RchiOBHm_Chr7g0231261

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013496
Physical Location & Seq
Forward (+)
54842463 .. 54848111
5649 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20724

Sequence Viewer

Length: 1053 bp
ATGGATCTGTGGTCCGTTCACGTTAAGAACAACGTCACCAGAGCGGCCCCCTTTCTGCCCAGAAACTCCTTCTCCGAGAAACCCATTTCCTGGAACTGCGGAAAGCGCAGGCCTTTGTGGCTCCGACTTGAAGATGGTGGGAGGGTGTTCGACGTTCGGGACTTGAATTCGAAGCCGCGCAGGGATGCTTTGGTGGTCAGAGCCATGGGCAAGAAGAACAACAATCAGGGCAATTCCTCCAACTCTTCTTCTTCCTCGGGAAATGATGACCACTCTATTCCAGAAGGAGATGGTGCAAAAGAAAACAACTCTGAAAAAAGCAAAGACACTTCTTCCCAGAAAAGTTATCATACAAATTTGGATTGGAGAGAGGTCAGAGCAATGTTTATTCGCAGGGAGCAGGCTGAATCTGATCCTCAGTACCAGTCGAAACCTCTTGGCGAGAAGTGGGCTCATCCCCTTGTAGTACCTGAGACAGGCTGTATCCTTGTTGCAACAGAAAAGCTTGACGGAGTGCGCACCTTTGAAAGGACTGTTGTTCTCCTCCTCCGATCAGGAAACAGACACCCAGAAGAGGGACCATTTGGTGTTGTTATCAACAGGCCACTACACAAAAAGATTAAACACATGAGACCCACAAATCTTGATCTTGCAACCACATTCTCTGATTGCTCTCTGCATTTTGGTGGGCCTCTAGAGGCAAGCATGTTCTTGTTGAAAACAGGGGGAAGGTCAAAGCTTCCCGGGTTTGAAGAGGTGATCCCTGGTCTTTGTTTTGGTGCCCGTAACAGTCTGGATGAAGCTGCTGGTCTAGTGAAGAAAGGGCTTCTTAAGCCTCAAGATTTCAGATTTTTTGTTGGCTATGCAGGGTGGCAGCTGGACCAGTTGACAGAGGAGATTGAATCCGATTATTGGTATGTGGCTGCTTGCAGCCCTAATTTGATATATGGAGCTTCATCAGATTCTTCGTCAGAAAGTTTGTGGGAGGAAATCCTGCAGCTAATGGGTGGCCAGTATTCTGAATTGAGTCGAAAGCCTAAGCAAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

350

Amino Acids

39.29

Weight (kDa)

8.18

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 174 - 336 7.9e-31 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33780
fragaria_vesca FvH4_5g33090
malus_domestica MD08G1215000.v1.1 MD15G1398000.v1.1
prunus_persica Prupe.1G546400_v2.0.a1
pyrus_communis pycom08g18590 pycom15g35770
rosa_chinensis RchiOBHm_Chr7g0231261
rosa_laevigata RLG00000001423
rosa_multiflora Rmu_sc0003396.1_g000004
rosa_roxburghii Rroxscaffold_3G00229370
rosa_rugosa Rorug07G0265600 Rorug07G0265600
rosa_samantha Rh7AG419300 Rh7BG394500 Rh7CG439000 Rh7DG412900
rosa_wichuraiana Rw7G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 44
AccII CGCG 1 cut(s) 178
AciI CCGC 3 cut(s) 44, 99, 176
AclWI GGATC 3 cut(s) 12, 407, 754
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 2 cut(s) 166, 355
AfaI GTAC 2 cut(s) 422, 468
AfiI CCNNNNNNNGG 6 cut(s) 90, 476, 528, 574, 575, 912
AflII CTTAAG 1 cut(s) 830
AgsI TTSAA 6 cut(s) 131, 166, 527, 718, 752, 902
AjnI CCWGG 2 cut(s) 89, 763
AluBI AGCT 6 cut(s) 505, 739, 803, 877, 953, 1000
AluI AGCT 6 cut(s) 505, 739, 803, 877, 953, 1000
Alw26I GTCTC 2 cut(s) 467, 625
AlwI GGATC 3 cut(s) 12, 407, 754
Ama87I CYCGRG 2 cut(s) 256, 743
AoxI GGCC 5 cut(s) 45, 110, 602, 689, 1009
ApeKI GCWGC 5 cut(s) 803, 874, 923, 930, 997
ApoI RAATTY 2 cut(s) 166, 355
AspLEI GCGC 3 cut(s) 108, 180, 519
AspS9I GGNCC 5 cut(s) 12, 46, 578, 689, 880
AsuC2I CCSGG 2 cut(s) 744, 745
AsuHPI GGTGA 2 cut(s) 28, 769
AsuII TTCGAA 1 cut(s) 170
AvaI CYCGRG 2 cut(s) 256, 743
AvaII GGWCC 3 cut(s) 12, 578, 880
BaeGI GKGCMC 1 cut(s) 784
BalI TGGCCA 1 cut(s) 1011
BanI GGYRCC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 454
BbvI GCAGC 5 cut(s) 790, 886, 910, 942, 1009
BccI CCATC 2 cut(s) 128, 284
BciT130I CCWGG 2 cut(s) 91, 765
BciVI GTATCC 1 cut(s) 494
BcnI CCSGG 2 cut(s) 744, 745
BcoDI GTCTC 2 cut(s) 467, 625
BfaI CTAG 2 cut(s) 695, 812
BfmI CTRYAG 1 cut(s) 995
BfrI CTTAAG 1 cut(s) 830
BfuI GTATCC 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 7 cut(s) 45, 176, 804, 875, 924, 931, 998
BlsI GCNGC 7 cut(s) 46, 177, 805, 876, 925, 932, 999
Bme1390I CCNGG 4 cut(s) 91, 744, 745, 765
Bme18I GGWCC 3 cut(s) 12, 578, 880
BmeT110I CYCGRG 2 cut(s) 256, 743
BmgT120I GGNCC 5 cut(s) 12, 46, 578, 689, 880
BmiI GGNNCC 4 cut(s) 48, 122, 579, 781
BmrFI CCNGG 4 cut(s) 91, 744, 745, 765
BmsI GCATC 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 1038
Bpu14I TTCGAA 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 822
BpuMI CCSGG 2 cut(s) 744, 745
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 4 cut(s) 204, 255, 743, 763
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 6 cut(s) 90, 476, 528, 574, 575, 912
Bse1I ACTGG 3 cut(s) 424, 883, 1012
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 91, 765
BseDI CCNNGG 4 cut(s) 204, 255, 743, 763
BseGI GGATG 3 cut(s) 190, 454, 802
BseLI CCNNNNNNNGG 6 cut(s) 90, 476, 528, 574, 575, 912
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 431, 462
BseNI ACTGG 3 cut(s) 424, 883, 1012
BseRI GAGGAG 3 cut(s) 533, 536, 908
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 5 cut(s) 790, 886, 910, 942, 1009
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 5 cut(s) 47, 112, 604, 691, 1011
BshNI GGYRCC 1 cut(s) 779
BsiHKCI CYCGRG 2 cut(s) 256, 743
BsiSI CCGG 1 cut(s) 744
BslFI GGGAC 2 cut(s) 173, 591
BslI CCNNNNNNNGG 6 cut(s) 90, 476, 528, 574, 575, 912
BsmAI GTCTC 2 cut(s) 467, 625
BsmFI GGGAC 2 cut(s) 173, 591
BsnI GGCC 5 cut(s) 47, 112, 604, 691, 1011
Bso31I GGTCTC 1 cut(s) 625
BsoBI CYCGRG 2 cut(s) 256, 743
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 454, 784
Bsp143I GATC 5 cut(s) 4, 412, 551, 646, 759
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 3 cut(s) 44, 99, 176
BspANI GGCC 5 cut(s) 47, 112, 604, 691, 1011
BspCNI CTCAG 2 cut(s) 430, 463
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 4 cut(s) 48, 122, 579, 781
BspMAI CTGCAG 1 cut(s) 999
BspPI GGATC 3 cut(s) 12, 407, 754
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 779
BspTI CTTAAG 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 3 cut(s) 424, 883, 1012
BssECI CCNNGG 4 cut(s) 204, 255, 743, 763
BssMI GATC 5 cut(s) 4, 412, 551, 646, 759
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 91, 765
Bst4CI ACNGT 2 cut(s) 535, 791
Bst6I CTCTTC 3 cut(s) 250, 567, 747
BstAFI CTTAAG 1 cut(s) 830
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 4 cut(s) 110, 402, 703, 928
BstDEI CTNAG 3 cut(s) 417, 471, 1038
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 2 cut(s) 474, 526
BstF5I GGATG 3 cut(s) 190, 454, 802
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 3 cut(s) 108, 180, 519
BstKTI GATC 5 cut(s) 7, 415, 554, 649, 762
BstMAI GTCTC 2 cut(s) 467, 625
BstMBI GATC 5 cut(s) 4, 412, 551, 646, 759
BstMWI GCNNNNNNNGC 3 cut(s) 105, 118, 832
BstNI CCWGG 2 cut(s) 91, 765
BstNSI RCATGY 1 cut(s) 709
BstSCI CCNGG 4 cut(s) 89, 742, 743, 763
BstSFI CTRYAG 1 cut(s) 995
BstSLI GKGCMC 1 cut(s) 784
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 5 cut(s) 790, 886, 910, 942, 1009
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 5 cut(s) 47, 112, 604, 691, 1011
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 3 cut(s) 190, 454, 802
Cac8I GCNNGC 4 cut(s) 110, 402, 703, 928
CfoI GCGC 3 cut(s) 108, 180, 519
Cfr13I GGNCC 5 cut(s) 12, 46, 578, 689, 880
Cfr9I CCCGGG 1 cut(s) 743
Csp6I GTAC 2 cut(s) 421, 467
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 3 cut(s) 205, 628, 706
CviQI GTAC 2 cut(s) 421, 467
DdeI CTNAG 3 cut(s) 417, 471, 1038
DpnI GATC 5 cut(s) 6, 414, 553, 648, 761
DpnII GATC 5 cut(s) 4, 412, 551, 646, 759
EaeI YGGCCR 1 cut(s) 1009
Eam1104I CTCTTC 3 cut(s) 250, 567, 747
EarI CTCTTC 3 cut(s) 250, 567, 747
Eco130I CCWWGG 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 625
Eco47I GGWCC 3 cut(s) 12, 578, 880
Eco88I CYCGRG 2 cut(s) 256, 743
EcoNI CCTNNNNNAGG 2 cut(s) 474, 526
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 89, 763
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 208, 631, 709
FaiI YATR 9 cut(s) 206, 351, 629, 707, 864, 918, 946, 948, 1049
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 2 cut(s) 173, 591
FatI CATG 3 cut(s) 204, 627, 705
Fnu4HI GCNGC 7 cut(s) 45, 176, 804, 875, 924, 931, 998
FokI GGATG 3 cut(s) 197, 441, 809
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 7 cut(s) 45, 176, 804, 875, 924, 931, 998
FspAI RTGCGCAY 1 cut(s) 518
FspBI CTAG 2 cut(s) 695, 812
FspI TGCGCA 1 cut(s) 518
GlaI GCGC 3 cut(s) 107, 179, 518
GluI GCNGC 7 cut(s) 45, 176, 804, 875, 924, 931, 998
HaeIII GGCC 5 cut(s) 47, 112, 604, 691, 1011
HapII CCGG 1 cut(s) 744
HhaI GCGC 3 cut(s) 108, 180, 519
Hin1II CATG 3 cut(s) 208, 631, 709
Hin6I GCGC 3 cut(s) 106, 178, 517
HinP1I GCGC 3 cut(s) 106, 178, 517
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HindIII AAGCTT 2 cut(s) 503, 737
HinfI GANTC 4 cut(s) 407, 902, 962, 1027
HpaII CCGG 1 cut(s) 744
HphI GGTGA 2 cut(s) 28, 769
Hpy166II GTNNAC 2 cut(s) 19, 888
Hpy188III TCNNGA 8 cut(s) 158, 258, 281, 555, 644, 695, 794, 839
Hpy8I GTNNAC 2 cut(s) 19, 888
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 79, 278, 723
HpyCH4III ACNGT 2 cut(s) 535, 791
HpyCH4IV ACGT 3 cut(s) 21, 33, 153
HpyCH4V TGCA 7 cut(s) 296, 494, 653, 679, 866, 930, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 118, 832
HpyF3I CTNAG 3 cut(s) 417, 471, 1038
HpySE526I ACGT 3 cut(s) 21, 33, 153
Hsp92II CATG 3 cut(s) 208, 631, 709
HspAI GCGC 3 cut(s) 106, 178, 517
Kzo9I GATC 5 cut(s) 4, 412, 551, 646, 759
LmnI GCTCC 3 cut(s) 126, 397, 950
Lsp1109I GCAGC 5 cut(s) 790, 886, 910, 942, 1009
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 695, 812
MaeII ACGT 3 cut(s) 21, 33, 153
MaeIII GTNAC 2 cut(s) 34, 785
MalI GATC 5 cut(s) 6, 414, 553, 648, 761
MbiI CCGCTC 1 cut(s) 44
MboI GATC 5 cut(s) 4, 412, 551, 646, 759
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 454, 784
MlsI TGGCCA 1 cut(s) 1011
MluCI AATT 5 cut(s) 166, 232, 355, 937, 1022
MluNI TGGCCA 1 cut(s) 1011
MlyI GAGTC 1 cut(s) 1036
MmeI TCCRAC 2 cut(s) 148, 264
Mox20I TGGCCA 1 cut(s) 1011
MscI TGGCCA 1 cut(s) 1011
MseI TTAA 3 cut(s) 24, 621, 831
MslI CAYNNNNRTG 1 cut(s) 684
Msp20I TGGCCA 1 cut(s) 1011
MspA1I CMGCKG 1 cut(s) 877
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 1 cut(s) 744
MspR9I CCNGG 4 cut(s) 91, 744, 745, 765
MvaI CCWGG 2 cut(s) 91, 765
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 105, 118, 832
NciI CCSGG 2 cut(s) 744, 745
NcoI CCATGG 1 cut(s) 204
NdeII GATC 5 cut(s) 4, 412, 551, 646, 759
NlaIII CATG 3 cut(s) 208, 631, 709
NlaIV GGNNCC 4 cut(s) 48, 122, 579, 781
NmuCI GTSAC 1 cut(s) 34
NsbI TGCGCA 1 cut(s) 518
NspI RCATGY 1 cut(s) 709
NspV TTCGAA 1 cut(s) 170
PceI AGGCCT 1 cut(s) 112
PfeI GAWTC 3 cut(s) 407, 902, 962
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 7 cut(s) 46, 177, 805, 876, 925, 932, 999
PleI GAGTC 1 cut(s) 1035
PpsI GAGTC 1 cut(s) 1035
Psp6I CCWGG 2 cut(s) 89, 763
PspGI CCWGG 2 cut(s) 89, 763
PspN4I GGNNCC 4 cut(s) 48, 122, 579, 781
PspPI GGNCC 5 cut(s) 12, 46, 578, 689, 880
PstI CTGCAG 1 cut(s) 999
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 877
RsaI GTAC 2 cut(s) 422, 468
RsaNI GTAC 2 cut(s) 421, 467
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 3 cut(s) 24, 621, 831
SatI GCNGC 7 cut(s) 45, 176, 804, 875, 924, 931, 998
Sau3AI GATC 5 cut(s) 4, 412, 551, 646, 759
Sau96I GGNCC 5 cut(s) 12, 46, 578, 689, 880
SchI GAGTC 1 cut(s) 1036
ScrFI CCNGG 4 cut(s) 91, 744, 745, 765
SduI GDGCHC 2 cut(s) 454, 784
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 995
SfuI TTCGAA 1 cut(s) 170
SinI GGWCC 3 cut(s) 12, 578, 880
SmaI CCCGGG 1 cut(s) 745
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 2 cut(s) 830, 837
SmoI CTYRAG 2 cut(s) 830, 837
Sse9I AATT 5 cut(s) 166, 232, 355, 937, 1022
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 3 cut(s) 44, 99, 176
SspMI CTAG 2 cut(s) 695, 812
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 4 cut(s) 89, 742, 743, 763
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 535, 791
TaiI ACGT 3 cut(s) 24, 36, 156
TaqI TCGA 4 cut(s) 150, 170, 428, 1030
TasI AATT 5 cut(s) 166, 232, 355, 937, 1022
TauI GCSGC 2 cut(s) 47, 178
TfiI GAWTC 3 cut(s) 407, 902, 962
Tru1I TTAA 3 cut(s) 24, 621, 831
Tru9I TTAA 3 cut(s) 24, 621, 831
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 5 cut(s) 803, 874, 923, 930, 997
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 813, 945
TspGWI ACGGA 2 cut(s) 4, 525
TspMI CCCGGG 1 cut(s) 743
Van91I CCANNNNNTGG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 830
VpaK11BI GGWCC 3 cut(s) 12, 578, 880
XagI CCTNNNNNAGG 2 cut(s) 474, 526
XapI RAATTY 2 cut(s) 166, 355
XbaI TCTAGA 1 cut(s) 694
XceI RCATGY 1 cut(s) 709
XmaI CCCGGG 1 cut(s) 743
XspI CTAG 2 cut(s) 695, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.