Rh7CG190300

Subtilase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012611
Physical Location & Seq
Forward (+)
16778580 .. 16779859
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG190300.1

Sequence Viewer

Length: 882 bp
ATGGCAGATTCATCTTCCTCTGATTTGGCACTTAATTACCCGTTAGCAGCAACTGTGGTTACAATAGGAGATGGACAGAGAATTATGAACTATATTAGATCAACAGCGAATCCAAATGCAACAATTCTTGTTGGCGAGACGGACATGGATATCATGGCACCTGTTGTTGTGTCATTTTCTTCTAGAGGACCCAACCCTATAACCCCAGATATCCTCAAGCCTGATCTGACCGCCCCTGGTGTTGACATACTTGCTGCTTGGTCTCCAGTGGCACTGCCTTCCATTTACGAAGATGACACCAGGACTCATGTCCTGGATCCAAAGAAGCATGAAGACCTTGAATTCGCTTATGGGTCTGGTCACATCAACCCTCTGAAAGCAGTAGACCCCGGGCTTGTTTTTGATGCACATGTAGCAGACTATGTACATTTCCTCTGCAAGCAGGGTTACAATACCACCACTTTGAAGCTCATCACTGGTGACAACAGCAGTACTTGTGGCAGGACAAAGCCAGGAAGAGCTTGGGATCTTAACTATCCATCGTTCTCTCTAGCAGTTGAAGATGGCCAGCATATCAATGCTGTCTTTACTAGAACAGTCACAAATGTGGGATCACCAAACTCAACCTATACTATTAAGGCGCACACACCCTCCTCAAGTGTTTCGGTAAAACCATCAACCATTTCTTTCTCTTCTGTCAGTGAGAAGAAATCCTTCACAGTCAAGGTAATTGGTCCGCCTATTGCACAGCAGCCGATCATGTCCGGTGCAATCGTGTTGACTGATGGGATCCATCTGGTGAGAAGCCCTCTCGTTATCTACACAATCCTCCCTGGTGCTGCACATTCGTACTCCATACCTGAGAAAAAAACCAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 Peptidase_S8

Protein Analysis

293

Amino Acids

31.38

Weight (kDa)

6.29

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 176 - 273 1.4e-24 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012611)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01310
malus_domestica MD06G1070500.v1.1
prunus_persica Prupe.5G088500_v2.0.a1 Prupe.5G088600_v2.0.a1
pyrus_communis pycom06g07000 pycom06g07030
rosa_chinensis RchiOBHm_Chr7g0199611
rosa_laevigata RLG00000003781
rosa_multiflora Rmu_sc0009191.1_g000006
rosa_roxburghii Rroxscaffold_3G00256540
rosa_rugosa Rorug07G0055500
rosa_samantha Rh7AG180400 Rh7AG180600 Rh7BG183400 Rh7CG190100 Rh7CG190300 Rh7DG183300 Rh7DG183500
rosa_wichuraiana Rw7G015850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 384
AciI CCGC 2 cut(s) 231, 737
AclWI GGATC 6 cut(s) 311, 324, 534, 619, 784, 797
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 3 cut(s) 426, 493, 851
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 3 cut(s) 341, 466, 560
AjnI CCWGG 5 cut(s) 235, 299, 312, 511, 832
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 2 cut(s) 469, 521
AluI AGCT 2 cut(s) 469, 521
Alw26I GTCTC 2 cut(s) 131, 267
AlwI GGATC 6 cut(s) 311, 324, 534, 619, 784, 797
AlwNI CAGNNNCTG 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 4 cut(s) 47, 254, 751, 839
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
Asp700I GAANNNNTTC 1 cut(s) 713
AspLEI GCGC 1 cut(s) 643
AspS9I GGNCC 2 cut(s) 188, 734
AsuC2I CCSGG 2 cut(s) 390, 391
AsuHPI GGTGA 3 cut(s) 491, 606, 811
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 2 cut(s) 188, 734
BalI TGGCCA 1 cut(s) 567
BamHI GGATCC 2 cut(s) 316, 789
BanI GGYRCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 4 cut(s) 59, 241, 763, 826
BccI CCATC 6 cut(s) 65, 547, 557, 682, 779, 801
BciT130I CCWGG 5 cut(s) 237, 301, 314, 513, 834
BcnI CCSGG 2 cut(s) 390, 391
BcoDI GTCTC 2 cut(s) 131, 267
BfaI CTAG 3 cut(s) 183, 551, 591
BisI GCNGC 4 cut(s) 48, 255, 752, 840
BlsI GCNGC 4 cut(s) 49, 256, 753, 841
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 7 cut(s) 237, 301, 314, 390, 391, 513, 834
Bme18I GGWCC 2 cut(s) 188, 734
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 2 cut(s) 188, 734
BmiI GGNNCC 4 cut(s) 159, 190, 318, 791
BmrFI CCNGG 7 cut(s) 237, 301, 314, 390, 391, 513, 834
BmsI GCATC 1 cut(s) 394
BoxI GACNNNNGTC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 339
BplI GAGNNNNNCTC 2 cut(s) 793, 825
BpmI CTGGAG 1 cut(s) 249
BpuEI CTTGAG 2 cut(s) 200, 640
BpuMI CCSGG 2 cut(s) 390, 391
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 235, 388, 389, 832
BsaWI WCCGGW 1 cut(s) 764
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bse1I ACTGG 2 cut(s) 266, 481
BseBI CCWGG 5 cut(s) 237, 301, 314, 513, 834
BseDI CCNNGG 4 cut(s) 235, 388, 389, 832
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 2 cut(s) 266, 481
BseRI GAGGAG 1 cut(s) 643
BseXI GCAGC 4 cut(s) 59, 241, 763, 826
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 1 cut(s) 567
BshNI GGYRCC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 390, 765
BsmAI GTCTC 2 cut(s) 131, 267
BsmBI CGTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 567
Bso31I GGTCTC 1 cut(s) 267
BsoBI CYCGRG 1 cut(s) 389
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
BspACI CCGC 2 cut(s) 231, 737
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 1 cut(s) 853
BspLI GGNNCC 4 cut(s) 159, 190, 318, 791
BspPI GGATC 6 cut(s) 311, 324, 534, 619, 784, 797
BspQI GCTCTTC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 2 cut(s) 266, 481
BssECI CCNNGG 4 cut(s) 235, 388, 389, 832
BssMI GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
Bst2UI CCWGG 5 cut(s) 237, 301, 314, 513, 834
Bst4CI ACNGT 3 cut(s) 55, 598, 721
Bst6I CTCTTC 2 cut(s) 511, 697
BstAUI TGTACA 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 440, 569
BstDEI CTNAG 1 cut(s) 861
BstHHI GCGC 1 cut(s) 643
BstKTI GATC 7 cut(s) 101, 226, 319, 529, 614, 759, 792
BstMAI GTCTC 2 cut(s) 131, 267
BstMBI GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNI CCWGG 5 cut(s) 237, 301, 314, 513, 834
BstNSI RCATGY 1 cut(s) 413
BstPAI GACNNNNGTC 1 cut(s) 308
BstSCI CCNGG 7 cut(s) 235, 299, 312, 388, 389, 511, 832
BstV1I GCAGC 4 cut(s) 59, 241, 763, 826
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 3 cut(s) 316, 526, 789
BstYI RGATCY 3 cut(s) 316, 526, 789
BsuRI GGCC 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 4 cut(s) 272, 273, 474, 706
Cac8I GCNNGC 2 cut(s) 440, 569
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 643
Cfr13I GGNCC 2 cut(s) 188, 734
Cfr9I CCCGGG 1 cut(s) 389
Csp6I GTAC 3 cut(s) 425, 492, 850
CviAII CATG 6 cut(s) 145, 154, 308, 329, 410, 760
CviJI RGCY 8 cut(s) 220, 394, 469, 511, 521, 567, 754, 807
CviKI_1 RGCY 8 cut(s) 220, 394, 469, 511, 521, 567, 754, 807
CviQI GTAC 3 cut(s) 425, 492, 850
DdeI CTNAG 1 cut(s) 861
DpnI GATC 7 cut(s) 100, 225, 318, 528, 613, 758, 791
DpnII GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 511, 697
EarI CTCTTC 2 cut(s) 511, 697
EciI GGCGGA 1 cut(s) 726
Eco31I GGTCTC 1 cut(s) 267
Eco32I GATATC 2 cut(s) 151, 211
Eco47I GGWCC 2 cut(s) 188, 734
Eco88I CYCGRG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 188
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 5 cut(s) 235, 299, 312, 511, 832
EcoRV GATATC 2 cut(s) 151, 211
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 6 cut(s) 148, 157, 311, 332, 413, 763
FalI AAGNNNNNCTT 2 cut(s) 698, 730
FatI CATG 6 cut(s) 144, 153, 307, 328, 409, 759
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 48, 255, 752, 840
Fsp4HI GCNGC 4 cut(s) 48, 255, 752, 840
FspBI CTAG 3 cut(s) 183, 551, 591
GlaI GCGC 1 cut(s) 642
GluI GCNGC 4 cut(s) 48, 255, 752, 840
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 567
HapII CCGG 2 cut(s) 390, 765
HhaI GCGC 1 cut(s) 643
Hin1II CATG 6 cut(s) 148, 157, 311, 332, 413, 763
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HincII GTYRAC 2 cut(s) 244, 780
HindII GTYRAC 2 cut(s) 244, 780
HinfI GANTC 3 cut(s) 8, 109, 304
HpaII CCGG 2 cut(s) 390, 765
HphI GGTGA 3 cut(s) 491, 606, 811
Hpy166II GTNNAC 3 cut(s) 244, 385, 780
Hpy188I TCNGA 3 cut(s) 22, 228, 375
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 3 cut(s) 244, 385, 780
HpyAV CCTTC 2 cut(s) 288, 724
HpyCH4III ACNGT 3 cut(s) 55, 598, 721
HpyCH4V TGCA 6 cut(s) 119, 407, 438, 746, 770, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 861
Hsp92II CATG 6 cut(s) 148, 157, 311, 332, 413, 763
HspAI GCGC 1 cut(s) 641
Kzo9I GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
LguI GCTCTTC 1 cut(s) 511
Lsp1109I GCAGC 4 cut(s) 59, 241, 763, 826
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 183, 551, 591
MaeIII GTNAC 5 cut(s) 58, 359, 446, 479, 598
MalI GATC 7 cut(s) 100, 225, 318, 528, 613, 758, 791
MboI GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
MboII GAAGA 8 cut(s) 6, 171, 302, 344, 528, 572, 684, 718
MflI RGATCY 3 cut(s) 316, 526, 789
MlsI TGGCCA 1 cut(s) 567
MluCI AATT 5 cut(s) 34, 81, 123, 341, 729
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 9 cut(s) 28, 179, 224, 381, 443, 661, 664, 819, 839
Mox20I TGGCCA 1 cut(s) 567
MroXI GAANNNNTTC 1 cut(s) 713
MscI TGGCCA 1 cut(s) 567
MseI TTAA 4 cut(s) 33, 531, 636, 880
MslI CAYNNNNRTG 2 cut(s) 576, 605
Msp20I TGGCCA 1 cut(s) 567
MspI CCGG 2 cut(s) 390, 765
MspR9I CCNGG 7 cut(s) 237, 301, 314, 390, 391, 513, 834
MvaI CCWGG 5 cut(s) 237, 301, 314, 513, 834
MwoI GCNNNNNNNGC 1 cut(s) 413
NciI CCSGG 2 cut(s) 390, 391
NdeII GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
NlaIII CATG 6 cut(s) 148, 157, 311, 332, 413, 763
NlaIV GGNNCC 4 cut(s) 159, 190, 318, 791
NmuCI GTSAC 3 cut(s) 359, 479, 598
NspI RCATGY 1 cut(s) 413
OliI CACNNNNGTG 1 cut(s) 605
PciI ACATGT 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 713
PfeI GAWTC 2 cut(s) 8, 109
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 4 cut(s) 49, 256, 753, 841
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 188
PscI ACATGT 1 cut(s) 409
PshAI GACNNNNGTC 1 cut(s) 308
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 5 cut(s) 235, 299, 312, 511, 832
PspGI CCWGG 5 cut(s) 235, 299, 312, 511, 832
PspN4I GGNNCC 4 cut(s) 159, 190, 318, 791
PspPI GGNCC 2 cut(s) 188, 734
PspPPI RGGWCCY 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 3 cut(s) 316, 526, 789
RsaI GTAC 3 cut(s) 426, 493, 851
RsaNI GTAC 3 cut(s) 425, 492, 850
RseI CAYNNNNRTG 2 cut(s) 576, 605
SapI GCTCTTC 1 cut(s) 511
SaqAI TTAA 4 cut(s) 33, 531, 636, 880
SatI GCNGC 4 cut(s) 48, 255, 752, 840
Sau3AI GATC 7 cut(s) 98, 223, 316, 526, 611, 756, 789
Sau96I GGNCC 2 cut(s) 188, 734
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 7 cut(s) 237, 301, 314, 390, 391, 513, 834
SetI ASST 7 cut(s) 163, 339, 471, 523, 629, 729, 862
SfaNI GCATC 1 cut(s) 394
SinI GGWCC 2 cut(s) 188, 734
SmaI CCCGGG 1 cut(s) 391
SmiMI CAYNNNNRTG 2 cut(s) 576, 605
SmlI CTYRAG 2 cut(s) 215, 655
SmoI CTYRAG 2 cut(s) 215, 655
Sse9I AATT 5 cut(s) 34, 81, 123, 341, 729
SsiI CCGC 2 cut(s) 231, 737
SspMI CTAG 3 cut(s) 183, 551, 591
StyD4I CCNGG 7 cut(s) 235, 299, 312, 388, 389, 511, 832
TaaI ACNGT 3 cut(s) 55, 598, 721
TasI AATT 5 cut(s) 34, 81, 123, 341, 729
TatI WGTACW 2 cut(s) 424, 491
TfiI GAWTC 2 cut(s) 8, 109
Tru1I TTAA 4 cut(s) 33, 531, 636, 880
Tru9I TTAA 4 cut(s) 33, 531, 636, 880
TscAI CASTG 4 cut(s) 273, 279, 481, 706
TseFI GTSAC 3 cut(s) 359, 479, 598
TseI GCWGC 4 cut(s) 47, 254, 751, 839
Tsp45I GTSAC 3 cut(s) 359, 479, 598
TspDTI ATGAA 2 cut(s) 101, 345
TspGWI ACGGA 1 cut(s) 155
TspMI CCCGGG 1 cut(s) 389
TspRI CASTG 4 cut(s) 273, 279, 481, 706
VpaK11BI GGWCC 2 cut(s) 188, 734
XapI RAATTY 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 182
XceI RCATGY 1 cut(s) 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 519
XmaI CCCGGG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 713
XspI CTAG 3 cut(s) 183, 551, 591
ZrmI AGTACT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.