Exocyst complex component Sec6
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330481 RchiOBHm_Chr1g0343121 RchiOBHm_Chr5g0006981 RchiOBHm_Chr7g0228441 |
| rosa_laevigata | RLG00000009218 RLG00000013428 RLG00000023422 RLG00000028878 |
| rosa_multiflora | Rmu_co8340297.1_g000001 Rmu_sc0027157.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00071520 Rroxscaffold_7G00192850 |
| rosa_rugosa | Rorug05G0375200 |
| rosa_samantha | Rh2CG409900 Rh2DG353000 Rh3BG332600 Rh3DG311700 Rh4DG241500 Rh5AG153900 Rh5AG364100 Rh6AG240500 Rh6BG135500 Rh7CG472600 Rh7DG441600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 2 cut(s) | 36, 177 |
| AflIII | ACRYGT | 1 cut(s) | 231 |
| AgsI | TTSAA | 4 cut(s) | 116, 163, 259, 342 |
| AluBI | AGCT | 3 cut(s) | 20, 68, 136 |
| AluI | AGCT | 3 cut(s) | 20, 68, 136 |
| AoxI | GGCC | 1 cut(s) | 3 |
| AspLEI | GCGC | 1 cut(s) | 78 |
| AspS9I | GGNCC | 1 cut(s) | 205 |
| AvaII | GGWCC | 1 cut(s) | 205 |
| BccI | CCATC | 2 cut(s) | 39, 298 |
| BciVI | GTATCC | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 150 |
| BfuI | GTATCC | 1 cut(s) | 37 |
| Bme18I | GGWCC | 1 cut(s) | 205 |
| BmgT120I | GGNCC | 1 cut(s) | 205 |
| Bpu10I | CCTNAGC | 1 cut(s) | 21 |
| BsaBI | GATNNNNATC | 1 cut(s) | 289 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 36, 177 |
| Bse3DI | GCAATG | 2 cut(s) | 151, 236 |
| Bse8I | GATNNNNATC | 1 cut(s) | 289 |
| BseGI | GGATG | 1 cut(s) | 268 |
| BseJI | GATNNNNATC | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 36, 177 |
| BseMI | GCAATG | 2 cut(s) | 151, 236 |
| BseMII | CTCAG | 2 cut(s) | 35, 86 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BslFI | GGGAC | 1 cut(s) | 254 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 36, 177 |
| BsmFI | GGGAC | 1 cut(s) | 254 |
| BsmI | GAATGC | 1 cut(s) | 104 |
| BsnI | GGCC | 1 cut(s) | 5 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 2 cut(s) | 34, 85 |
| BsrDI | GCAATG | 2 cut(s) | 151, 236 |
| BstDEI | CTNAG | 3 cut(s) | 21, 72, 140 |
| BstF5I | GGATG | 1 cut(s) | 268 |
| BstHHI | GCGC | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 286 |
| BstNSI | RCATGY | 2 cut(s) | 228, 235 |
| BsuI | GTATCC | 1 cut(s) | 37 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtsCI | GGATG | 1 cut(s) | 268 |
| BtsIMutI | CAGTG | 1 cut(s) | 332 |
| CfoI | GCGC | 1 cut(s) | 78 |
| Cfr13I | GGNCC | 1 cut(s) | 205 |
| CviAII | CATG | 4 cut(s) | 42, 122, 225, 232 |
| CviJI | RGCY | 7 cut(s) | 5, 20, 68, 88, 136, 280, 310 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 20, 68, 88, 136, 280, 310 |
| DdeI | CTNAG | 3 cut(s) | 21, 72, 140 |
| Eco47I | GGWCC | 1 cut(s) | 205 |
| FaeI | CATG | 4 cut(s) | 45, 125, 228, 235 |
| FaqI | GGGAC | 1 cut(s) | 254 |
| FatI | CATG | 4 cut(s) | 41, 121, 224, 231 |
| FokI | GGATG | 1 cut(s) | 275 |
| FspBI | CTAG | 1 cut(s) | 150 |
| GlaI | GCGC | 1 cut(s) | 77 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HhaI | GCGC | 1 cut(s) | 78 |
| Hin1II | CATG | 4 cut(s) | 45, 125, 228, 235 |
| Hin6I | GCGC | 1 cut(s) | 76 |
| HinP1I | GCGC | 1 cut(s) | 76 |
| HindIII | AAGCTT | 1 cut(s) | 134 |
| Hpy188I | TCNGA | 1 cut(s) | 315 |
| Hpy188III | TCNNGA | 2 cut(s) | 95, 342 |
| HpyAV | CCTTC | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 1 cut(s) | 193 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 286 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 72, 140 |
| Hsp92II | CATG | 4 cut(s) | 45, 125, 228, 235 |
| HspAI | GCGC | 1 cut(s) | 76 |
| LpnPI | CCDG | 2 cut(s) | 8, 179 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MaeIII | GTNAC | 2 cut(s) | 180, 227 |
| MboII | GAAGA | 1 cut(s) | 226 |
| MfeI | CAATTG | 1 cut(s) | 188 |
| MluCI | AATT | 2 cut(s) | 188, 200 |
| MnlI | CCTC | 1 cut(s) | 321 |
| MseI | TTAA | 2 cut(s) | 12, 173 |
| MunI | CAATTG | 1 cut(s) | 188 |
| Mva1269I | GAATGC | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 286 |
| NlaIII | CATG | 4 cut(s) | 45, 125, 228, 235 |
| NspI | RCATGY | 2 cut(s) | 228, 235 |
| PciI | ACATGT | 1 cut(s) | 231 |
| PctI | GAATGC | 1 cut(s) | 104 |
| PscI | ACATGT | 1 cut(s) | 231 |
| PspPI | GGNCC | 1 cut(s) | 205 |
| SaqAI | TTAA | 2 cut(s) | 12, 173 |
| Sau96I | GGNCC | 1 cut(s) | 205 |
| SetI | ASST | 6 cut(s) | 22, 27, 41, 70, 138, 173 |
| SinI | GGWCC | 1 cut(s) | 205 |
| Sse9I | AATT | 2 cut(s) | 188, 200 |
| SspMI | CTAG | 1 cut(s) | 150 |
| TasI | AATT | 2 cut(s) | 188, 200 |
| Tru1I | TTAA | 2 cut(s) | 12, 173 |
| Tru9I | TTAA | 2 cut(s) | 12, 173 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TspDTI | ATGAA | 1 cut(s) | 279 |
| TspRI | CASTG | 1 cut(s) | 339 |
| VpaK11BI | GGWCC | 1 cut(s) | 205 |
| XceI | RCATGY | 2 cut(s) | 228, 235 |
| XspI | CTAG | 1 cut(s) | 150 |