cut(s) 306
AspLEI GCGC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 120, 252
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 1 cut(s) 14
BisI GCNGC 2 cut(s) 109, 241
BlsI GCNGC 2 cut(s) 110, 242
Bme1390I CCNGG 2 cut(s) 14, 43
BmrFI CCNGG 2 cut(s) 14, 43
BmsI GCATC 4 cut(s) 42, 59, 108, 268
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 90, 282
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 2 cut(s) 33, 259
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 16, 90, 282
BseXI GCAGC 2 cut(s) 120, 252
Bsh1236I CGCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 3 cut(s) 14, 30, 50
BslI CCNNNNNNNGG 3 cut(s) 16, 90, 282
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 193, 286
BspACI CCGC 2 cut(s) 17, 106
BspFNI CGCG 1 cut(s) 141
BspPI GGATC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 240
BssMI GATC 2 cut(s) 193, 286
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 90, 117
Bst6I CTCTTC 3 cut(s) 208, 240, 273
BstF5I GGATG 2 cut(s) 33, 259
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 196, 289
BstMBI GATC 2 cut(s) 193, 286
BstMWI GCNNNNNNNGC 3 cut(s) 105, 218, 256
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 2 cut(s) 12, 41
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 120, 252
BtsCI GGATG 2 cut(s) 33, 259
CfoI GCGC 1 cut(s) 143
CviJI RGCY 5 cut(s) 22, 46, 221, 250, 298
CviKI_1 RGCY 5 cut(s) 22, 46, 221, 250, 298
DpnI GATC 2 cut(s) 195, 288
DpnII GATC 2 cut(s) 193, 286
Eam1104I CTCTTC 3 cut(s) 208, 240, 273
EarI CTCTTC 3 cut(s) 208, 240, 273
EciI GGCGGA 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 41
FaiI YATR 4 cut(s) 173, 175, 177, 268
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 109, 241
FokI GGATG 2 cut(s) 20, 246
Fsp4HI GCNGC 2 cut(s) 109, 241
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 109, 241
HapII CCGG 3 cut(s) 14, 30, 50
HhaI GCGC 1 cut(s) 143
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HpaII CCGG 3 cut(s) 14, 30, 50
Hpy188I TCNGA 2 cut(s) 68, 229
Hpy188III TCNNGA 1 cut(s) 191
HpyCH4III ACNGT 2 cut(s) 90, 117
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 4, 72, 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 218, 256
HpySE526I ACGT 1 cut(s) 233
HspAI GCGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 193, 286
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 5 cut(s) 27, 28, 43, 55, 63
Lsp1109I GCAGC 2 cut(s) 120, 252
LweI GCATC 4 cut(s) 42, 59, 108, 268
MaeII ACGT 1 cut(s) 233
MalI GATC 2 cut(s) 195, 288
MboI GATC 2 cut(s) 193, 286
MboII GAAGA 3 cut(s) 195, 257, 290
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 307
MnlI CCTC 4 cut(s) 20, 47, 179, 276
MseI TTAA 3 cut(s) 62, 306, 310
MspI CCGG 3 cut(s) 14, 30, 50
MspR9I CCNGG 2 cut(s) 14, 43
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 105, 218, 256
NciI CCSGG 1 cut(s) 14
NdeII GATC 2 cut(s) 193, 286
PacI TTAATTAA 1 cut(s) 310
PciSI GCTCTTC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 90
PkrI GCNGC 2 cut(s) 110, 242
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 62, 306, 310
SatI GCNGC 2 cut(s) 109, 241
Sau3AI GATC 2 cut(s) 193, 286
ScrFI CCNGG 2 cut(s) 14, 43
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 12, 24, 223, 236
SfaNI GCATC 4 cut(s) 42, 59, 108, 268
Sse9I AATT 1 cut(s) 307
SsiI CCGC 2 cut(s) 17, 106
StyD4I CCNGG 2 cut(s) 12, 41
TaaI ACNGT 2 cut(s) 90, 117
TaiI ACGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 289
TasI AATT 1 cut(s) 307
Tru1I TTAA 3 cut(s) 62, 306, 310
Tru9I TTAA 3 cut(s) 62, 306, 310
TseI GCWGC 2 cut(s) 108, 240
TspDTI ATGAA 2 cut(s) 109, 195
Van91I CCANNNNNTGG 1 cut(s) 90
VspI ATTAAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.