Rroxscaffold_7G00192850

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008171
Physical Location & Seq
Forward (+)
34204521 .. 34208199
3679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192850.1

Sequence Viewer

Length: 381 bp
ATGATCGCTATAAAACTGAGCACTCAACGAGGGTCGGCGCAGATACCCCCATCCCCTTGTTTTCCTAGGGAGATCTTAGCATGGAATTGTCGCGGTATCAATAATGACATCGCAGCGCAAGCTTTGAAGAGGCTATGTCAAGAATGCCAAACTTTGATTGAAAACCATGATAAGATAAAGCTTCTCGGCAATGCGAGGAATAACTTGAATACAACCTTAAAGGGGTTACAACAATTGCGGGGGGAATTGGACCAAGTGAAGATGAGAGCATGTAACATGTCATTACCTTTTATATTTCTTTTGAAGGATGAAGTCCCAACCAAGCCAAGATTGCCATCAAGTCCATACCAAAAGCCTCGAAATCAGTCCCGCCACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec6

Protein Analysis

126

Amino Acids

14.36

Weight (kDa)

10.05

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 93, 238, 370, 376
AfiI CCNNNNNNNGG 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 4 cut(s) 127, 161, 208, 304
AluBI AGCT 2 cut(s) 122, 181
AluI AGCT 2 cut(s) 122, 181
Alw21I GWGCWC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 65
AspLEI GCGC 2 cut(s) 40, 118
AspS9I GGNCC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 250
AvrII CCTAGG 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 58, 343
BfaI CTAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 72
BisI GCNGC 1 cut(s) 114
BlnI CCTAGG 1 cut(s) 65
BlsI GCNGC 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 50, 313
BseJI GATNNNNATC 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 8
BseXI GCAGC 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 23
BslFI GGGAC 2 cut(s) 299, 352
BslI CCNNNNNNNGG 1 cut(s) 222
BsmFI GGGAC 2 cut(s) 299, 352
BsmI GAATGC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 3, 72
BspACI CCGC 4 cut(s) 93, 238, 370, 376
BspCNI CTCAG 1 cut(s) 9
BspFNI CGCG 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 3, 72
BssT1I CCWWGG 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 17, 76
BstF5I GGATG 2 cut(s) 50, 313
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 40, 118
BstKTI GATC 2 cut(s) 6, 75
BstMBI GATC 2 cut(s) 3, 72
BstMWI GCNNNNNNNGC 2 cut(s) 119, 331
BstNSI RCATGY 2 cut(s) 273, 280
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 50, 313
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 40, 118
Cfr13I GGNCC 1 cut(s) 250
CviAII CATG 4 cut(s) 81, 167, 270, 277
CviJI RGCY 5 cut(s) 122, 133, 181, 325, 355
CviKI_1 RGCY 5 cut(s) 122, 133, 181, 325, 355
DdeI CTNAG 2 cut(s) 17, 76
DpnI GATC 2 cut(s) 5, 74
DpnII GATC 2 cut(s) 3, 72
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 4 cut(s) 84, 170, 273, 280
FaiI YATR 8 cut(s) 11, 82, 136, 168, 271, 278, 293, 346
FaqI GGGAC 2 cut(s) 299, 352
FatI CATG 4 cut(s) 80, 166, 269, 276
FauI CCCGC 2 cut(s) 231, 377
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 37, 320
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 66
GlaI GCGC 2 cut(s) 39, 117
GluI GCNGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 40, 118
Hin1II CATG 4 cut(s) 84, 170, 273, 280
Hin6I GCGC 2 cut(s) 38, 116
HinP1I GCGC 2 cut(s) 38, 116
HindIII AAGCTT 2 cut(s) 120, 179
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 331
HpyF3I CTNAG 2 cut(s) 17, 76
Hsp92II CATG 4 cut(s) 84, 170, 273, 280
HspAI GCGC 2 cut(s) 38, 116
Kzo9I GATC 2 cut(s) 3, 72
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 225, 272
MalI GATC 2 cut(s) 5, 74
MboI GATC 2 cut(s) 3, 72
MboII GAAGA 2 cut(s) 139, 271
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 3 cut(s) 85, 233, 245
MnlI CCTC 4 cut(s) 23, 123, 189, 366
MseI TTAA 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 378
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 149
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 119, 331
NdeII GATC 2 cut(s) 3, 72
NlaIII CATG 4 cut(s) 84, 170, 273, 280
NmeAIII GCCGAG 1 cut(s) 165
NspI RCATGY 2 cut(s) 273, 280
PciI ACATGT 1 cut(s) 276
PctI GAATGC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 115
PscI ACATGT 1 cut(s) 276
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 72
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 2 cut(s) 3, 72
Sau96I GGNCC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 23
SetI ASST 4 cut(s) 124, 183, 218, 289
SinI GGWCC 1 cut(s) 250
Sse9I AATT 3 cut(s) 85, 233, 245
SsiI CCGC 4 cut(s) 93, 238, 370, 376
SspMI CTAG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 65
TaqI TCGA 1 cut(s) 358
TasI AATT 3 cut(s) 85, 233, 245
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 250
XceI RCATGY 2 cut(s) 273, 280
XmaJI CCTAGG 1 cut(s) 65
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.