Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011095

Physical Location & Seq

Genomic Coordinates Forward (+)

6747276 .. 6753675

Gene Structure 6400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGAGACCCAATCTGGCGGCAAAGAAGAGACGGCCATCAAAGCAATGCGCCTAGAGCTCGAAACCCGAATGGAGTCCCAACGCGCCACCCAGCTCGAACTCCTCTCTTATCTCCAATCCGAAATCGACCCCGCCATCGTCCCCGCCATCGATCTCTCCCTCAAGGTCCTCTCTTCCTTCAACAACCGCGCCTTCACTCCCACCCCTCCTCTGCCCGACCCGAAGCCCAACCCCAGAAAGCCCATCGAGCCCGCCCGCCCTCCCTCCCCACAACAACAACAACCCCTCCTCCCTTCGCCCGCCTCCTCCTCCCCCGAAAGCCCCACCCGAGAATCCACCCCCGTCGTCATGGACGACAGCGGCAACCACCCGCTTTCGGTTATCCGGGCCATGATTGCCGTTCGGTTTCTTGAGAGAGTGCCGTTTATGCTGGTCGAGTCCTCGGAGCTGCTGAAGCAGCTCGAGACCGACGCCAAGGCCTCGCCGGAGGAGAAGCTCGCGCTGCGGGAGGTCGGAGGAGAGAACGGGGGGATTCTGGCCGTGGAGATGGCGCTCCGGTCGATGGCCGAGGAGAACGGCGGCGTTATCCTGGAGGAGTACGCGGTCAACGGAAAGTCTAGGGTTACGGTCAGGGATATTGACCGGACTAGGCTGATGAAGGAGTTGCCGGAGAGCAAGCAAGATTCCATTGTGGATGGGAATTTCAATCAGGGTAGTGGCATGGACGGTGGGAATAACAATGGAGGAGGGTTTGTGGGGAGAGGTGGGCCCTGGGTGGTTGGCCCTGAGCCCTACATGAGCGGCTTGCCGCCATTGTTTCCGGGGATAGGTCCCAGAGGAGGGAGAGGGATGATAGGAATGCCGCCGAGAGGGATGATTGGCTCTCCAATGCATAGGCCTAATATGGGGCAGAATGGTGGAATGGTGGTCAGTCCCAATGGAATGCCCAATAAGAGCATGAAGAGTGAAGAGGAAGAGATGAAGGATCTTGAGGCTTTGCTCAGTAAGAAGACTTATAGGGAGTTGCAGAAGTCGAAAACTGGGGAGGAGCTTTTGGACCTCATTCACAGGCCAACTGCAAAGGAGACTGCTGTGGCAAACAAGTTCAAAACTAAAGGTGGTTCACAATTGAAGGAATACTGCACCTCCCTAACGAAAGAGGACTGCCGACGTCAATCTAATTCCTTGCTCGCTTGTGAGAAGGTTCATTTTAGGCGCATAATTGCTCTACATACTGATGTCAACTTGGGAGACTGTTCTTTTCTAGATACTTGCCGCCACATGAAGACATGCAAGTATGTACATTATGAGCTTGATTCAACACCAGATGTGTCAAACATGTTGGCTCCCCCTAAACCACTAAAGCAGCGTGCTGAATATTGTTCTGAGGTAGAACTTGGTCAACCACAGTGGATTAACTGTGATATCCGCAATTTTAGAATGGATATATTGGGACAGTTCGGAGTCATAATGGCTGATCCGCCATGGGACATTCATATGGAATTGCCTTATGGGACTATGGCTGATGATGAAATGCGCACTCTTAATGTTCCTGCATTGCAGACTGATGGTCTGATTTTCCTTTGGGTCACTGGACGTGCGATGGAGCTTGGACGTGAATGTTTAGAACTTTGGGGATACAAGCGTATTGAGGAGATGATTTGGGTGAAAACTAATCAACTGCAACGAATAATTAGAACTGGGCGCACCGGCCACTGGCTAAATCATAGCAAGGAGCATTGCCTCGTTGGAATAAAAGGAGATCCATTAGTAAATAGGAATATTGATACTGATGTCATTGTTGCTGAGGTCAGAGAGACAAGTCGTAAGCCAGACGAGGTTAGTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

617

Amino Acids

68.66

Weight (kDa)

5.76

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MT-A70	PF05063	487 - 617	8.3e-48	MT-A70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10760
fragaria_vesca	FvH4_5g11050 FvH4_5g11050
malus_domestica	MD06G1116900.v1.1 MD14G1124400.v1.1
prunus_persica	Prupe.5G128200_v2.0.a1
pyrus_communis	pycom06g10900
rosa_chinensis	RchiOBHm_Chr7g0186271 RchiOBHm_Chr7g0186751
rosa_laevigata	RLG00000004819
rosa_multiflora	Rmu_sc0009734.1_g000004
rosa_roxburghii	Rroxscaffold_3G00267860
rosa_rugosa	Rorug06G0473000 Rorug06G0476300
rosa_samantha	Rh7AG064200 Rh7BG080700 Rh7CG083300 Rh7DG084200
rosa_wichuraiana	Rw7G006690 Rw7G007220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1174
Acc16I	TGCGCA	1 cut(s)	1538
AccBSI	CCGCTC	1 cut(s)	801
AccII	CGCG	4 cut(s)	84, 189, 500, 602
AclWI	GGATC	3 cut(s)	993, 1472, 1757
AcoI	YGGCCR	4 cut(s)	33, 537, 564, 1711
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	473
AcyI	GRCGYC	2 cut(s)	471, 1171
AfaI	GTAC	2 cut(s)	599, 1302
AfiI	CCNNNNNNNGG	8 cut(s)	376, 562, 827, 839, 840, 869, 905, 1716
AflIII	ACRYGT	1 cut(s)	1338
AgsI	TTSAA	5 cut(s)	181, 706, 1108, 1132, 1320
AhdI	GACNNNNNGTC	1 cut(s)	1569
AjiI	CACGTC	2 cut(s)	1598, 1616
AjnI	CCWGG	2 cut(s)	588, 770
AluBI	AGCT	8 cut(s)	58, 94, 448, 460, 496, 1051, 1312, 1609
AluI	AGCT	8 cut(s)	58, 94, 448, 460, 496, 1051, 1312, 1609
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	5 cut(s)	23, 458, 1079, 1245, 1811
AlwI	GGATC	3 cut(s)	993, 1472, 1757
Ama87I	CYCGRG	2 cut(s)	327, 461
ApaI	GGGCCC	1 cut(s)	771
ApeKI	GCWGC	4 cut(s)	448, 457, 502, 1366
ApoI	RAATTY	1 cut(s)	700
AspLEI	GCGC	8 cut(s)	51, 86, 191, 502, 553, 1218, 1539, 1707
AspS9I	GGNCC	7 cut(s)	166, 387, 767, 768, 782, 830, 1057
AsuC2I	CCSGG	2 cut(s)	386, 822
AsuHPI	GGTGA	1 cut(s)	1678
AvaI	CYCGRG	2 cut(s)	327, 461
AvaII	GGWCC	3 cut(s)	166, 830, 1057
BaeGI	GKGCMC	1 cut(s)	771
BaeI	ACNNNNGTAYC	4 cut(s)	1630, 1663, 1779, 1812
BanII	GRGCYC	4 cut(s)	60, 252, 771, 792
BbsI	GAAGAC	2 cut(s)	1016, 1292
Bbv12I	GWGCWC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	1806
BbvI	GCAGC	4 cut(s)	435, 469, 489, 1378
BccI	CCATC	9 cut(s)	44, 143, 155, 251, 541, 556, 689, 1562, 1597
BceAI	ACGGC	5 cut(s)	48, 383, 406, 524, 592
BciT130I	CCWGG	2 cut(s)	590, 772
BciVI	GTATCC	1 cut(s)	1631
BcnI	CCSGG	2 cut(s)	386, 822
BcoDI	GTCTC	5 cut(s)	23, 458, 1079, 1245, 1811
BfaI	CTAG	4 cut(s)	53, 618, 648, 1265
BfoI	RGCGCY	1 cut(s)	554
BfuI	GTATCC	1 cut(s)	1631
Bme1390I	CCNGG	4 cut(s)	386, 590, 772, 822
Bme18I	GGWCC	3 cut(s)	166, 830, 1057
BmeRI	GACNNNNNGTC	1 cut(s)	1569
BmeT110I	CYCGRG	2 cut(s)	327, 461
BmgBI	CACGTC	2 cut(s)	1598, 1616
BmgT120I	GGNCC	7 cut(s)	166, 387, 767, 768, 782, 830, 1057
BmiI	GGNNCC	3 cut(s)	769, 832, 1347
BmrFI	CCNGG	4 cut(s)	386, 590, 772, 822
BmrI	ACTGGG	2 cut(s)	1050, 1710
BmuI	ACTGGG	2 cut(s)	1050, 1710
BpiI	GAAGAC	2 cut(s)	1016, 1292
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	2 cut(s)	786, 1806
BpuEI	CTTGAG	3 cut(s)	146, 431, 1010
BpuMI	CCSGG	2 cut(s)	386, 822
Bsa29I	ATCGAT	1 cut(s)	150
BsaHI	GRCGYC	2 cut(s)	471, 1171
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	8 cut(s)	441, 474, 540, 567, 770, 771, 821, 1484
BsaWI	WCCGGW	2 cut(s)	555, 642
BsaXI	ACNNNNNCTCC	8 cut(s)	270, 273, 300, 303, 738, 768, 1130, 1160
Bsc4I	CCNNNNNNNGG	8 cut(s)	376, 562, 827, 839, 840, 869, 905, 1716
Bse118I	RCCGGY	1 cut(s)	1709
Bse1I	ACTGG	4 cut(s)	1045, 1597, 1705, 1721
Bse3DI	GCAATG	3 cut(s)	51, 1556, 1738
BseBI	CCWGG	2 cut(s)	590, 772
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	8 cut(s)	441, 474, 540, 567, 770, 771, 821, 1484
BseGI	GGATG	3 cut(s)	700, 855, 879
BseLI	CCNNNNNNNGG	8 cut(s)	376, 562, 827, 839, 840, 869, 905, 1716
BseMI	GCAATG	3 cut(s)	51, 1556, 1738
BseMII	CTCAG	4 cut(s)	777, 1015, 1377, 1797
BseNI	ACTGG	4 cut(s)	1045, 1597, 1705, 1721
BseSI	GKGCMC	1 cut(s)	771
BseXI	GCAGC	4 cut(s)	435, 469, 489, 1378
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	1126
Bsh1236I	CGCG	4 cut(s)	84, 189, 500, 602
Bsh1285I	CGRYCG	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	2 cut(s)	327, 461
BsiSI	CCGG	7 cut(s)	385, 485, 556, 643, 668, 821, 1710
BslFI	GGGAC	7 cut(s)	61, 125, 816, 918, 1467, 1502, 1528
BslI	CCNNNNNNNGG	8 cut(s)	376, 562, 827, 839, 840, 869, 905, 1716
BsmAI	GTCTC	5 cut(s)	23, 458, 1079, 1245, 1811
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	7 cut(s)	61, 125, 816, 918, 1467, 1502, 1528
BsmI	GAATGC	2 cut(s)	864, 948
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	2 cut(s)	327, 461
Bsp120I	GGGCCC	1 cut(s)	767
Bsp1286I	GDGCHC	4 cut(s)	60, 252, 771, 792
Bsp1407I	TGTACA	1 cut(s)	1300
Bsp143I	GATC	4 cut(s)	151, 985, 1477, 1762
Bsp19I	CCATGG	1 cut(s)	1484
BspCNI	CTCAG	4 cut(s)	778, 1014, 1378, 1798
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	4 cut(s)	84, 189, 500, 602
BspLI	GGNNCC	3 cut(s)	769, 832, 1347
BspPI	GGATC	3 cut(s)	993, 1472, 1757
BspTNI	GGTCTC	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	801
BsrDI	GCAATG	3 cut(s)	51, 1556, 1738
BsrFI	RCCGGY	1 cut(s)	1709
BsrGI	TGTACA	1 cut(s)	1300
BsrI	ACTGG	4 cut(s)	1045, 1597, 1705, 1721
BssAI	RCCGGY	1 cut(s)	1709
BssECI	CCNNGG	8 cut(s)	441, 474, 540, 567, 770, 771, 821, 1484
BssMI	GATC	4 cut(s)	151, 985, 1477, 1762
BssNI	GRCGYC	2 cut(s)	471, 1171
BssT1I	CCWWGG	2 cut(s)	474, 1484
Bst2UI	CCWGG	2 cut(s)	590, 772
Bst4CI	ACNGT	6 cut(s)	628, 728, 1256, 1410, 1421, 1458
Bst6I	CTCTTC	5 cut(s)	21, 178, 956, 963, 969
BstACI	GRCGYC	2 cut(s)	471, 1171
BstAUI	TGTACA	1 cut(s)	1300
BstC8I	GCNNGC	8 cut(s)	252, 256, 300, 498, 677, 806, 1191, 1371
BstDEI	CTNAG	4 cut(s)	786, 1001, 1386, 1806
BstDSI	CCRYGG	2 cut(s)	540, 1484
BstF5I	GGATG	3 cut(s)	700, 855, 879
BstFNI	CGCG	4 cut(s)	84, 189, 500, 602
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	8 cut(s)	51, 86, 191, 502, 553, 1218, 1539, 1707
BstKTI	GATC	4 cut(s)	154, 988, 1480, 1765
BstMAI	GTCTC	5 cut(s)	23, 458, 1079, 1245, 1811
BstMBI	GATC	4 cut(s)	151, 985, 1477, 1762
BstMCI	CGRYCG	1 cut(s)	560
BstMWI	GCNNNNNNNGC	8 cut(s)	41, 55, 247, 395, 427, 454, 457, 502
BstNI	CCWGG	2 cut(s)	590, 772
BstNSI	RCATGY	2 cut(s)	1293, 1342
BstSCI	CCNGG	4 cut(s)	384, 588, 770, 820
BstSLI	GKGCMC	1 cut(s)	771
BstUI	CGCG	4 cut(s)	84, 189, 500, 602
BstV1I	GCAGC	4 cut(s)	435, 469, 489, 1378
BstV2I	GAAGAC	2 cut(s)	1016, 1292
BstX2I	RGATCY	2 cut(s)	985, 1762
BstYI	RGATCY	2 cut(s)	985, 1762
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	1631
BsuTUI	ATCGAT	1 cut(s)	150
BtgI	CCRYGG	2 cut(s)	540, 1484
BtgZI	GCGATG	1 cut(s)	1616
BtrI	CACGTC	2 cut(s)	1598, 1616
BtsCI	GGATG	3 cut(s)	700, 855, 879
BtsIMutI	CAGTG	3 cut(s)	1415, 1590, 1714
Cac8I	GCNNGC	8 cut(s)	252, 256, 300, 498, 677, 806, 1191, 1371
CfoI	GCGC	8 cut(s)	51, 86, 191, 502, 553, 1218, 1539, 1707
Cfr10I	RCCGGY	1 cut(s)	1709
Cfr13I	GGNCC	7 cut(s)	166, 387, 767, 768, 782, 830, 1057
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	598, 1301
CspCI	CAANNNNNGTGG	2 cut(s)	1391, 1426
CviAII	CATG	9 cut(s)	349, 391, 721, 796, 958, 1282, 1290, 1339, 1485
CviQI	GTAC	2 cut(s)	598, 1301
DdeI	CTNAG	4 cut(s)	786, 1001, 1386, 1806
DpnI	GATC	4 cut(s)	153, 987, 1479, 1764
DpnII	GATC	4 cut(s)	151, 985, 1477, 1762
DriI	GACNNNNNGTC	1 cut(s)	1569
EaeI	YGGCCR	4 cut(s)	33, 537, 564, 1711
Eam1104I	CTCTTC	5 cut(s)	21, 178, 956, 963, 969
Eam1105I	GACNNNNNGTC	1 cut(s)	1569
EarI	CTCTTC	5 cut(s)	21, 178, 956, 963, 969
EciI	GGCGGA	1 cut(s)	1470
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	474, 1484
Eco147I	AGGCCT	2 cut(s)	479, 898
Eco24I	GRGCYC	4 cut(s)	60, 252, 771, 792
Eco31I	GGTCTC	1 cut(s)	458
Eco32I	GATATC	1 cut(s)	1426
Eco47I	GGWCC	3 cut(s)	166, 830, 1057
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	2 cut(s)	327, 461
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	3 cut(s)	166, 768, 830
EcoRII	CCWGG	2 cut(s)	588, 770
EcoRV	GATATC	1 cut(s)	1426
EcoT14I	CCWWGG	2 cut(s)	474, 1484
EcoT22I	ATGCAT	1 cut(s)	894
EcoT38I	GRGCYC	4 cut(s)	60, 252, 771, 792
ErhI	CCWWGG	2 cut(s)	474, 1484
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	9 cut(s)	352, 394, 724, 799, 961, 1285, 1293, 1342, 1488
FaqI	GGGAC	7 cut(s)	61, 125, 816, 918, 1467, 1502, 1528
FatI	CATG	9 cut(s)	348, 390, 720, 795, 957, 1281, 1289, 1338, 1484
FauI	CCCGC	7 cut(s)	139, 151, 259, 263, 307, 378, 498
FauNDI	CATATG	1 cut(s)	1497
FokI	GGATG	3 cut(s)	707, 862, 886
FriOI	GRGCYC	4 cut(s)	60, 252, 771, 792
FspAI	RTGCGCAY	1 cut(s)	1538
FspBI	CTAG	4 cut(s)	53, 618, 648, 1265
FspI	TGCGCA	1 cut(s)	1538
GlaI	GCGC	8 cut(s)	50, 85, 190, 501, 552, 1217, 1538, 1706
GsaI	CCCAGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	611
HaeII	RGCGCY	1 cut(s)	554
HapII	CCGG	7 cut(s)	385, 485, 556, 643, 668, 821, 1710
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	8 cut(s)	51, 86, 191, 502, 553, 1218, 1539, 1707
Hin1I	GRCGYC	2 cut(s)	471, 1171
Hin1II	CATG	9 cut(s)	352, 394, 724, 799, 961, 1285, 1293, 1342, 1488
Hin6I	GCGC	8 cut(s)	49, 84, 189, 500, 551, 1216, 1537, 1705
HinP1I	GCGC	8 cut(s)	49, 84, 189, 500, 551, 1216, 1537, 1705
HincII	GTYRAC	3 cut(s)	607, 1243, 1403
HindII	GTYRAC	3 cut(s)	607, 1243, 1403
HinfI	GANTC	7 cut(s)	74, 332, 437, 532, 683, 1316, 1464
HpaII	CCGG	7 cut(s)	385, 485, 556, 643, 668, 821, 1710
HphI	GGTGA	1 cut(s)	1678
Hpy166II	GTNNAC	4 cut(s)	607, 1124, 1243, 1403
Hpy188I	TCNGA	7 cut(s)	121, 445, 515, 1387, 1463, 1575, 1814
Hpy188III	TCNNGA	4 cut(s)	410, 463, 989, 1265
Hpy8I	GTNNAC	4 cut(s)	607, 1124, 1243, 1403
Hpy99I	CGWCG	3 cut(s)	347, 473, 1173
HpyAV	CCTTC	7 cut(s)	187, 202, 303, 652, 976, 1126, 1195
HpyCH4III	ACNGT	6 cut(s)	628, 728, 1256, 1410, 1421, 1458
HpyCH4IV	ACGT	3 cut(s)	1171, 1597, 1615
HpyCH4V	TGCA	8 cut(s)	892, 1027, 1079, 1143, 1293, 1556, 1561, 1684
HpyF10VI	GCNNNNNNNGC	8 cut(s)	41, 55, 247, 395, 427, 454, 457, 502
HpyF3I	CTNAG	4 cut(s)	786, 1001, 1386, 1806
HpySE526I	ACGT	3 cut(s)	1171, 1597, 1615
Hsp92I	GRCGYC	2 cut(s)	471, 1171
Hsp92II	CATG	9 cut(s)	352, 394, 724, 799, 961, 1285, 1293, 1342, 1488
HspAI	GCGC	8 cut(s)	49, 84, 189, 500, 551, 1216, 1537, 1705
Kzo9I	GATC	4 cut(s)	151, 985, 1477, 1762
LmnI	GCTCC	6 cut(s)	445, 558, 1048, 1351, 1606, 1735
Lsp1109I	GCAGC	4 cut(s)	435, 469, 489, 1378
MaeI	CTAG	4 cut(s)	53, 618, 648, 1265
MaeII	ACGT	3 cut(s)	1171, 1597, 1615
MaeIII	GTNAC	2 cut(s)	622, 1588
MalI	GATC	4 cut(s)	153, 987, 1479, 1764
MbiI	CCGCTC	1 cut(s)	801
MboI	GATC	4 cut(s)	151, 985, 1477, 1762
MboII	GAAGA	7 cut(s)	38, 165, 973, 980, 986, 1021, 1297
MfeI	CAATTG	1 cut(s)	1127
MflI	RGATCY	2 cut(s)	985, 1762
MhlI	GDGCHC	4 cut(s)	60, 252, 771, 792
MluCI	AATT	7 cut(s)	700, 1127, 1180, 1221, 1432, 1502, 1692
MlyI	GAGTC	3 cut(s)	83, 446, 1473
MmeI	TCCRAC	2 cut(s)	493, 1729
Mph1103I	ATGCAT	1 cut(s)	894
MseI	TTAA	2 cut(s)	1416, 1545
MslI	CAYNNNNRTG	2 cut(s)	1236, 1496
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	7 cut(s)	385, 485, 556, 643, 668, 821, 1710
MspR9I	CCNGG	4 cut(s)	386, 590, 772, 822
MunI	CAATTG	1 cut(s)	1127
Mva1269I	GAATGC	2 cut(s)	864, 948
MvaI	CCWGG	2 cut(s)	590, 772
MvnI	CGCG	4 cut(s)	84, 189, 500, 602
MwoI	GCNNNNNNNGC	8 cut(s)	41, 55, 247, 395, 427, 454, 457, 502
NciI	CCSGG	2 cut(s)	386, 822
NcoI	CCATGG	1 cut(s)	1484
NdeI	CATATG	1 cut(s)	1497
NdeII	GATC	4 cut(s)	151, 985, 1477, 1762
NlaIII	CATG	9 cut(s)	352, 394, 724, 799, 961, 1285, 1293, 1342, 1488
NlaIV	GGNNCC	3 cut(s)	769, 832, 1347
NmeAIII	GCCGAG	2 cut(s)	592, 891
NmuCI	GTSAC	1 cut(s)	1588
NsbI	TGCGCA	1 cut(s)	1538
NsiI	ATGCAT	1 cut(s)	894
NspI	RCATGY	2 cut(s)	1293, 1342
PaeR7I	CTCGAG	1 cut(s)	461
PasI	CCCWGGG	1 cut(s)	771
PceI	AGGCCT	2 cut(s)	479, 898
PciI	ACATGT	1 cut(s)	1338
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	2 cut(s)	864, 948
PfeI	GAWTC	4 cut(s)	332, 532, 683, 1316
PfoI	TCCNGGA	1 cut(s)	588
PleI	GAGTC	3 cut(s)	82, 445, 1472
PpsI	GAGTC	3 cut(s)	82, 445, 1472
PpuMI	RGGWCCY	2 cut(s)	166, 830
PscI	ACATGT	1 cut(s)	1338
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	2 cut(s)	166, 830
Psp6I	CCWGG	2 cut(s)	588, 770
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	2 cut(s)	588, 770
PspN4I	GGNNCC	3 cut(s)	769, 832, 1347
PspOMI	GGGCCC	1 cut(s)	767
PspPI	GGNCC	7 cut(s)	166, 387, 767, 768, 782, 830, 1057
PspPPI	RGGWCCY	2 cut(s)	166, 830
PsuI	RGATCY	2 cut(s)	985, 1762
RsaI	GTAC	2 cut(s)	599, 1302
RsaNI	GTAC	2 cut(s)	598, 1301
RseI	CAYNNNNRTG	2 cut(s)	1236, 1496
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	1416, 1545
Sau3AI	GATC	4 cut(s)	151, 985, 1477, 1762
Sau96I	GGNCC	7 cut(s)	166, 387, 767, 768, 782, 830, 1057
SchI	GAGTC	3 cut(s)	83, 446, 1473
ScrFI	CCNGG	4 cut(s)	386, 590, 772, 822
SduI	GDGCHC	4 cut(s)	60, 252, 771, 792
Sfr274I	CTCGAG	1 cut(s)	461
SinI	GGWCC	3 cut(s)	166, 830, 1057
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	2 cut(s)	1236, 1496
SmlI	CTYRAG	4 cut(s)	161, 410, 461, 989
SmoI	CTYRAG	4 cut(s)	161, 410, 461, 989
Sse9I	AATT	7 cut(s)	700, 1127, 1180, 1221, 1432, 1502, 1692
SseBI	AGGCCT	2 cut(s)	479, 898
SspI	AATATT	2 cut(s)	1379, 1783
SspMI	CTAG	4 cut(s)	53, 618, 648, 1265
SstI	GAGCTC	1 cut(s)	60
StuI	AGGCCT	2 cut(s)	479, 898
StyD4I	CCNGG	4 cut(s)	384, 588, 770, 820
StyI	CCWWGG	2 cut(s)	474, 1484
TaaI	ACNGT	6 cut(s)	628, 728, 1256, 1410, 1421, 1458
TaiI	ACGT	3 cut(s)	1174, 1600, 1618
TaqI	TCGA	9 cut(s)	60, 96, 126, 150, 246, 435, 462, 560, 1034
TaqII	GACCGA	1 cut(s)	482
TasI	AATT	7 cut(s)	700, 1127, 1180, 1221, 1432, 1502, 1692
TatI	WGTACW	1 cut(s)	1300
TauI	GCSGC	7 cut(s)	21, 363, 582, 804, 811, 865, 1278
TfiI	GAWTC	4 cut(s)	332, 532, 683, 1316
Tru1I	TTAA	2 cut(s)	1416, 1545
Tru9I	TTAA	2 cut(s)	1416, 1545
TscAI	CASTG	3 cut(s)	1415, 1597, 1721
TseFI	GTSAC	1 cut(s)	1588
TseI	GCWGC	4 cut(s)	448, 457, 502, 1366
Tsp45I	GTSAC	1 cut(s)	1588
TspDTI	ATGAA	7 cut(s)	671, 974, 995, 1196, 1298, 1484, 1545
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	3 cut(s)	1415, 1597, 1721
VpaK11BI	GGWCC	3 cut(s)	166, 830, 1057
XapI	RAATTY	1 cut(s)	700
XbaI	TCTAGA	1 cut(s)	1264
XceI	RCATGY	2 cut(s)	1293, 1342
XhoI	CTCGAG	1 cut(s)	461
XspI	CTAG	4 cut(s)	53, 618, 648, 1265
ZraI	GACGTC	1 cut(s)	1172
Zsp2I	ATGCAT	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.