Rorug07G0265600

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013496
Physical Location & Seq
Forward (+)
25091281 .. 25106076
14796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0265600.1

Sequence Viewer

Length: 972 bp
ATGCCCATCTCCGACGCGGGAACTGCTTCCAGGGTTCCGTTTGCTATTCCTTCTCTTCCAAGTCGCCAGGTTGCAACTGCCTGCAAATATTTGCCATTGAATTCTTATGGGAATTTGAGTACCCCAAAATGGGCTGCATCTCATTTGTCAAGAAATCTCAAACTTGTGGCAAGTTCGGCTTCCGGGGACGACACTTCGGTTGCCTTTGATGTGTCAATTCCTAGAGACTATGATGAACTCCTTGAACAAGCCAGTAAAGCAACTCAATTGGCTTTGAAGGATAACAAACAGTTGATGGAGATCGAGTTTCCTACTGCTGGACTTGACTCTGTACCAGGAGACGGTGAAGGAGGAATAGAAATGACTGGAAGTATACAGCTCATTCGAGAATTTTGTGACATCTTAATATCTCCAGAGAAAGCCACGCGGACCAGAATATTTTTTCCTGAGGCCAATGAAGTTGAATTTGCAAGGAAATCATCATTCGAAGGAGCGTCCTTCAAGCTGGACTATCTGACTAAGCCATCATTTTTCGAGGATTTTGGTTTTACTGAGAAAGTGAAAATGACGGACCGTGTGAAGCCAGAAGATGAACTATTCTTGGCTGCGTATCCATATTTTAATGTCTCCGAAATGCTTGTAGTCGAAGAGCTGTACAGAGAAGCTGTTGTGAACACTTCCAGAAAGCTAATTATTTTCAACGGAGAACTTGACCGAATAAGATCTGGGTATTATCCATCTTTCTTCTACCCAAAGCTCGCTGCACTTTTGAAGACCCTGTTTCCAAGTATGGAGACTGTATACTACATTCACAATTTTAAAGGACGCTCTGGAGGGACCCTTTTCAGGTGCTACCCAGGTCCATGGAAAGTCTTCAGAAAAGTGAGGAATAGATACATTTGTTTGCATCAGCAGGAAGCTATGCCATCTCTCAAGGAAGTTGCCTTGGAAATTCTTCCAGGTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

323

Amino Acids

36.38

Weight (kDa)

6.38

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 74 - 315 5.9e-43 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33780
fragaria_vesca FvH4_5g33090
malus_domestica MD08G1215000.v1.1 MD15G1398000.v1.1
prunus_persica Prupe.1G546400_v2.0.a1
pyrus_communis pycom08g18590 pycom15g35770
rosa_chinensis RchiOBHm_Chr7g0231261
rosa_laevigata RLG00000001423
rosa_multiflora Rmu_sc0003396.1_g000004
rosa_roxburghii Rroxscaffold_3G00229370
rosa_rugosa Rorug07G0265600 Rorug07G0265600
rosa_samantha Rh7AG419300 Rh7BG394500 Rh7CG439000 Rh7DG412900
rosa_wichuraiana Rw7G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 373, 801
AccII CGCG 2 cut(s) 17, 427
AciI CCGC 2 cut(s) 17, 427
AcsI RAATTY 5 cut(s) 100, 112, 389, 464, 951
AcuI CTGAAG 1 cut(s) 859
AfaI GTAC 3 cut(s) 121, 333, 656
AfiI CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 846
AgsI TTSAA 7 cut(s) 100, 245, 277, 464, 502, 700, 772
AjnI CCWGG 5 cut(s) 29, 66, 334, 856, 958
AluBI AGCT 7 cut(s) 379, 505, 652, 665, 688, 757, 920
AluI AGCT 7 cut(s) 379, 505, 652, 665, 688, 757, 920
Alw26I GTCTC 4 cut(s) 219, 333, 631, 788
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 3 cut(s) 134, 605, 761
ApoI RAATTY 5 cut(s) 100, 112, 389, 464, 951
Asp700I GAANNNNTTC 3 cut(s) 25, 872, 954
AspS9I GGNCC 4 cut(s) 429, 571, 837, 860
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 4 cut(s) 429, 571, 837, 860
AxyI CCTNAGG 1 cut(s) 447
BaeI ACNNNNGTAYC 2 cut(s) 886, 919
BbsI GAAGAC 2 cut(s) 779, 865
BbvI GCAGC 3 cut(s) 121, 592, 748
BccI CCATC 5 cut(s) 14, 289, 532, 745, 934
BciT130I CCWGG 5 cut(s) 31, 68, 336, 858, 960
BciVI GTATCC 1 cut(s) 621
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 4 cut(s) 219, 333, 631, 788
BfaI CTAG 2 cut(s) 222, 970
BfuI GTATCC 1 cut(s) 621
BglII AGATCT 1 cut(s) 722
BisI GCNGC 3 cut(s) 135, 606, 762
BlsI GCNGC 3 cut(s) 136, 607, 763
Bme1390I CCNGG 6 cut(s) 31, 68, 184, 336, 858, 960
Bme18I GGWCC 4 cut(s) 429, 571, 837, 860
BmgT120I GGNCC 4 cut(s) 429, 571, 837, 860
BmiI GGNNCC 3 cut(s) 36, 838, 839
BmrFI CCNGG 6 cut(s) 31, 68, 184, 336, 858, 960
BmsI GCATC 2 cut(s) 146, 916
BpiI GAAGAC 2 cut(s) 779, 865
BpmI CTGGAG 2 cut(s) 396, 852
Bpu14I TTCGAA 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 917
BpuMI CCSGG 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 299
BsaJI CCNNGG 5 cut(s) 30, 183, 856, 863, 945
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 846
Bse1I ACTGG 2 cut(s) 252, 370
Bse21I CCTNAGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 299
BseBI CCWGG 5 cut(s) 31, 68, 336, 858, 960
BseDI CCNNGG 5 cut(s) 30, 183, 856, 863, 945
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 846
BseMII CTCAG 2 cut(s) 438, 543
BseNI ACTGG 2 cut(s) 252, 370
BseXI GCAGC 3 cut(s) 121, 592, 748
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 2 cut(s) 17, 427
BshFI GGCC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 2 cut(s) 200, 850
BslI CCNNNNNNNGG 5 cut(s) 129, 130, 317, 341, 846
BsmAI GTCTC 4 cut(s) 219, 333, 631, 788
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 2 cut(s) 200, 850
BsnI GGCC 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 2 cut(s) 300, 722
Bsp19I CCATGG 1 cut(s) 863
BspACI CCGC 2 cut(s) 17, 427
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 2 cut(s) 439, 544
BspFNI CGCG 2 cut(s) 17, 427
BspLI GGNNCC 3 cut(s) 36, 838, 839
BspQI GCTCTTC 1 cut(s) 642
BspT104I TTCGAA 1 cut(s) 486
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 2 cut(s) 252, 370
BssECI CCNNGG 5 cut(s) 30, 183, 856, 863, 945
BssMI GATC 2 cut(s) 300, 722
BssNAI GTATAC 2 cut(s) 374, 802
BssT1I CCWWGG 2 cut(s) 863, 945
Bst1107I GTATAC 2 cut(s) 374, 802
Bst2UI CCWGG 5 cut(s) 31, 68, 336, 858, 960
Bst4CI ACNGT 4 cut(s) 291, 344, 575, 799
Bst6I CTCTTC 2 cut(s) 60, 642
BstAUI TGTACA 1 cut(s) 654
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 82, 759
BstDEI CTNAG 3 cut(s) 447, 519, 552
BstDSI CCRYGG 1 cut(s) 863
BstFNI CGCG 2 cut(s) 17, 427
BstKTI GATC 2 cut(s) 303, 725
BstMAI GTCTC 4 cut(s) 219, 333, 631, 788
BstMBI GATC 2 cut(s) 300, 722
BstMWI GCNNNNNNNGC 3 cut(s) 23, 176, 257
BstNI CCWGG 5 cut(s) 31, 68, 336, 858, 960
BstSCI CCNGG 6 cut(s) 29, 66, 182, 334, 856, 958
BstUI CGCG 2 cut(s) 17, 427
BstV1I GCAGC 3 cut(s) 121, 592, 748
BstV2I GAAGAC 2 cut(s) 779, 865
BstX2I RGATCY 1 cut(s) 722
BstXI CCANNNNNNTGG 1 cut(s) 864
BstYI RGATCY 1 cut(s) 722
BstZ17I GTATAC 2 cut(s) 374, 802
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 1 cut(s) 621
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 863
Cac8I GCNNGC 2 cut(s) 82, 759
Cfr13I GGNCC 4 cut(s) 429, 571, 837, 860
CpoI CGGWCCG 1 cut(s) 571
CseI GACGC 3 cut(s) 23, 483, 834
Csp6I GTAC 3 cut(s) 120, 332, 655
CspI CGGWCCG 1 cut(s) 571
CviAII CATG 1 cut(s) 864
CviQI GTAC 3 cut(s) 120, 332, 655
DdeI CTNAG 3 cut(s) 447, 519, 552
DpnI GATC 2 cut(s) 302, 724
DpnII GATC 2 cut(s) 300, 722
DraI TTTAAA 1 cut(s) 820
Eam1104I CTCTTC 2 cut(s) 60, 642
EarI CTCTTC 2 cut(s) 60, 642
Eco130I CCWWGG 2 cut(s) 863, 945
Eco47I GGWCC 4 cut(s) 429, 571, 837, 860
Eco57I CTGAAG 1 cut(s) 859
Eco81I CCTNAGG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 837
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 5 cut(s) 29, 66, 334, 856, 958
EcoT14I CCWWGG 2 cut(s) 863, 945
ErhI CCWWGG 2 cut(s) 863, 945
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 1 cut(s) 867
FaiI YATR 8 cut(s) 108, 231, 374, 616, 791, 802, 865, 923
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FaqI GGGAC 2 cut(s) 200, 850
FatI CATG 1 cut(s) 863
FauI CCCGC 1 cut(s) 10
FblI GTMKAC 2 cut(s) 373, 801
Fnu4HI GCNGC 3 cut(s) 135, 606, 762
Fsp4HI GCNGC 3 cut(s) 135, 606, 762
FspBI CTAG 2 cut(s) 222, 970
GluI GCNGC 3 cut(s) 135, 606, 762
GsuI CTGGAG 2 cut(s) 396, 852
HaeIII GGCC 1 cut(s) 452
HapII CCGG 1 cut(s) 183
HgaI GACGC 3 cut(s) 23, 483, 834
Hin1II CATG 1 cut(s) 867
HinfI GANTC 1 cut(s) 326
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 4 cut(s) 374, 673, 802, 965
Hpy188I TCNGA 4 cut(s) 13, 516, 631, 878
Hpy188III TCNNGA 6 cut(s) 150, 386, 413, 446, 681, 831
Hpy8I GTNNAC 4 cut(s) 374, 673, 802, 965
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 5 cut(s) 60, 271, 341, 482, 508
HpyCH4III ACNGT 4 cut(s) 291, 344, 575, 799
HpyCH4V TGCA 6 cut(s) 74, 84, 137, 470, 764, 907
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 176, 257
HpyF3I CTNAG 3 cut(s) 447, 519, 552
Hsp92II CATG 1 cut(s) 867
KflI GGGWCCC 1 cut(s) 837
Kzo9I GATC 2 cut(s) 300, 722
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 3 cut(s) 121, 592, 748
LweI GCATC 2 cut(s) 146, 916
MaeI CTAG 2 cut(s) 222, 970
MaeIII GTNAC 1 cut(s) 395
MalI GATC 2 cut(s) 302, 724
MboI GATC 2 cut(s) 300, 722
MboII GAAGA 7 cut(s) 47, 599, 659, 736, 784, 865, 947
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 1 cut(s) 722
MluCI AATT 9 cut(s) 100, 112, 216, 266, 389, 464, 690, 814, 951
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 5 cut(s) 344, 442, 529, 827, 879
MroXI GAANNNNTTC 3 cut(s) 25, 872, 954
MseI TTAA 3 cut(s) 404, 621, 819
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 6 cut(s) 31, 68, 184, 336, 858, 960
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 5 cut(s) 31, 68, 336, 858, 960
MvnI CGCG 2 cut(s) 17, 427
MwoI GCNNNNNNNGC 3 cut(s) 23, 176, 257
NciI CCSGG 1 cut(s) 184
NcoI CCATGG 1 cut(s) 863
NdeII GATC 2 cut(s) 300, 722
NlaIII CATG 1 cut(s) 867
NlaIV GGNNCC 3 cut(s) 36, 838, 839
NmuCI GTSAC 1 cut(s) 395
NspV TTCGAA 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 642
PdmI GAANNNNTTC 3 cut(s) 25, 872, 954
PkrI GCNGC 3 cut(s) 136, 607, 763
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PpuMI RGGWCCY 1 cut(s) 837
Psp5II RGGWCCY 1 cut(s) 837
Psp6I CCWGG 5 cut(s) 29, 66, 334, 856, 958
PspGI CCWGG 5 cut(s) 29, 66, 334, 856, 958
PspN4I GGNNCC 3 cut(s) 36, 838, 839
PspPI GGNCC 4 cut(s) 429, 571, 837, 860
PspPPI RGGWCCY 1 cut(s) 837
PsuI RGATCY 1 cut(s) 722
RsaI GTAC 3 cut(s) 121, 333, 656
RsaNI GTAC 3 cut(s) 120, 332, 655
Rsr2I CGGWCCG 1 cut(s) 571
RsrII CGGWCCG 1 cut(s) 571
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 3 cut(s) 404, 621, 819
SatI GCNGC 3 cut(s) 135, 606, 762
Sau3AI GATC 2 cut(s) 300, 722
Sau96I GGNCC 4 cut(s) 429, 571, 837, 860
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 6 cut(s) 31, 68, 184, 336, 858, 960
SfaNI GCATC 2 cut(s) 146, 916
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 4 cut(s) 429, 571, 837, 860
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 9 cut(s) 100, 112, 216, 266, 389, 464, 690, 814, 951
SsiI CCGC 2 cut(s) 17, 427
SspI AATATT 2 cut(s) 89, 438
SspMI CTAG 2 cut(s) 222, 970
StyD4I CCNGG 6 cut(s) 29, 66, 182, 334, 856, 958
StyI CCWWGG 2 cut(s) 863, 945
TaaI ACNGT 4 cut(s) 291, 344, 575, 799
TaqI TCGA 5 cut(s) 303, 385, 486, 534, 645
TaqII GACCGA 1 cut(s) 729
TasI AATT 9 cut(s) 100, 112, 216, 266, 389, 464, 690, 814, 951
TatI WGTACW 1 cut(s) 654
Tru1I TTAA 3 cut(s) 404, 621, 819
Tru9I TTAA 3 cut(s) 404, 621, 819
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 134, 605, 761
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 249, 471, 606
TspGWI ACGGA 3 cut(s) 27, 584, 717
VpaK11BI GGWCC 4 cut(s) 429, 571, 837, 860
XapI RAATTY 5 cut(s) 100, 112, 389, 464, 951
XmiI GTMKAC 2 cut(s) 373, 801
XmnI GAANNNNTTC 3 cut(s) 25, 872, 954
XspI CTAG 2 cut(s) 222, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.