Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008171

Physical Location & Seq

Genomic Coordinates Reverse (-)

51782201 .. 51786848

Gene Structure 4648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20464

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGAATTTGAAGCTCACCGCAGAGAAATTGGTGAAGGAGAAAGCTTCTGTGAAAACAGATTTGGAAATGGCGGTGAAGTGGGGATGTGATTTGCAGAGTGAGCATGAGCGTTATTTAACTGAAGAGGCATTTAGTGGATGCCCAGTAATTGTCAGGGACTATCCAAAGGAGATAAAAGCATTCTATATGCGGCAAAATGATGATGGGAAGACTGTGGTAGCTATGGATATGTTGGTTCCCCGGGTTAGAGAGCTTATCGGTGGAAGCCAGAGAGAAGAGAGGCTTGAATATTTTAGAAAACTGGTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004816 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006421 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

104

Amino Acids

12.03

Weight (kDa)

6.6

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	20 - 98	1.2e-09	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008171)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330481 RchiOBHm_Chr1g0343121 RchiOBHm_Chr5g0006981 RchiOBHm_Chr7g0228441
rosa_laevigata	RLG00000009218 RLG00000013428 RLG00000023422 RLG00000028878
rosa_multiflora	Rmu_co8340297.1_g000001 Rmu_sc0027157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071520 Rroxscaffold_7G00192850
rosa_rugosa	Rorug05G0375200
rosa_samantha	Rh2CG409900 Rh2DG353000 Rh3BG332600 Rh3DG311700 Rh4DG241500 Rh5AG153900 Rh5AG364100 Rh6AG240500 Rh6BG135500 Rh7CG472600 Rh7DG441600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	21, 74, 193
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	13, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	16, 47, 224, 256
AluI	AGCT	4 cut(s)	16, 47, 224, 256
Ama87I	CYCGRG	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	7
AsuC2I	CCSGG	2 cut(s)	244, 245
AsuHPI	GGTGA	3 cut(s)	10, 46, 88
AvaI	CYCGRG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	218
BccI	CCATC	1 cut(s)	200
BcnI	CCSGG	2 cut(s)	244, 245
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	2 cut(s)	244, 245
BmeT110I	CYCGRG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	244, 245
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	244, 245
BsaJI	CCNNGG	2 cut(s)	242, 243
Bse1I	ACTGG	2 cut(s)	146, 309
BseDI	CCNNGG	2 cut(s)	242, 243
BseGI	GGATG	2 cut(s)	92, 146
BseNI	ACTGG	2 cut(s)	146, 309
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	243
BspACI	CCGC	3 cut(s)	21, 74, 193
BspLI	GGNNCC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	146, 309
BssECI	CCNNGG	2 cut(s)	242, 243
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	120, 273
BstF5I	GGATG	2 cut(s)	92, 146
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	242, 243
BstV2I	GAAGAC	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	92, 146
Cfr9I	CCCGGG	1 cut(s)	243
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	6 cut(s)	16, 47, 224, 256, 270, 286
CviKI_1	RGCY	6 cut(s)	16, 47, 224, 256, 270, 286
Eam1104I	CTCTTC	2 cut(s)	120, 273
EarI	CTCTTC	2 cut(s)	120, 273
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	243
FaeI	CATG	1 cut(s)	110
FaiI	YATR	5 cut(s)	108, 189, 191, 227, 233
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	99, 153
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	1 cut(s)	110
HindIII	AAGCTT	1 cut(s)	45
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	3 cut(s)	10, 46, 88
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	110
LpnPI	CCDG	5 cut(s)	142, 159, 257, 284, 290
LweI	GCATC	1 cut(s)	131
MboII	GAAGA	3 cut(s)	137, 223, 290
MluCI	AATT	3 cut(s)	7, 29, 150
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	121, 276
MseI	TTAA	1 cut(s)	119
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	244, 245
Mva1269I	GAATGC	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	2 cut(s)	244, 245
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	244, 245
SetI	ASST	4 cut(s)	18, 49, 226, 258
SfaNI	GCATC	1 cut(s)	131
SgeI	CNNG	8 cut(s)	119, 158, 169, 255, 256, 257, 283, 299
SmaI	CCCGGG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	7, 29, 150
SsiI	CCGC	3 cut(s)	21, 74, 193
SspI	AATATT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	242, 243
TaaI	ACNGT	1 cut(s)	217
TasI	AATT	3 cut(s)	7, 29, 150
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TspMI	CCCGGG	1 cut(s)	243
XapI	RAATTY	1 cut(s)	7
XmaI	CCCGGG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.