Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011095

Physical Location & Seq

Genomic Coordinates Reverse (-)

6269680 .. 6271391

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGGCAGAAAGGTGGAATGCCGAATAAGAGCATGAAGAGCGAAGAGGAGGAGGAGATGAAGGACCTTAAGGCATTGCTGAGTGAGAAGACTTGTAGGGAGTTGCACAAGTCGAAAACGGGGGACCTCCTTTACGGAATTTTCTTAGGTATCCGATTCAAAACTAAAAGTGGTTCGCAATTGAAGGAATACTGCTCATCCCTAACAAAAGAGGACTGCCGACGAGACTGTTCTTTTCTTGATACCTGCCGTCACATGAAGCTCGATTCAACACCAGATGTGTCAAACATGATGGCTCCCCCTAAACCAGTAAAGCAGCGTGCTGAATATTGTTCTGAGGTAGAACTTGGTCAACCACAATGGATTAACCGTGATATCCACAATTTTAGAATGGATATTTTGGGACAGTTCGGAGTCATAATGGCTGATCCGCCATGGGACATTCATATGGAATTGCCTTATGGGAACTATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

158

Amino Acids

18.17

Weight (kDa)

6.43

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10760
fragaria_vesca	FvH4_5g11050 FvH4_5g11050
malus_domestica	MD06G1116900.v1.1 MD14G1124400.v1.1
prunus_persica	Prupe.5G128200_v2.0.a1
pyrus_communis	pycom06g10900
rosa_chinensis	RchiOBHm_Chr7g0186271 RchiOBHm_Chr7g0186751
rosa_laevigata	RLG00000004819
rosa_multiflora	Rmu_sc0009734.1_g000004
rosa_roxburghii	Rroxscaffold_3G00267860
rosa_rugosa	Rorug06G0473000 Rorug06G0476300
rosa_samantha	Rh7AG064200 Rh7BG080700 Rh7CG083300 Rh7DG084200
rosa_wichuraiana	Rw7G006690 Rw7G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	1 cut(s)	138
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	160, 184, 270
AluBI	AGCT	2 cut(s)	262, 474
AluI	AGCT	2 cut(s)	262, 474
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	64, 124
AvaII	GGWCC	2 cut(s)	64, 124
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme18I	GGWCC	2 cut(s)	64, 124
BmgT120I	GGNCC	2 cut(s)	64, 124
BmiI	GGNNCC	2 cut(s)	125, 297
BpiI	GAAGAC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	71, 327
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	3 cut(s)	62, 65, 68
BseXI	GCAGC	1 cut(s)	328
BslFI	GGGAC	3 cut(s)	137, 417, 452
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	3 cut(s)	137, 417, 452
BsmI	GAATGC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	427
Bsp19I	CCATGG	1 cut(s)	434
BspACI	CCGC	1 cut(s)	431
BspCNI	CTCAG	2 cut(s)	72, 328
BspLI	GGNNCC	2 cut(s)	125, 297
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	1 cut(s)	427
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	3 cut(s)	230, 371, 408
Bst6I	CTCTTC	2 cut(s)	32, 39
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	80, 145, 336
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	197
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	95
BsuI	GTATCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	64, 124
CviAII	CATG	4 cut(s)	34, 256, 289, 435
CviJI	RGCY	4 cut(s)	262, 296, 425, 474
CviKI_1	RGCY	4 cut(s)	262, 296, 425, 474
DdeI	CTNAG	3 cut(s)	80, 145, 336
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	32, 39
EarI	CTCTTC	2 cut(s)	32, 39
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	64, 124
EcoO109I	RGGNCCY	2 cut(s)	64, 124
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	37, 259, 292, 438
FaiI	YATR	9 cut(s)	35, 257, 290, 419, 436, 447, 449, 462, 471
FaqI	GGGAC	3 cut(s)	137, 417, 452
FatI	CATG	4 cut(s)	33, 255, 288, 434
FauNDI	CATATG	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	37, 259, 292, 438
HincII	GTYRAC	1 cut(s)	353
HindII	GTYRAC	1 cut(s)	353
HinfI	GANTC	3 cut(s)	156, 266, 414
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	3 cut(s)	155, 337, 413
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	55, 178
HpyCH4III	ACNGT	3 cut(s)	230, 371, 408
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	3 cut(s)	80, 145, 336
Hsp92II	CATG	4 cut(s)	37, 259, 292, 438
Kzo9I	GATC	1 cut(s)	427
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	3 cut(s)	259, 288, 321
Lsp1109I	GCAGC	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	3 cut(s)	49, 56, 100
MfeI	CAATTG	1 cut(s)	179
MluCI	AATT	4 cut(s)	138, 179, 382, 452
MlyI	GAGTC	1 cut(s)	423
MnlI	CCTC	6 cut(s)	40, 43, 46, 137, 205, 331
MseI	TTAA	2 cut(s)	69, 366
MslI	CAYNNNNRTG	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	434
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	37, 259, 292, 438
NlaIV	GGNNCC	2 cut(s)	125, 297
NmuCI	GTSAC	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	156, 266
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PpuMI	RGGWCCY	2 cut(s)	64, 124
Psp5II	RGGWCCY	2 cut(s)	64, 124
PspN4I	GGNNCC	2 cut(s)	125, 297
PspPI	GGNCC	2 cut(s)	64, 124
PspPPI	RGGWCCY	2 cut(s)	64, 124
RseI	CAYNNNNRTG	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	69, 366
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	2 cut(s)	64, 124
SchI	GAGTC	1 cut(s)	423
SetI	ASST	8 cut(s)	16, 69, 129, 151, 248, 264, 342, 476
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	2 cut(s)	64, 124
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	4 cut(s)	138, 179, 382, 452
SsiI	CCGC	1 cut(s)	431
SspI	AATATT	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	230, 371, 408
TaqI	TCGA	2 cut(s)	113, 264
TasI	AATT	4 cut(s)	138, 179, 382, 452
TfiI	GAWTC	2 cut(s)	156, 266
Tru1I	TTAA	2 cut(s)	69, 366
Tru9I	TTAA	2 cut(s)	69, 366
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	50, 74, 272, 434
TspGWI	ACGGA	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	64, 124
XapI	RAATTY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.