NHL domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330481 RchiOBHm_Chr1g0343121 RchiOBHm_Chr5g0006981 RchiOBHm_Chr7g0228441 |
| rosa_laevigata | RLG00000009218 RLG00000013428 RLG00000023422 RLG00000028878 |
| rosa_multiflora | Rmu_co8340297.1_g000001 Rmu_sc0027157.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00071520 Rroxscaffold_7G00192850 |
| rosa_rugosa | Rorug05G0375200 |
| rosa_samantha | Rh2CG409900 Rh2DG353000 Rh3BG332600 Rh3DG311700 Rh4DG241500 Rh5AG153900 Rh5AG364100 Rh6AG240500 Rh6BG135500 Rh7CG472600 Rh7DG441600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 246 |
| AcsI | RAATTY | 1 cut(s) | 264 |
| AflIII | ACRYGT | 2 cut(s) | 66, 244 |
| AgsI | TTSAA | 4 cut(s) | 94, 263, 285, 330 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 198, 230 |
| AluBI | AGCT | 1 cut(s) | 233 |
| AluI | AGCT | 1 cut(s) | 233 |
| ApeKI | GCWGC | 1 cut(s) | 316 |
| ApoI | RAATTY | 1 cut(s) | 264 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 210 |
| AspS9I | GGNCC | 1 cut(s) | 40 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BbvI | GCAGC | 1 cut(s) | 328 |
| BccI | CCATC | 1 cut(s) | 133 |
| BfaI | CTAG | 1 cut(s) | 117 |
| BisI | GCNGC | 1 cut(s) | 317 |
| BlsI | GCNGC | 1 cut(s) | 318 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmgT120I | GGNCC | 1 cut(s) | 40 |
| BmsI | GCATC | 1 cut(s) | 261 |
| BsaBI | GATNNNNATC | 1 cut(s) | 124 |
| Bse8I | GATNNNNATC | 1 cut(s) | 124 |
| BseGI | GGATG | 2 cut(s) | 102, 190 |
| BseJI | GATNNNNATC | 1 cut(s) | 124 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseXI | GCAGC | 1 cut(s) | 328 |
| BsgI | GTGCAG | 1 cut(s) | 29 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BsmI | GAATGC | 2 cut(s) | 280, 325 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BstC8I | GCNNGC | 1 cut(s) | 305 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstF5I | GGATG | 2 cut(s) | 102, 190 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 196, 313, 322 |
| BstNSI | RCATGY | 2 cut(s) | 63, 70 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV1I | GCAGC | 1 cut(s) | 328 |
| BtsCI | GGATG | 2 cut(s) | 102, 190 |
| BtsIMutI | CAGTG | 1 cut(s) | 167 |
| Cac8I | GCNNGC | 1 cut(s) | 305 |
| Cfr13I | GGNCC | 1 cut(s) | 40 |
| CviAII | CATG | 3 cut(s) | 60, 67, 340 |
| CviJI | RGCY | 6 cut(s) | 115, 132, 145, 210, 233, 303 |
| CviKI_1 | RGCY | 6 cut(s) | 115, 132, 145, 210, 233, 303 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DraI | TTTAAA | 1 cut(s) | 346 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| FaeI | CATG | 3 cut(s) | 63, 70, 343 |
| FaiI | YATR | 7 cut(s) | 61, 68, 81, 83, 136, 321, 341 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 198, 230 |
| FatI | CATG | 3 cut(s) | 59, 66, 339 |
| Fnu4HI | GCNGC | 1 cut(s) | 317 |
| FokI | GGATG | 2 cut(s) | 89, 197 |
| Fsp4HI | GCNGC | 1 cut(s) | 317 |
| FspBI | CTAG | 1 cut(s) | 117 |
| GluI | GCNGC | 1 cut(s) | 317 |
| Hin1II | CATG | 3 cut(s) | 63, 70, 343 |
| HincII | GTYRAC | 1 cut(s) | 242 |
| HindII | GTYRAC | 1 cut(s) | 242 |
| HindIII | AAGCTT | 1 cut(s) | 231 |
| HinfI | GANTC | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 1 cut(s) | 150 |
| Hpy8I | GTNNAC | 1 cut(s) | 242 |
| Hpy99I | CGWCG | 1 cut(s) | 161 |
| HpyAV | CCTTC | 2 cut(s) | 88, 200 |
| HpyCH4V | TGCA | 3 cut(s) | 10, 28, 252 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 196, 313, 322 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| Hsp92II | CATG | 3 cut(s) | 63, 70, 343 |
| LpnPI | CCDG | 3 cut(s) | 14, 176, 317 |
| Lsp1109I | GCAGC | 1 cut(s) | 328 |
| LweI | GCATC | 1 cut(s) | 261 |
| MaeI | CTAG | 1 cut(s) | 117 |
| MaeIII | GTNAC | 2 cut(s) | 15, 62 |
| MboII | GAAGA | 2 cut(s) | 61, 215 |
| MfeI | CAATTG | 1 cut(s) | 330 |
| MluCI | AATT | 2 cut(s) | 264, 330 |
| MluI | ACGCGT | 1 cut(s) | 244 |
| MmeI | TCCRAC | 1 cut(s) | 200 |
| MnlI | CCTC | 3 cut(s) | 87, 156, 175 |
| MroXI | GAANNNNTTC | 1 cut(s) | 210 |
| MseI | TTAA | 2 cut(s) | 345, 353 |
| MssI | GTTTAAAC | 1 cut(s) | 346 |
| MunI | CAATTG | 1 cut(s) | 330 |
| Mva1269I | GAATGC | 2 cut(s) | 280, 325 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 196, 313, 322 |
| NlaIII | CATG | 3 cut(s) | 63, 70, 343 |
| NspI | RCATGY | 2 cut(s) | 63, 70 |
| PciI | ACATGT | 1 cut(s) | 66 |
| PctI | GAATGC | 2 cut(s) | 280, 325 |
| PdmI | GAANNNNTTC | 1 cut(s) | 210 |
| PfeI | GAWTC | 1 cut(s) | 172 |
| PkrI | GCNGC | 1 cut(s) | 318 |
| PmeI | GTTTAAAC | 1 cut(s) | 346 |
| PscI | ACATGT | 1 cut(s) | 66 |
| PspPI | GGNCC | 1 cut(s) | 40 |
| SaqAI | TTAA | 2 cut(s) | 345, 353 |
| SatI | GCNGC | 1 cut(s) | 317 |
| Sau96I | GGNCC | 1 cut(s) | 40 |
| SetI | ASST | 2 cut(s) | 79, 235 |
| SfaNI | GCATC | 1 cut(s) | 261 |
| SinI | GGWCC | 1 cut(s) | 40 |
| Sse9I | AATT | 2 cut(s) | 264, 330 |
| SspMI | CTAG | 1 cut(s) | 117 |
| TasI | AATT | 2 cut(s) | 264, 330 |
| TfiI | GAWTC | 1 cut(s) | 172 |
| Tru1I | TTAA | 2 cut(s) | 345, 353 |
| Tru9I | TTAA | 2 cut(s) | 345, 353 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TseI | GCWGC | 1 cut(s) | 316 |
| TspDTI | ATGAA | 1 cut(s) | 328 |
| TspGWI | ACGGA | 1 cut(s) | 145 |
| TspRI | CASTG | 1 cut(s) | 174 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XapI | RAATTY | 1 cut(s) | 264 |
| XceI | RCATGY | 2 cut(s) | 63, 70 |
| XmnI | GAANNNNTTC | 1 cut(s) | 210 |
| XspI | CTAG | 1 cut(s) | 117 |