RLG00000004126

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013768
Physical Location & Seq
Reverse (-)
56420618 .. 56421497
880 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004126

Sequence Viewer

Length: 795 bp
ATGATTTTCCAGGACCAAAGAATAATTTTCCTTAAAGAAGACTTCAACTGCTACAACGGAGATTCTCACCCAAAGAGTCCAGAGGACTTTCTTTTCAAGGAGAAGTTGAAGGAGGTTGACAATGTCCCACCACCAAAGAAATTTCCCAGATCTTCATCGGCAATTAACTCTGCGGATCAGTTAGCTTCACCGGTGAGTTCCAGCGTCGACGGTTCCACCCACCCACTGAAACGGTTGGACATTGAACTGGGCAGTTCCAAAGCAGTTACCAATTCACGATCTCCAGCAGTTTCTGACTATGTGGTCAAGGACAGTAGCACATGCCCACTTTTCCGTCCTAACCGGGCTTCCTCAGGCCCATCCACTTTGAGCCCAACCTTTGAAAGACCCTTACTCTTTCCTACTTGCCCTGTTGACCTTAATCCAATGGCTCCGGTCGAAGCAGTTGGAGAATCTTATCCTAATATATCACATGTTCCTCTCAAAATAGACAAACTACCTTCTGTTCAAATCTCTTCTGATCCTAATCAGCTTCCAGGGGTGGAAGTTCCAATTAAATTCGGCTCCTTAGCAACGGTTGGAACTACAGGGGTGGGCAATTTAGCAGATCGTGGTCAAACCTCTACTCACCCACTCTCTCATCCTGATTCAGGCCGCAAGAGTAAGAAATCTGTTAGTGGGGATCGGCAACAAACAATGAGGCGTTCCCGACCAGTAACTTCTACTCCTCACTCCACTCCAAAGAAATTCCGTGACGGCAATTCGGTTGGGCGTTCTCTCTCAACCCGACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

28.63

Weight (kDa)

9.46

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 207
AciI CCGC 2 cut(s) 173, 655
AclWI GGATC 3 cut(s) 183, 515, 690
AcsI RAATTY 3 cut(s) 140, 557, 746
AfiI CCNNNNNNNGG 1 cut(s) 650
AflIII ACRYGT 1 cut(s) 472
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 6 cut(s) 46, 97, 109, 245, 383, 509
AjnI CCWGG 2 cut(s) 9, 535
AluBI AGCT 2 cut(s) 185, 532
AluI AGCT 2 cut(s) 185, 532
AlwI GGATC 3 cut(s) 183, 515, 690
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 2 cut(s) 355, 652
ApoI RAATTY 3 cut(s) 140, 557, 746
AsiGI ACCGGT 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 13, 356
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 59, 180, 205, 620
AvaII GGWCC 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 352
BanII GRGCYC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 45
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 772
BciT130I CCWGG 2 cut(s) 11, 537
BcnI CCSGG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 585
BglII AGATCT 1 cut(s) 149
BisI GCNGC 1 cut(s) 655
BlsI GCNGC 1 cut(s) 656
Bme1390I CCNGG 3 cut(s) 11, 344, 537
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 13, 356
BmiI GGNNCC 3 cut(s) 214, 432, 565
BmrFI CCNGG 3 cut(s) 11, 344, 537
BmrI ACTGGG 1 cut(s) 257
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 568
BpuMI CCSGG 1 cut(s) 344
BsaBI GATNNNNATC 2 cut(s) 154, 525
BsaJI CCNNGG 1 cut(s) 536
BsaWI WCCGGW 2 cut(s) 190, 433
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 252, 713
Bse21I CCTNAGG 1 cut(s) 352
Bse8I GATNNNNATC 2 cut(s) 154, 525
BseBI CCWGG 2 cut(s) 11, 537
BseDI CCNNGG 1 cut(s) 536
BseGI GGATG 2 cut(s) 359, 640
BseJI GATNNNNATC 2 cut(s) 154, 525
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 252, 713
BseRI GAGGAG 1 cut(s) 717
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 2 cut(s) 357, 654
BshTI ACCGGT 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 3 cut(s) 191, 343, 434
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 2 cut(s) 357, 654
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 6 cut(s) 149, 175, 278, 520, 607, 682
BspACI CCGC 2 cut(s) 173, 655
BspANI GGCC 2 cut(s) 357, 654
BspCNI CTCAG 1 cut(s) 365
BspLI GGNNCC 3 cut(s) 214, 432, 565
BspPI GGATC 3 cut(s) 183, 515, 690
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 2 cut(s) 252, 713
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 536
BssMI GATC 6 cut(s) 149, 175, 278, 520, 607, 682
Bst2UI CCWGG 2 cut(s) 11, 537
Bst4CI ACNGT 4 cut(s) 212, 234, 314, 577
Bst6I CTCTTC 1 cut(s) 520
BstDEI CTNAG 2 cut(s) 352, 568
BstENI CCTNNNNNAGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 359, 640
BstKTI GATC 6 cut(s) 152, 178, 281, 523, 610, 685
BstMBI GATC 6 cut(s) 149, 175, 278, 520, 607, 682
BstMCI CGRYCG 1 cut(s) 438
BstNI CCWGG 2 cut(s) 11, 537
BstNSI RCATGY 2 cut(s) 324, 476
BstSCI CCNGG 3 cut(s) 9, 342, 535
BstSFI CTRYAG 1 cut(s) 585
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Bsu36I CCTNAGG 1 cut(s) 352
BsuRI GGCC 2 cut(s) 357, 654
BtsCI GGATG 2 cut(s) 359, 640
BtsIMutI CAGTG 1 cut(s) 224
CaiI CAGNNNCTG 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 13, 356
CseI GACGC 1 cut(s) 193
CspAI ACCGGT 1 cut(s) 190
CviAII CATG 2 cut(s) 321, 473
CviJI RGCY 8 cut(s) 185, 347, 357, 372, 431, 532, 564, 654
CviKI_1 RGCY 8 cut(s) 185, 347, 357, 372, 431, 532, 564, 654
DdeI CTNAG 2 cut(s) 352, 568
DpnI GATC 6 cut(s) 151, 177, 280, 522, 609, 684
DpnII GATC 6 cut(s) 149, 175, 278, 520, 607, 682
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoRII CCWGG 2 cut(s) 9, 535
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 2 cut(s) 324, 476
FaiI YATR 4 cut(s) 300, 322, 467, 474
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 320, 472
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 655
FokI GGATG 2 cut(s) 346, 627
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 655
GluI GCNGC 1 cut(s) 655
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 2 cut(s) 357, 654
HapII CCGG 3 cut(s) 191, 343, 434
HgaI GACGC 1 cut(s) 193
Hin1II CATG 2 cut(s) 324, 476
HincII GTYRAC 3 cut(s) 118, 208, 415
HindII GTYRAC 3 cut(s) 118, 208, 415
HinfI GANTC 4 cut(s) 62, 76, 452, 647
HpaII CCGG 3 cut(s) 191, 343, 434
HphI GGTGA 4 cut(s) 59, 180, 205, 620
Hpy166II GTNNAC 3 cut(s) 118, 208, 415
Hpy188I TCNGA 2 cut(s) 295, 520
Hpy188III TCNNGA 4 cut(s) 80, 276, 644, 708
Hpy8I GTNNAC 3 cut(s) 118, 208, 415
Hpy99I CGWCG 2 cut(s) 209, 212
HpyAV CCTTC 2 cut(s) 103, 510
HpyCH4III ACNGT 4 cut(s) 212, 234, 314, 577
HpyF3I CTNAG 2 cut(s) 352, 568
Hsp92II CATG 2 cut(s) 324, 476
Kzo9I GATC 6 cut(s) 149, 175, 278, 520, 607, 682
LmnI GCTCC 2 cut(s) 436, 569
MaeIII GTNAC 3 cut(s) 265, 715, 752
MalI GATC 6 cut(s) 151, 177, 280, 522, 609, 684
MboI GATC 6 cut(s) 149, 175, 278, 520, 607, 682
MboII GAAGA 3 cut(s) 50, 144, 507
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 9 cut(s) 24, 140, 162, 271, 552, 557, 598, 746, 760
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 3 cut(s) 216, 427, 559
MnlI CCTC 7 cut(s) 76, 106, 361, 489, 631, 693, 738
MseI TTAA 4 cut(s) 33, 165, 420, 555
MspI CCGG 3 cut(s) 191, 343, 434
MspR9I CCNGG 3 cut(s) 11, 344, 537
MvaI CCWGG 2 cut(s) 11, 537
NciI CCSGG 1 cut(s) 344
NdeII GATC 6 cut(s) 149, 175, 278, 520, 607, 682
NlaIII CATG 2 cut(s) 324, 476
NlaIV GGNNCC 3 cut(s) 214, 432, 565
NmuCI GTSAC 1 cut(s) 752
NspI RCATGY 2 cut(s) 324, 476
PciI ACATGT 1 cut(s) 472
PfeI GAWTC 3 cut(s) 62, 452, 647
PflFI GACNNNGTC 1 cut(s) 122
PfoI TCCNGGA 1 cut(s) 9
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 1 cut(s) 656
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PscI ACATGT 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 9, 535
PspGI CCWGG 2 cut(s) 9, 535
PspN4I GGNNCC 3 cut(s) 214, 432, 565
PspPI GGNCC 2 cut(s) 13, 356
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 1 cut(s) 149
PsyI GACNNNGTC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 4 cut(s) 33, 165, 420, 555
SatI GCNGC 1 cut(s) 655
Sau3AI GATC 6 cut(s) 149, 175, 278, 520, 607, 682
Sau96I GGNCC 2 cut(s) 13, 356
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 3 cut(s) 11, 344, 537
SduI GDGCHC 1 cut(s) 374
SetI ASST 7 cut(s) 117, 187, 380, 420, 502, 534, 623
SfcI CTRYAG 1 cut(s) 585
SgrAI CRCCGGYG 1 cut(s) 190
SgrDI CGTCGACG 1 cut(s) 206
SinI GGWCC 1 cut(s) 13
Sse9I AATT 9 cut(s) 24, 140, 162, 271, 552, 557, 598, 746, 760
SsiI CCGC 2 cut(s) 173, 655
StyD4I CCNGG 3 cut(s) 9, 342, 535
TaaI ACNGT 4 cut(s) 212, 234, 314, 577
TaqI TCGA 2 cut(s) 207, 438
TasI AATT 9 cut(s) 24, 140, 162, 271, 552, 557, 598, 746, 760
TauI GCSGC 1 cut(s) 657
TfiI GAWTC 3 cut(s) 62, 452, 647
Tru1I TTAA 4 cut(s) 33, 165, 420, 555
Tru9I TTAA 4 cut(s) 33, 165, 420, 555
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 752
Tsp45I GTSAC 1 cut(s) 752
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 3 cut(s) 72, 323, 740
TspRI CASTG 1 cut(s) 231
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 13
XagI CCTNNNNNAGG 1 cut(s) 648
XapI RAATTY 3 cut(s) 140, 557, 746
XceI RCATGY 2 cut(s) 324, 476
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.