Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013768

Physical Location & Seq

Genomic Coordinates Reverse (-)

56418897 .. 56420477

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCATTGCATTGTTCTTGCTTTGAAGTTGGTAGGGATGACAATGGGGGTGGTGGTTTATTACTGTTTTGGCAGACCAATTGGCAGTTTCATGTTATCAACTCCTCTGAGGGACACATTGATGGGGTGGCGGTGTCTCCTGACAATGTTTCAGTATCGTATTACAGGGTTTTATGGGAATCCAACAACACAGCTTCGCTCTAAATCGTGGATTTGCTTCTGCGTATCTGCTCCAGAGTATTTGATAATGCAGGGTGAGGTGGTTAGGCCACCGGAGGTTGCCTCTTCACAACTTCTGCATGCTTGTCGTCCATCACCTCACTCCGTACTTGATATCCAACAAAACCGTCCCACAAGTCCATTCGAGAAACAACCATGTGTTCCAGTCACTTCCACCATCCTGCCAGACCTCCCTAGGGAGCTAATCTACAACATCATCATACGGCTTCCGGTCAAGGATATAATCCGATTCTCCTGCGTTTCTAAAGTATGGAACCACGTCGTCCGCAGCAGAGGCTTCATCAAAGAGCATCACGAACACTCTACCATGAATTCCATACATAATTGCACCCTCATACGTTTAACTAATAAGGACGAATTATACTCAGCGGCCTTCTCCAATGACACGTTCGGCCAACAAAAGCAAATCAAGCCTCATCCATTACATTCCGTTAAAGAAAGGAATAGACTTGGTCTTAGATCTCGTGTGGTTGCCAAGTACAATGGACTGATCTTACTTCAAGTTCAAGTTCTCCTCCGGAAGAAGTACTACCTTGTTCTATGGAATCCGACGATTGCCAAGCATAGAAGGATCCCCTATGAGTTCGAGAAACATAAACGATACCATAGGGTTTTCGGAGTAGGGTATGATTCTGATGCAGACGACTTGAAGGTCTTTACTCTTGAGCAACGTTGTAATAATTTTGCGCAAAACTGTCCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

315

Amino Acids

36.4

Weight (kDa)

9.63

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	134 - 174	4.6e-10	F-box domain
F-box-like	PF12937	135 - 170	6.5e-06	F-box-like
FBA_1	PF07734	199 - 305	6.6e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013768)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0184221 RchiOBHm_Chr7g0195381
rosa_laevigata	RLG00000004125 RLG00000004126 RLG00000010977 RLG00000030482
rosa_multiflora	Rmu_sc0006707.1_g000026
rosa_rugosa	Rorug07G0022900
rosa_samantha	Rh4AG073300 Rh7AG081800 Rh7AG150200 Rh7BG065500 Rh7BG151700 Rh7CG065800 Rh7CG093400 Rh7CG155300 Rh7CG155400 Rh7DG065500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	890
Acc16I	TGCGCA	1 cut(s)	927
AccIII	TCCGGA	1 cut(s)	756
AciI	CCGC	3 cut(s)	130, 505, 608
AclI	AACGTT	1 cut(s)	910
AclWI	GGATC	2 cut(s)	805, 818
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	3 cut(s)	327, 719, 767
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	4 cut(s)	25, 740, 746, 889
AjiI	CACGTC	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	2 cut(s)	193, 421
AluI	AGCT	2 cut(s)	193, 421
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	805, 818
Aor13HI	TCCGGA	1 cut(s)	756
AoxI	GGCC	3 cut(s)	266, 609, 631
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	1 cut(s)	550
AspA2I	CCTAGG	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	928
AsuHPI	GGTGA	2 cut(s)	266, 306
AvrII	CCTAGG	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	810
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BauI	CACGAG	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	3 cut(s)	115, 319, 404
BceAI	ACGGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	4 cut(s)	287, 321, 456, 490
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	414
BglII	AGATCT	1 cut(s)	698
BisI	GCNGC	2 cut(s)	508, 609
BlnI	CCTAGG	1 cut(s)	413
BlsI	GCNGC	2 cut(s)	509, 610
BmcAI	AGTACT	1 cut(s)	767
BmgBI	CACGTC	1 cut(s)	499
BmiI	GGNNCC	2 cut(s)	494, 812
BmsI	GCATC	2 cut(s)	538, 865
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	923
BsaJI	CCNNGG	1 cut(s)	413
BsaWI	WCCGGW	3 cut(s)	271, 448, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	4
BseAI	TCCGGA	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	3 cut(s)	42, 396, 655
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	2 cut(s)	98, 618
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	2 cut(s)	93, 743
BseXI	GCAGC	1 cut(s)	519
BshFI	GGCC	3 cut(s)	268, 611, 633
BsiSI	CCGG	3 cut(s)	272, 449, 757
BslFI	GGGAC	2 cut(s)	125, 333
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	125, 333
BsnI	GGCC	3 cut(s)	268, 611, 633
Bsp13I	TCCGGA	1 cut(s)	756
Bsp143I	GATC	3 cut(s)	698, 729, 810
BspACI	CCGC	3 cut(s)	130, 505, 608
BspANI	GGCC	3 cut(s)	268, 611, 633
BspCNI	CTCAG	2 cut(s)	99, 617
BspEI	TCCGGA	1 cut(s)	756
BspLI	GGNNCC	2 cut(s)	494, 812
BspPI	GGATC	2 cut(s)	805, 818
BsrDI	GCAATG	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	3 cut(s)	698, 729, 810
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	413
Bst2BI	CACGAG	1 cut(s)	702
Bst4CI	ACNGT	3 cut(s)	65, 347, 935
Bst6I	CTCTTC	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	107, 604, 695
BstF5I	GGATG	3 cut(s)	42, 396, 655
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	3 cut(s)	701, 732, 813
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	698, 729, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 649
BstNSI	RCATGY	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	698, 810
BstYI	RGATCY	2 cut(s)	698, 810
BsuRI	GGCC	3 cut(s)	268, 611, 633
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	3 cut(s)	42, 396, 655
Cac8I	GCNNGC	1 cut(s)	300
CfoI	GCGC	1 cut(s)	928
Csp6I	GTAC	3 cut(s)	326, 718, 766
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	4 cut(s)	91, 299, 375, 547
CviJI	RGCY	8 cut(s)	193, 268, 421, 445, 516, 611, 633, 652
CviKI_1	RGCY	8 cut(s)	193, 268, 421, 445, 516, 611, 633, 652
CviQI	GTAC	3 cut(s)	326, 718, 766
DdeI	CTNAG	3 cut(s)	107, 604, 695
DpnI	GATC	3 cut(s)	700, 731, 812
DpnII	GATC	3 cut(s)	698, 729, 810
DrdI	GACNNNNNNGTC	1 cut(s)	890
DseDI	GACNNNNNNGTC	1 cut(s)	890
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	550
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	413
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	94, 302, 378, 550
FaqI	GGGAC	2 cut(s)	125, 333
FatI	CATG	4 cut(s)	90, 298, 374, 546
Fnu4HI	GCNGC	2 cut(s)	508, 609
FokI	GGATG	3 cut(s)	49, 383, 642
Fsp4HI	GCNGC	2 cut(s)	508, 609
FspBI	CTAG	1 cut(s)	414
FspI	TGCGCA	1 cut(s)	927
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	2 cut(s)	508, 609
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	268, 611, 633
HapII	CCGG	3 cut(s)	272, 449, 757
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	4 cut(s)	94, 302, 378, 550
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HinfI	GANTC	4 cut(s)	178, 468, 784, 869
HpaII	CCGG	3 cut(s)	272, 449, 757
HphI	GGTGA	2 cut(s)	266, 306
Hpy188I	TCNGA	6 cut(s)	108, 467, 789, 857, 874, 939
Hpy188III	TCNNGA	7 cut(s)	139, 233, 364, 533, 757, 826, 902
Hpy99I	CGWCG	2 cut(s)	503, 793
HpyAV	CCTTC	3 cut(s)	622, 801, 883
HpyCH4III	ACNGT	3 cut(s)	65, 347, 935
HpyCH4IV	ACGT	4 cut(s)	498, 577, 626, 910
HpyCH4V	TGCA	6 cut(s)	4, 9, 250, 298, 567, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 649
HpyF3I	CTNAG	3 cut(s)	107, 604, 695
HpySE526I	ACGT	4 cut(s)	498, 577, 626, 910
Hsp92II	CATG	4 cut(s)	94, 302, 378, 550
HspAI	GCGC	1 cut(s)	926
Kpn2I	TCCGGA	1 cut(s)	756
Kzo9I	GATC	3 cut(s)	698, 729, 810
LmnI	GCTCC	2 cut(s)	235, 418
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	2 cut(s)	538, 865
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	4 cut(s)	498, 577, 626, 910
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	700, 731, 812
MboI	GATC	3 cut(s)	698, 729, 810
MboII	GAAGA	2 cut(s)	276, 772
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	2 cut(s)	698, 810
MluCI	AATT	5 cut(s)	78, 550, 562, 596, 919
MmeI	TCCRAC	3 cut(s)	206, 361, 812
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	756
MseI	TTAA	2 cut(s)	581, 672
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	3 cut(s)	272, 449, 757
MunI	CAATTG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	513, 649
NdeII	GATC	3 cut(s)	698, 729, 810
NlaIII	CATG	4 cut(s)	94, 302, 378, 550
NlaIV	GGNNCC	2 cut(s)	494, 812
NmuCI	GTSAC	1 cut(s)	385
NsbI	TGCGCA	1 cut(s)	927
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	178, 468, 784, 869
PflFI	GACNNNGTC	1 cut(s)	690
PkrI	GCNGC	2 cut(s)	509, 610
Psp1406I	AACGTT	1 cut(s)	910
PspN4I	GGNNCC	2 cut(s)	494, 812
PsuI	RGATCY	2 cut(s)	698, 810
PsyI	GACNNNGTC	1 cut(s)	690
RsaI	GTAC	3 cut(s)	327, 719, 767
RsaNI	GTAC	3 cut(s)	326, 718, 766
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	581, 672
SatI	GCNGC	2 cut(s)	508, 609
Sau3AI	GATC	3 cut(s)	698, 729, 810
ScaI	AGTACT	1 cut(s)	767
SfaNI	GCATC	2 cut(s)	538, 865
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	5 cut(s)	78, 550, 562, 596, 919
SsiI	CCGC	3 cut(s)	130, 505, 608
SspMI	CTAG	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	3 cut(s)	65, 347, 935
TaiI	ACGT	4 cut(s)	501, 580, 629, 913
TaqI	TCGA	2 cut(s)	363, 825
TasI	AATT	5 cut(s)	78, 550, 562, 596, 919
TatI	WGTACW	2 cut(s)	717, 765
TauI	GCSGC	1 cut(s)	611
TfiI	GAWTC	4 cut(s)	178, 468, 784, 869
Tru1I	TTAA	2 cut(s)	581, 672
Tru9I	TTAA	2 cut(s)	581, 672
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	3 cut(s)	79, 508, 563
TspGWI	ACGGA	2 cut(s)	313, 658
Tth111I	GACNNNGTC	1 cut(s)	690
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	302
XmaJI	CCTAGG	1 cut(s)	413
XspI	CTAG	1 cut(s)	414
ZrmI	AGTACT	1 cut(s)	767
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.