RchiOBHm_Chr7g0199611

Subtilase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012611
Physical Location & Seq
Forward (+)
17690114 .. 17691110
997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17863

Sequence Viewer

Length: 621 bp
ATGGCCAAGAGAGGAAGGTATGTTAATATAGGTTCACATTGTATACATGGGAGAGCGGCACCATGGAGATTTTTCTGCTCAATCCACACACCATTCAGTGCTACAAAGCGTACTTGGAAGGTCAATAACACTAAAATAAGACCAAGAGTTTTTGTTTTTCCCGATTGGCAAAATGCTCTACTTACTTATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAACTCTACTTACTTGCCATACAAGTCAGATATCTCAAGCATTTGTGTTTTCCCAATTGCAGCTTCAAGTTGGCCAAAGAGTCGCTGATCTATAGTTATGGGAAGAGCTTTAATGGGTTTTCCGCAAAGTTGTCGGATGAAGAAGTTGCAGAGTTGGCAGAAATGGAAGGTATAGTTTCAGTGATTCCAAACCACAGACTAAAGCTTCACACAACAAGGTCGTGGGACTTCATGGGTTTCAGCAAAGGCCAACGTGGAGCATCTGTAGGAGAAGAGGTTGTGATAGGGCTTCTAGACTCAGGAATCTGGCCGGAATCTGATAGCTTCAGTGATGATGGCTTTGGCCCTCCACCTAAGAAATGGAAAGGCAAATGCAAAGGTGCCAACTTCACCTGCAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

206

Amino Acids

23.47

Weight (kDa)

9.92

Isoelectric Point (pI)

18.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 96 - 142 4.1e-13 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01310
malus_domestica MD06G1070500.v1.1
prunus_persica Prupe.5G088500_v2.0.a1 Prupe.5G088600_v2.0.a1
pyrus_communis pycom06g07000 pycom06g07030
rosa_chinensis RchiOBHm_Chr7g0199611
rosa_laevigata RLG00000003781
rosa_multiflora Rmu_sc0009191.1_g000006
rosa_roxburghii Rroxscaffold_3G00256540
rosa_rugosa Rorug07G0055500
rosa_samantha Rh7AG180400 Rh7AG180600 Rh7BG183400 Rh7CG190100 Rh7CG190300 Rh7DG183300 Rh7DG183500
rosa_wichuraiana Rw7G015850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 617
AccB1I GGYRCC 2 cut(s) 58, 596
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 43
AciI CCGC 2 cut(s) 56, 339
AcoI YGGCCR 3 cut(s) 3, 288, 524
AcuI CTGAAG 1 cut(s) 526
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 4 cut(s) 279, 324, 421, 540
AluI AGCT 4 cut(s) 279, 324, 421, 540
AoxI GGCC 5 cut(s) 3, 288, 463, 524, 559
ApeKI GCWGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 598
BalI TGGCCA 2 cut(s) 5, 290
BanI GGYRCC 2 cut(s) 58, 596
BbvI GCAGC 1 cut(s) 288
BccI CCATC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 2 cut(s) 307, 480
BfuAI ACCTGC 1 cut(s) 617
BisI GCNGC 2 cut(s) 57, 277
BlsI GCNGC 2 cut(s) 58, 278
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 2 cut(s) 60, 598
BmsI GCATC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 62
BsaXI ACNNNNNCTCC 4 cut(s) 465, 477, 495, 507
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 528
BseXI GCAGC 1 cut(s) 288
BshFI GGCC 5 cut(s) 5, 290, 465, 526, 561
BshNI GGYRCC 2 cut(s) 58, 596
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 5 cut(s) 5, 290, 465, 526, 561
Bsp143I GATC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 62
BspACI CCGC 2 cut(s) 56, 339
BspANI GGCC 5 cut(s) 5, 290, 465, 526, 561
BspCNI CTCAG 1 cut(s) 527
BspLI GGNNCC 2 cut(s) 60, 598
BspMI ACCTGC 1 cut(s) 617
BspQI GCTCTTC 1 cut(s) 314
BspT107I GGYRCC 2 cut(s) 58, 596
BsrBI CCGCTC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 303
BssNAI GTATAC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 62
Bst1107I GTATAC 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 314, 483
BstDEI CTNAG 2 cut(s) 514, 570
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 1 cut(s) 306
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstSFI CTRYAG 2 cut(s) 307, 480
BstV1I GCAGC 1 cut(s) 288
BstZ17I GTATAC 1 cut(s) 44
BsuRI GGCC 5 cut(s) 5, 290, 465, 526, 561
BtgI CCRYGG 1 cut(s) 62
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 3 cut(s) 103, 402, 550
BveI ACCTGC 1 cut(s) 617
Cfr13I GGNCC 1 cut(s) 560
Csp6I GTAC 1 cut(s) 111
CviAII CATG 3 cut(s) 47, 63, 448
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 2 cut(s) 514, 570
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
EaeI YGGCCR 3 cut(s) 3, 288, 524
Eam1104I CTCTTC 2 cut(s) 314, 483
EarI CTCTTC 2 cut(s) 314, 483
Eco130I CCWWGG 1 cut(s) 62
Eco32I GATATC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 526
EcoRV GATATC 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 3 cut(s) 50, 66, 451
FaqI GGGAC 1 cut(s) 455
FatI CATG 3 cut(s) 46, 62, 447
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 57, 277
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 57, 277
FspBI CTAG 1 cut(s) 509
GluI GCNGC 2 cut(s) 57, 277
HaeIII GGCC 5 cut(s) 5, 290, 465, 526, 561
HapII CCGG 1 cut(s) 527
Hin1II CATG 3 cut(s) 50, 66, 451
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 5 cut(s) 296, 400, 512, 519, 530
HpaII CCGG 1 cut(s) 527
HphI GGTGA 1 cut(s) 598
Hpy166II GTNNAC 2 cut(s) 35, 44
Hpy188I TCNGA 3 cut(s) 245, 352, 535
Hpy188III TCNNGA 3 cut(s) 161, 509, 516
Hpy8I GTNNAC 2 cut(s) 35, 44
HpyAV CCTTC 3 cut(s) 9, 112, 377
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 4 cut(s) 276, 365, 591, 612
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 514, 570
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 3 cut(s) 50, 66, 451
Kzo9I GATC 1 cut(s) 303
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 473
LpnPI CCDG 3 cut(s) 501, 508, 540
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 1 cut(s) 485
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 469
MalI GATC 1 cut(s) 305
MbiI CCGCTC 1 cut(s) 56
MboI GATC 1 cut(s) 303
MboII GAAGA 3 cut(s) 331, 368, 500
MfeI CAATTG 1 cut(s) 271
MlsI TGGCCA 2 cut(s) 5, 290
MluCI AATT 1 cut(s) 271
MluNI TGGCCA 2 cut(s) 5, 290
MlyI GAGTC 2 cut(s) 305, 506
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 3 cut(s) 5, 484, 573
Mox20I TGGCCA 2 cut(s) 5, 290
MscI TGGCCA 2 cut(s) 5, 290
MseI TTAA 2 cut(s) 24, 327
Msp20I TGGCCA 2 cut(s) 5, 290
MspI CCGG 1 cut(s) 527
MunI CAATTG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 371
NcoI CCATGG 1 cut(s) 62
NdeII GATC 1 cut(s) 303
NlaIII CATG 3 cut(s) 50, 66, 451
NlaIV GGNNCC 2 cut(s) 60, 598
PaqCI CACCTGC 1 cut(s) 617
PciSI GCTCTTC 1 cut(s) 314
PfeI GAWTC 3 cut(s) 400, 519, 530
PkrI GCNGC 2 cut(s) 58, 278
PleI GAGTC 2 cut(s) 304, 506
PpsI GAGTC 2 cut(s) 304, 506
PspN4I GGNNCC 2 cut(s) 60, 598
PspPI GGNCC 1 cut(s) 560
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 24, 327
SatI GCNGC 2 cut(s) 57, 277
Sau3AI GATC 1 cut(s) 303
Sau96I GGNCC 1 cut(s) 560
SchI GAGTC 2 cut(s) 305, 506
SfaNI GCATC 1 cut(s) 485
SfcI CTRYAG 2 cut(s) 307, 480
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 271
SsiI CCGC 2 cut(s) 56, 339
SspMI CTAG 1 cut(s) 509
StyI CCWWGG 1 cut(s) 62
TaiI ACGT 1 cut(s) 472
TasI AATT 1 cut(s) 271
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 3 cut(s) 400, 519, 530
Tru1I TTAA 2 cut(s) 24, 327
Tru9I TTAA 2 cut(s) 24, 327
TscAI CASTG 3 cut(s) 103, 402, 550
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 369, 436
TspRI CASTG 3 cut(s) 103, 402, 550
XbaI TCTAGA 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.