tRNA synthetases class II (D, K and N)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330481 RchiOBHm_Chr1g0343121 RchiOBHm_Chr5g0006981 RchiOBHm_Chr7g0228441 |
| rosa_laevigata | RLG00000009218 RLG00000013428 RLG00000023422 RLG00000028878 |
| rosa_multiflora | Rmu_co8340297.1_g000001 Rmu_sc0027157.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00071520 Rroxscaffold_7G00192850 |
| rosa_rugosa | Rorug05G0375200 |
| rosa_samantha | Rh2CG409900 Rh2DG353000 Rh3BG332600 Rh3DG311700 Rh4DG241500 Rh5AG153900 Rh5AG364100 Rh6AG240500 Rh6BG135500 Rh7CG472600 Rh7DG441600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 4 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 59 |
| AgsI | TTSAA | 2 cut(s) | 101, 176 |
| AjnI | CCWGG | 1 cut(s) | 54 |
| AluBI | AGCT | 2 cut(s) | 35, 67 |
| AluI | AGCT | 2 cut(s) | 35, 67 |
| BbsI | GAAGAC | 1 cut(s) | 29 |
| BccI | CCATC | 1 cut(s) | 11 |
| BciT130I | CCWGG | 1 cut(s) | 56 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| Bme1390I | CCNGG | 1 cut(s) | 56 |
| BmrFI | CCNGG | 1 cut(s) | 56 |
| BpiI | GAAGAC | 1 cut(s) | 29 |
| BsaJI | CCNNGG | 2 cut(s) | 54, 144 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 59 |
| BseBI | CCWGG | 1 cut(s) | 56 |
| BseDI | CCNNGG | 2 cut(s) | 54, 144 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 59 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 59 |
| Bsp19I | CCATGG | 1 cut(s) | 144 |
| BspACI | CCGC | 1 cut(s) | 4 |
| BssECI | CCNNGG | 2 cut(s) | 54, 144 |
| BssT1I | CCWWGG | 1 cut(s) | 144 |
| Bst2UI | CCWGG | 1 cut(s) | 56 |
| Bst4CI | ACNGT | 1 cut(s) | 28 |
| Bst6I | CTCTTC | 1 cut(s) | 84 |
| BstDSI | CCRYGG | 1 cut(s) | 144 |
| BstNI | CCWGG | 1 cut(s) | 56 |
| BstSCI | CCNGG | 1 cut(s) | 54 |
| BstV2I | GAAGAC | 1 cut(s) | 29 |
| BtgI | CCRYGG | 1 cut(s) | 144 |
| CviAII | CATG | 1 cut(s) | 145 |
| CviJI | RGCY | 4 cut(s) | 35, 67, 81, 97 |
| CviKI_1 | RGCY | 4 cut(s) | 35, 67, 81, 97 |
| Eam1104I | CTCTTC | 1 cut(s) | 84 |
| EarI | CTCTTC | 1 cut(s) | 84 |
| Eco130I | CCWWGG | 1 cut(s) | 144 |
| EcoRII | CCWGG | 1 cut(s) | 54 |
| EcoT14I | CCWWGG | 1 cut(s) | 144 |
| ErhI | CCWWGG | 1 cut(s) | 144 |
| FaeI | CATG | 1 cut(s) | 148 |
| FaiI | YATR | 3 cut(s) | 38, 44, 146 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 81, 113 |
| FatI | CATG | 1 cut(s) | 144 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 5 |
| Hin1II | CATG | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 1 cut(s) | 183 |
| HpyCH4III | ACNGT | 1 cut(s) | 28 |
| Hsp92II | CATG | 1 cut(s) | 148 |
| LpnPI | CCDG | 3 cut(s) | 41, 68, 95 |
| MboII | GAAGA | 4 cut(s) | 34, 101, 149, 152 |
| MluCI | AATT | 1 cut(s) | 130 |
| MmeI | TCCRAC | 1 cut(s) | 40 |
| MnlI | CCTC | 2 cut(s) | 87, 137 |
| MspR9I | CCNGG | 1 cut(s) | 56 |
| MvaI | CCWGG | 1 cut(s) | 56 |
| NcoI | CCATGG | 1 cut(s) | 144 |
| NlaIII | CATG | 1 cut(s) | 148 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| Psp6I | CCWGG | 1 cut(s) | 54 |
| PspGI | CCWGG | 1 cut(s) | 54 |
| SatI | GCNGC | 1 cut(s) | 5 |
| ScrFI | CCNGG | 1 cut(s) | 56 |
| SetI | ASST | 3 cut(s) | 37, 60, 69 |
| SgeI | CNNG | 5 cut(s) | 67, 68, 94, 110, 157 |
| Sse9I | AATT | 1 cut(s) | 130 |
| SsiI | CCGC | 1 cut(s) | 4 |
| SspI | AATATT | 1 cut(s) | 104 |
| StyD4I | CCNGG | 1 cut(s) | 54 |
| StyI | CCWWGG | 1 cut(s) | 144 |
| TaaI | ACNGT | 1 cut(s) | 28 |
| TasI | AATT | 1 cut(s) | 130 |
| TauI | GCSGC | 1 cut(s) | 7 |