Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011095

Physical Location & Seq

Genomic Coordinates Reverse (-)

5723883 .. 5727024

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGGCAGAAAGGTGGAATGCCGAATAAGAGCATGAAGAGCGAAGAGGAGGAGGAGATGAAGGACCTTAAGGCATTGCTGAGTGAGAAGACTTGTAAGGAGTTGCACAAGTCGAAAACTGGGGACCTCCTTTACGGAATTTTCTTAGGTATCCGATTCAAAACTAAAAGTGGTTCGCAATTGAAGGAATACTGCTCATCCCTAACAAAAGAGGACTGCCGACGTCAATCTAATTCCCTCGATTCAACACCAGATGTGTCAAACATGATGGCTCCCCCTAAACCAGTAAAGCAGCGTGCTGAATATTGTTCTGAGGTAGAACTTGGTCAACCACAATGGACTAACCGTGATATCCACAATTTTAGAATGGATATTTTGGGACAGTTCGGAGTCATAATGGCTGATCCGCCATGGGACATTCATATGGAATTGCCTTATGGGACTATGGCTGATGATGAAATGTGCGCTGTTAATGTTCCGGCATTGCAGACTGATGATCTGATTTTTCTTTGGGTCACTGGATGTGTGATGGAGCTTGGACGTGAATGTTTAAAACTTTGGGTATACAAGCGTATTGAGGAGATGATTTGGGTGAAAACTAATCAACTTCAACGAATAATTAGAACTGGCAAGGAGCATTGCCTCGTTGGAATAAAAGGGGATCCATTGGTAAATAGGAATATTGATGCTGATGTCATTGTTGCTGTGGTCAGAGAGACAGACCGTAAGCCAGGCGAGGTTAGATTAGTCCCAAGGACAAGGAAGCTGGAACTGTTTGCACGCATGCACAACACTCATGCAGGGAGGATGTCACTCGGTAATCAACTGAGTGGTGTACGATTGGTTGATGAACGCTTGCGTGCACGGTTCAAGGCTGCTTACCCAGAGATGGAGGTGCAGCCAGCTTCCCCACCCAGAGCTTCTGCCATGGAAGTGGATTCAAATGCTGCCCAAACAAGAAGTCCAGTTTCCGAAGCAAAGCCCACAGCTGTGCAACTAGCAGAGGCTGCTGCTCCACAACAAGCAGAGCCTGCCGTTCCAGATGCACCTGCTTCTGAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

354

Amino Acids

39.65

Weight (kDa)

6.36

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	129 - 275	3e-39	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10760
fragaria_vesca	FvH4_5g11050 FvH4_5g11050
malus_domestica	MD06G1116900.v1.1 MD14G1124400.v1.1
prunus_persica	Prupe.5G128200_v2.0.a1
pyrus_communis	pycom06g10900
rosa_chinensis	RchiOBHm_Chr7g0186271 RchiOBHm_Chr7g0186751
rosa_laevigata	RLG00000004819
rosa_multiflora	Rmu_sc0009734.1_g000004
rosa_roxburghii	Rroxscaffold_3G00267860
rosa_rugosa	Rorug06G0473000 Rorug06G0476300
rosa_samantha	Rh7AG064200 Rh7BG080700 Rh7CG083300 Rh7DG084200
rosa_wichuraiana	Rw7G006690 Rw7G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1057
AatII	GACGTC	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	1057
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	3 cut(s)	398, 656, 669
AcsI	RAATTY	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	223
AfaI	GTAC	1 cut(s)	837
AfiI	CCNNNNNNNGG	1 cut(s)	889
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	6 cut(s)	160, 184, 246, 611, 871, 942
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	730
AleI	CACNNNNGTG	1 cut(s)	989
AluBI	AGCT	5 cut(s)	535, 766, 905, 920, 989
AluI	AGCT	5 cut(s)	535, 766, 905, 920, 989
Alw21I	GWGCWC	1 cut(s)	865
Alw26I	GTCTC	1 cut(s)	710
Alw44I	GTGCAC	1 cut(s)	861
AlwI	GGATC	3 cut(s)	398, 656, 669
AlwNI	CAGNNNCTG	2 cut(s)	1007, 1031
ApaLI	GTGCAC	1 cut(s)	861
ApeKI	GCWGC	6 cut(s)	292, 875, 898, 947, 1007, 1010
ApoI	RAATTY	1 cut(s)	138
ArsI	GACNNNNNNTTYG	2 cut(s)	946, 978
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	64, 124
AsuHPI	GGTGA	1 cut(s)	604
AvaII	GGWCC	2 cut(s)	64, 124
BaeGI	GKGCMC	1 cut(s)	865
BamHI	GGATCC	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	865
BbvI	GCAGC	6 cut(s)	304, 862, 910, 934, 994, 997
BccI	CCATC	3 cut(s)	262, 523, 883
BceAI	ACGGC	1 cut(s)	1019
BciT130I	CCWGG	1 cut(s)	732
BciVI	GTATCC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	1 cut(s)	998
BfrI	CTTAAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	1057
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	6 cut(s)	293, 876, 899, 948, 1008, 1011
BlsI	GCNGC	6 cut(s)	294, 877, 900, 949, 1009, 1012
Bme1390I	CCNGG	1 cut(s)	732
Bme18I	GGWCC	2 cut(s)	64, 124
BmgBI	CACGTC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	64, 124
BmiI	GGNNCC	3 cut(s)	125, 273, 663
BmrFI	CCNGG	1 cut(s)	732
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	676, 1033
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	410, 752, 927
Bsc4I	CCNNNNNNNGG	1 cut(s)	889
Bse1I	ACTGG	5 cut(s)	124, 284, 523, 631, 965
Bse3DI	GCAATG	3 cut(s)	74, 482, 637
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	410, 752, 927
BseGI	GGATG	3 cut(s)	197, 527, 813
BseLI	CCNNNNNNNGG	1 cut(s)	889
BseMI	GCAATG	3 cut(s)	74, 482, 637
BseMII	CTCAG	4 cut(s)	71, 303, 818, 1047
BseNI	ACTGG	5 cut(s)	124, 284, 523, 631, 965
BseRI	GAGGAG	4 cut(s)	62, 65, 68, 593
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	6 cut(s)	304, 862, 910, 934, 994, 997
BsgI	GTGCAG	1 cut(s)	917
BsiHKAI	GWGCWC	1 cut(s)	865
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	5 cut(s)	137, 393, 428, 454, 734
BslI	CCNNNNNNNGG	1 cut(s)	889
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	5 cut(s)	137, 393, 428, 454, 734
BsmI	GAATGC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	3 cut(s)	403, 496, 661
Bsp19I	CCATGG	2 cut(s)	410, 927
BspACI	CCGC	1 cut(s)	407
BspCNI	CTCAG	4 cut(s)	72, 304, 819, 1048
BspLI	GGNNCC	3 cut(s)	125, 273, 663
BspMI	ACCTGC	1 cut(s)	1057
BspPI	GGATC	3 cut(s)	398, 656, 669
BspQI	GCTCTTC	1 cut(s)	32
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	3 cut(s)	74, 482, 637
BsrI	ACTGG	5 cut(s)	124, 284, 523, 631, 965
BssECI	CCNNGG	3 cut(s)	410, 752, 927
BssMI	GATC	3 cut(s)	403, 496, 661
BssNAI	GTATAC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	223
BssT1I	CCWWGG	3 cut(s)	410, 752, 927
Bst1107I	GTATAC	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	5 cut(s)	347, 384, 725, 774, 867
Bst6I	CTCTTC	2 cut(s)	32, 39
BstACI	GRCGYC	1 cut(s)	223
BstAFI	CTTAAG	1 cut(s)	68
BstAPI	GCANNNNNTGC	2 cut(s)	1007, 1031
BstC8I	GCNNGC	7 cut(s)	297, 781, 785, 857, 861, 903, 1032
BstDEI	CTNAG	5 cut(s)	80, 145, 312, 827, 1056
BstDSI	CCRYGG	2 cut(s)	410, 927
BstF5I	GGATG	3 cut(s)	197, 527, 813
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	3 cut(s)	406, 499, 664
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	3 cut(s)	403, 496, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 1007, 1031
BstNI	CCWGG	1 cut(s)	732
BstNSI	RCATGY	1 cut(s)	787
BstSCI	CCNGG	1 cut(s)	730
BstSLI	GKGCMC	1 cut(s)	865
BstV1I	GCAGC	6 cut(s)	304, 862, 910, 934, 994, 997
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	661
BstZ17I	GTATAC	1 cut(s)	565
BsuI	GTATCC	1 cut(s)	161
BtgI	CCRYGG	2 cut(s)	410, 927
BtrI	CACGTC	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	197, 527, 813
BtsIMutI	CAGTG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	1057
Cac8I	GCNNGC	7 cut(s)	297, 781, 785, 857, 861, 903, 1032
CaiI	CAGNNNCTG	2 cut(s)	1007, 1031
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	64, 124
Csp6I	GTAC	1 cut(s)	836
CviAII	CATG	6 cut(s)	34, 265, 411, 784, 797, 928
CviQI	GTAC	1 cut(s)	836
DdeI	CTNAG	5 cut(s)	80, 145, 312, 827, 1056
DpnI	GATC	3 cut(s)	405, 498, 663
DpnII	GATC	3 cut(s)	403, 496, 661
DraI	TTTAAA	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	32, 39
EarI	CTCTTC	2 cut(s)	32, 39
EciI	GGCGGA	1 cut(s)	396
Eco130I	CCWWGG	3 cut(s)	410, 752, 927
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	64, 124
EcoO109I	RGGNCCY	2 cut(s)	64, 124
EcoRII	CCWGG	1 cut(s)	730
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	410, 752, 927
ErhI	CCWWGG	3 cut(s)	410, 752, 927
FaeI	CATG	6 cut(s)	37, 268, 414, 787, 800, 931
FaqI	GGGAC	5 cut(s)	137, 393, 428, 454, 734
FatI	CATG	6 cut(s)	33, 264, 410, 783, 796, 927
FauNDI	CATATG	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	6 cut(s)	293, 876, 899, 948, 1008, 1011
FokI	GGATG	3 cut(s)	184, 534, 820
Fsp4HI	GCNGC	6 cut(s)	293, 876, 899, 948, 1008, 1011
FspBI	CTAG	1 cut(s)	998
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	6 cut(s)	293, 876, 899, 948, 1008, 1011
HapII	CCGG	1 cut(s)	479
HhaI	GCGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	6 cut(s)	37, 268, 414, 787, 800, 931
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HinfI	GANTC	4 cut(s)	156, 242, 390, 938
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	4 cut(s)	329, 565, 836, 863
Hpy188I	TCNGA	7 cut(s)	155, 313, 389, 501, 713, 973, 1057
Hpy188III	TCNNGA	1 cut(s)	1040
Hpy8I	GTNNAC	4 cut(s)	329, 565, 836, 863
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	55, 178
HpyCH4III	ACNGT	5 cut(s)	347, 384, 725, 774, 867
HpyCH4IV	ACGT	2 cut(s)	223, 541
HpyCH4V	TGCA	9 cut(s)	106, 487, 779, 787, 800, 863, 898, 994, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 1007, 1031
HpyF3I	CTNAG	5 cut(s)	80, 145, 312, 827, 1056
HpySE526I	ACGT	2 cut(s)	223, 541
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	6 cut(s)	37, 268, 414, 787, 800, 931
HspAI	GCGC	1 cut(s)	465
Kzo9I	GATC	3 cut(s)	403, 496, 661
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	277, 532, 634, 1018
Lsp1109I	GCAGC	6 cut(s)	304, 862, 910, 934, 994, 997
LweI	GCATC	2 cut(s)	676, 1033
MaeI	CTAG	1 cut(s)	998
MaeII	ACGT	2 cut(s)	223, 541
MaeIII	GTNAC	2 cut(s)	514, 810
MalI	GATC	3 cut(s)	405, 498, 663
MboI	GATC	3 cut(s)	403, 496, 661
MboII	GAAGA	3 cut(s)	49, 56, 100
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	6 cut(s)	138, 179, 232, 358, 428, 618
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	628
MseI	TTAA	3 cut(s)	69, 471, 551
MslI	CAYNNNNRTG	3 cut(s)	422, 932, 989
MspA1I	CMGCKG	1 cut(s)	989
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	1 cut(s)	732
MunI	CAATTG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	3 cut(s)	39, 1007, 1031
NcoI	CCATGG	2 cut(s)	410, 927
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	3 cut(s)	403, 496, 661
NlaIII	CATG	6 cut(s)	37, 268, 414, 787, 800, 931
NlaIV	GGNNCC	3 cut(s)	125, 273, 663
NmuCI	GTSAC	2 cut(s)	514, 810
NspI	RCATGY	1 cut(s)	787
OliI	CACNNNNGTG	1 cut(s)	989
PaeI	GCATGC	1 cut(s)	787
PaqCI	CACCTGC	1 cut(s)	1057
PciSI	GCTCTTC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	156, 242, 938
PkrI	GCNGC	6 cut(s)	294, 877, 900, 949, 1009, 1012
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PpuMI	RGGWCCY	2 cut(s)	64, 124
Psp5II	RGGWCCY	2 cut(s)	64, 124
Psp6I	CCWGG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	3 cut(s)	125, 273, 663
PspPI	GGNCC	2 cut(s)	64, 124
PspPPI	RGGWCCY	2 cut(s)	64, 124
PstNI	CAGNNNCTG	2 cut(s)	1007, 1031
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	1 cut(s)	837
RsaNI	GTAC	1 cut(s)	836
RseI	CAYNNNNRTG	3 cut(s)	422, 932, 989
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	69, 471, 551
SatI	GCNGC	6 cut(s)	293, 876, 899, 948, 1008, 1011
Sau3AI	GATC	3 cut(s)	403, 496, 661
Sau96I	GGNCC	2 cut(s)	64, 124
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	732
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	2 cut(s)	676, 1033
SinI	GGWCC	2 cut(s)	64, 124
SmiMI	CAYNNNNRTG	3 cut(s)	422, 932, 989
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	787
Sse9I	AATT	6 cut(s)	138, 179, 232, 358, 428, 618
SsiI	CCGC	1 cut(s)	407
SspI	AATATT	2 cut(s)	305, 682
SspMI	CTAG	1 cut(s)	998
StyD4I	CCNGG	1 cut(s)	730
StyI	CCWWGG	3 cut(s)	410, 752, 927
TaaI	ACNGT	5 cut(s)	347, 384, 725, 774, 867
TaiI	ACGT	2 cut(s)	226, 544
TaqI	TCGA	2 cut(s)	113, 240
TasI	AATT	6 cut(s)	138, 179, 232, 358, 428, 618
TfiI	GAWTC	3 cut(s)	156, 242, 938
Tru1I	TTAA	3 cut(s)	69, 471, 551
Tru9I	TTAA	3 cut(s)	69, 471, 551
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	2 cut(s)	514, 810
TseI	GCWGC	6 cut(s)	292, 875, 898, 947, 1007, 1010
Tsp45I	GTSAC	2 cut(s)	514, 810
TspDTI	ATGAA	5 cut(s)	50, 74, 410, 471, 864
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	523
Vha464I	CTTAAG	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	861
VpaK11BI	GGWCC	2 cut(s)	64, 124
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	564
XspI	CTAG	1 cut(s)	998
ZraI	GACGTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.