RLG00000001423

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013496
Physical Location & Seq
Reverse (-)
15422722 .. 15428493
5772 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001423

Sequence Viewer

Length: 1062 bp
ATGGATCTGTGGTCCGTTCACGTCAAGAACAACGTCACCAGAGCGGCCCCCTTTCTGCCCAGAAGCTCCTTCTCCGAGAAACCCATTTCCTGGAACTGCGGAAAGCCCAGGCCTTTGTGGCTCCGACTTGAAGACGGTGGGAGGGTCTTTGACATTCGGGACTTGAATTTGAAGCCGCGCAGGGATGCTTTGGTGGTCAGAGCCATGGGCAAGAAGAACAACAATAACAACAATCAGGGCAATTCCTCCAACTCTTCTTCTTCCTCGGGAAATGATGACCACTCTATTCCAGAAGGAGATGGTGCAAAAGAAAACAACTCTGAAAAAAGCAAAGACACTTCTTCCCAGAAAAGTTATCAATCAAGTTTGGATTGGAGAGAGGTCAGAGCAATGTTTATTCGCAGGGAGCAGGCTGAATCTGATCCTCAGTACCAGTCGAAACCTCTTGGCGAGAAGTGGGCTCATCCCCTTGCAGTACCTGAGACAGGCTGTATCCTCGTTGCAACAGAAAAGCTTGACGGAGTGCGCACCTTTGAAAGAACTGTTGTTCTCCTCCTCCGATCAGGAAACAGACACCCAGAAGAGGGACCATTTGGTGTTGTTATCAACAGGCCTCTACACAAAAAGATTAAACACATGAGACCCACAAATCTTGATCTTGCAACCACATTCTCTGATTGCTCTCTGCATTTTGGTGGGCCTCTCGAGGCAAGCATGTTCTTGTTGAAAACAGGGGGAAGGTCAAAGCTTCCCGGGTTTGAAGAGGTGATCCCTGGGCTTTGTTTTGGTGCTCGTAACAGTCTGGATGAAGCTGCTGGTCTAGTGAAGAAAGGGCTTCTTAAGCCTCAAGATTTCAGATTTTTTGTTGGCTATGCAGGGTGGCAGCTGGACCAGTTGACAGAGGAGATTGAATCTGATTACTGGTATGTGGCTGCTTGCAGCCCTAATTTGATATATGGAGCTTCATCAGATTCTTCATCAGAAAGTTTGTGGGAGGAAATCTTGCAGCTAATGGGTGGCCAGTATTCTGAATTGAGTCGAAAGCCTAAGCAAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

354

Amino Acids

39.51

Weight (kDa)

7.65

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 177 - 339 8.1e-31 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33780
fragaria_vesca FvH4_5g33090
malus_domestica MD08G1215000.v1.1 MD15G1398000.v1.1
prunus_persica Prupe.1G546400_v2.0.a1
pyrus_communis pycom08g18590 pycom15g35770
rosa_chinensis RchiOBHm_Chr7g0231261
rosa_laevigata RLG00000001423
rosa_multiflora Rmu_sc0003396.1_g000004
rosa_roxburghii Rroxscaffold_3G00229370
rosa_rugosa Rorug07G0265600 Rorug07G0265600
rosa_samantha Rh7AG419300 Rh7BG394500 Rh7CG439000 Rh7DG412900
rosa_wichuraiana Rw7G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 527
AccB7I CCANNNNNTGG 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 44
AccII CGCG 1 cut(s) 178
AciI CCGC 3 cut(s) 44, 99, 176
AclWI GGATC 3 cut(s) 12, 416, 763
AcoI YGGCCR 1 cut(s) 1018
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 2 cut(s) 431, 477
AfiI CCNNNNNNNGG 4 cut(s) 90, 485, 583, 584
AflII CTTAAG 1 cut(s) 839
AgsI TTSAA 7 cut(s) 131, 166, 172, 536, 727, 761, 911
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 3 cut(s) 89, 107, 772
AluBI AGCT 7 cut(s) 66, 514, 748, 812, 886, 962, 1009
AluI AGCT 7 cut(s) 66, 514, 748, 812, 886, 962, 1009
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 2 cut(s) 476, 634
AlwI GGATC 3 cut(s) 12, 416, 763
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 3 cut(s) 265, 704, 752
AoxI GGCC 5 cut(s) 45, 110, 611, 698, 1018
ApeKI GCWGC 5 cut(s) 812, 883, 932, 939, 1006
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 2 cut(s) 180, 528
AspS9I GGNCC 5 cut(s) 12, 46, 587, 698, 889
AsuC2I CCSGG 2 cut(s) 753, 754
AsuHPI GGTGA 2 cut(s) 28, 778
AvaI CYCGRG 3 cut(s) 265, 704, 752
AvaII GGWCC 3 cut(s) 12, 587, 889
BalI TGGCCA 1 cut(s) 1020
BanII GRGCYC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 5 cut(s) 799, 895, 919, 951, 1018
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 3 cut(s) 91, 109, 774
BciVI GTATCC 1 cut(s) 503
BcnI CCSGG 2 cut(s) 753, 754
BcoDI GTCTC 2 cut(s) 476, 634
BfaI CTAG 1 cut(s) 821
BfrI CTTAAG 1 cut(s) 839
BfuI GTATCC 1 cut(s) 503
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 7 cut(s) 45, 176, 813, 884, 933, 940, 1007
BlsI GCNGC 7 cut(s) 46, 177, 814, 885, 934, 941, 1008
Bme1390I CCNGG 5 cut(s) 91, 109, 753, 754, 774
Bme18I GGWCC 3 cut(s) 12, 587, 889
BmeT110I CYCGRG 3 cut(s) 265, 704, 752
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 5 cut(s) 12, 46, 587, 698, 889
BmiI GGNNCC 3 cut(s) 48, 122, 588
BmrFI CCNGG 5 cut(s) 91, 109, 753, 754, 774
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 753, 754
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 6 cut(s) 107, 204, 264, 752, 772, 773
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 485, 583, 584
Bse1I ACTGG 4 cut(s) 433, 892, 926, 1021
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 3 cut(s) 91, 109, 774
BseDI CCNNGG 6 cut(s) 107, 204, 264, 752, 772, 773
BseGI GGATG 3 cut(s) 190, 463, 811
BseLI CCNNNNNNNGG 4 cut(s) 90, 485, 583, 584
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 440, 471
BseNI ACTGG 4 cut(s) 433, 892, 926, 1021
BseRI GAGGAG 3 cut(s) 542, 545, 917
BseXI GCAGC 5 cut(s) 799, 895, 919, 951, 1018
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 5 cut(s) 47, 112, 613, 700, 1020
BsiHKAI GWGCWC 1 cut(s) 793
BsiHKCI CYCGRG 3 cut(s) 265, 704, 752
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 2 cut(s) 173, 600
BslI CCNNNNNNNGG 4 cut(s) 90, 485, 583, 584
BsmAI GTCTC 2 cut(s) 476, 634
BsmFI GGGAC 2 cut(s) 173, 600
BsnI GGCC 5 cut(s) 47, 112, 613, 700, 1020
Bso31I GGTCTC 1 cut(s) 634
BsoBI CYCGRG 3 cut(s) 265, 704, 752
Bsp1286I GDGCHC 2 cut(s) 463, 793
Bsp143I GATC 5 cut(s) 4, 421, 560, 655, 768
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 3 cut(s) 44, 99, 176
BspANI GGCC 5 cut(s) 47, 112, 613, 700, 1020
BspCNI CTCAG 2 cut(s) 439, 472
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 48, 122, 588
BspPI GGATC 3 cut(s) 12, 416, 763
BspTI CTTAAG 1 cut(s) 839
BspTNI GGTCTC 1 cut(s) 634
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 4 cut(s) 433, 892, 926, 1021
BssECI CCNNGG 6 cut(s) 107, 204, 264, 752, 772, 773
BssMI GATC 5 cut(s) 4, 421, 560, 655, 768
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 3 cut(s) 91, 109, 774
Bst4CI ACNGT 3 cut(s) 137, 544, 800
Bst6I CTCTTC 3 cut(s) 259, 576, 756
BstAFI CTTAAG 1 cut(s) 839
BstC8I GCNNGC 3 cut(s) 411, 712, 937
BstDEI CTNAG 3 cut(s) 426, 480, 1047
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 3 cut(s) 190, 463, 811
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 2 cut(s) 180, 528
BstKTI GATC 5 cut(s) 7, 424, 563, 658, 771
BstMAI GTCTC 2 cut(s) 476, 634
BstMBI GATC 5 cut(s) 4, 421, 560, 655, 768
BstMWI GCNNNNNNNGC 2 cut(s) 118, 841
BstNI CCWGG 3 cut(s) 91, 109, 774
BstNSI RCATGY 1 cut(s) 718
BstSCI CCNGG 5 cut(s) 89, 107, 751, 752, 772
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 5 cut(s) 799, 895, 919, 951, 1018
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 5 cut(s) 47, 112, 613, 700, 1020
BtgI CCRYGG 1 cut(s) 204
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 3 cut(s) 190, 463, 811
Cac8I GCNNGC 3 cut(s) 411, 712, 937
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 2 cut(s) 180, 528
Cfr13I GGNCC 5 cut(s) 12, 46, 587, 698, 889
Cfr9I CCCGGG 1 cut(s) 752
Csp6I GTAC 2 cut(s) 430, 476
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 3 cut(s) 205, 637, 715
CviQI GTAC 2 cut(s) 430, 476
DdeI CTNAG 3 cut(s) 426, 480, 1047
DpnI GATC 5 cut(s) 6, 423, 562, 657, 770
DpnII GATC 5 cut(s) 4, 421, 560, 655, 768
EaeI YGGCCR 1 cut(s) 1018
Eam1104I CTCTTC 3 cut(s) 259, 576, 756
EarI CTCTTC 3 cut(s) 259, 576, 756
Eco130I CCWWGG 1 cut(s) 204
Eco147I AGGCCT 2 cut(s) 112, 613
Eco24I GRGCYC 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 3 cut(s) 12, 587, 889
Eco88I CYCGRG 3 cut(s) 265, 704, 752
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRII CCWGG 3 cut(s) 89, 107, 772
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 208, 640, 718
FaiI YATR 8 cut(s) 206, 638, 716, 873, 927, 955, 957, 1058
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 2 cut(s) 173, 600
FatI CATG 3 cut(s) 204, 636, 714
Fnu4HI GCNGC 7 cut(s) 45, 176, 813, 884, 933, 940, 1007
FokI GGATG 3 cut(s) 197, 450, 818
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 7 cut(s) 45, 176, 813, 884, 933, 940, 1007
FspAI RTGCGCAY 1 cut(s) 527
FspBI CTAG 1 cut(s) 821
FspI TGCGCA 1 cut(s) 527
GlaI GCGC 2 cut(s) 179, 527
GluI GCNGC 7 cut(s) 45, 176, 813, 884, 933, 940, 1007
HaeIII GGCC 5 cut(s) 47, 112, 613, 700, 1020
HapII CCGG 1 cut(s) 753
HhaI GCGC 2 cut(s) 180, 528
Hin1II CATG 3 cut(s) 208, 640, 718
Hin6I GCGC 2 cut(s) 178, 526
HinP1I GCGC 2 cut(s) 178, 526
HincII GTYRAC 1 cut(s) 897
HindII GTYRAC 1 cut(s) 897
HindIII AAGCTT 2 cut(s) 512, 746
HinfI GANTC 4 cut(s) 416, 911, 971, 1036
HpaII CCGG 1 cut(s) 753
HphI GGTGA 2 cut(s) 28, 778
Hpy166II GTNNAC 2 cut(s) 19, 897
Hpy188III TCNNGA 9 cut(s) 25, 158, 267, 290, 564, 653, 704, 803, 848
Hpy8I GTNNAC 2 cut(s) 19, 897
HpyAV CCTTC 3 cut(s) 79, 287, 732
HpyCH4III ACNGT 3 cut(s) 137, 544, 800
HpyCH4IV ACGT 2 cut(s) 21, 33
HpyCH4V TGCA 8 cut(s) 305, 473, 503, 662, 688, 875, 939, 1006
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 841
HpyF3I CTNAG 3 cut(s) 426, 480, 1047
HpySE526I ACGT 2 cut(s) 21, 33
Hsp92II CATG 3 cut(s) 208, 640, 718
HspAI GCGC 2 cut(s) 178, 526
Kzo9I GATC 5 cut(s) 4, 421, 560, 655, 768
LmnI GCTCC 4 cut(s) 71, 126, 406, 959
Lsp1109I GCAGC 5 cut(s) 799, 895, 919, 951, 1018
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 821
MaeII ACGT 2 cut(s) 21, 33
MaeIII GTNAC 2 cut(s) 34, 794
MalI GATC 5 cut(s) 6, 423, 562, 657, 770
MbiI CCGCTC 1 cut(s) 44
MboI GATC 5 cut(s) 4, 421, 560, 655, 768
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 463, 793
MlsI TGGCCA 1 cut(s) 1020
MluCI AATT 4 cut(s) 166, 241, 946, 1031
MluNI TGGCCA 1 cut(s) 1020
MlyI GAGTC 1 cut(s) 1045
MmeI TCCRAC 2 cut(s) 148, 273
Mox20I TGGCCA 1 cut(s) 1020
MscI TGGCCA 1 cut(s) 1020
MseI TTAA 2 cut(s) 630, 840
MslI CAYNNNNRTG 1 cut(s) 693
Msp20I TGGCCA 1 cut(s) 1020
MspA1I CMGCKG 1 cut(s) 886
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 5 cut(s) 91, 109, 753, 754, 774
MvaI CCWGG 3 cut(s) 91, 109, 774
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 118, 841
NciI CCSGG 2 cut(s) 753, 754
NcoI CCATGG 1 cut(s) 204
NdeII GATC 5 cut(s) 4, 421, 560, 655, 768
NlaIII CATG 3 cut(s) 208, 640, 718
NlaIV GGNNCC 3 cut(s) 48, 122, 588
NmuCI GTSAC 1 cut(s) 34
NsbI TGCGCA 1 cut(s) 527
NspI RCATGY 1 cut(s) 718
PaeR7I CTCGAG 1 cut(s) 704
PasI CCCWGGG 1 cut(s) 773
PceI AGGCCT 2 cut(s) 112, 613
PfeI GAWTC 3 cut(s) 416, 911, 971
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 7 cut(s) 46, 177, 814, 885, 934, 941, 1008
PleI GAGTC 1 cut(s) 1044
PpsI GAGTC 1 cut(s) 1044
Psp6I CCWGG 3 cut(s) 89, 107, 772
PspGI CCWGG 3 cut(s) 89, 107, 772
PspN4I GGNNCC 3 cut(s) 48, 122, 588
PspPI GGNCC 5 cut(s) 12, 46, 587, 698, 889
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 886
RsaI GTAC 2 cut(s) 431, 477
RsaNI GTAC 2 cut(s) 430, 476
RseI CAYNNNNRTG 1 cut(s) 693
SaqAI TTAA 2 cut(s) 630, 840
SatI GCNGC 7 cut(s) 45, 176, 813, 884, 933, 940, 1007
Sau3AI GATC 5 cut(s) 4, 421, 560, 655, 768
Sau96I GGNCC 5 cut(s) 12, 46, 587, 698, 889
SchI GAGTC 1 cut(s) 1045
ScrFI CCNGG 5 cut(s) 91, 109, 753, 754, 774
SduI GDGCHC 2 cut(s) 463, 793
SfaNI GCATC 1 cut(s) 175
Sfr274I CTCGAG 1 cut(s) 704
SinI GGWCC 3 cut(s) 12, 587, 889
SlaI CTCGAG 1 cut(s) 704
SmaI CCCGGG 1 cut(s) 754
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 3 cut(s) 704, 839, 846
SmoI CTYRAG 3 cut(s) 704, 839, 846
Sse9I AATT 4 cut(s) 166, 241, 946, 1031
SseBI AGGCCT 2 cut(s) 112, 613
SsiI CCGC 3 cut(s) 44, 99, 176
SspMI CTAG 1 cut(s) 821
StuI AGGCCT 2 cut(s) 112, 613
StyD4I CCNGG 5 cut(s) 89, 107, 751, 752, 772
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 137, 544, 800
TaiI ACGT 2 cut(s) 24, 36
TaqI TCGA 3 cut(s) 437, 705, 1039
TasI AATT 4 cut(s) 166, 241, 946, 1031
TauI GCSGC 2 cut(s) 47, 178
TfiI GAWTC 3 cut(s) 416, 911, 971
Tru1I TTAA 2 cut(s) 630, 840
Tru9I TTAA 2 cut(s) 630, 840
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 5 cut(s) 812, 883, 932, 939, 1006
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 822, 954, 966
TspGWI ACGGA 2 cut(s) 4, 534
TspMI CCCGGG 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 839
VpaK11BI GGWCC 3 cut(s) 12, 587, 889
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 1 cut(s) 166
XceI RCATGY 1 cut(s) 718
XhoI CTCGAG 1 cut(s) 704
XmaI CCCGGG 1 cut(s) 752
XspI CTAG 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.