Rh7AG419300

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013496
Physical Location & Seq
Forward (+)
56280595 .. 56286153
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG419300.1

Sequence Viewer

Length: 1056 bp
ATGGATCTGTGGTCCGTTCACGTCAAGAACAACGTCACCAGAGCGGCCCCCTTTCTGCCCAGAAACTCCTTCTCCGAGAAACCCATTTCCTGGAACTGCGGAAAGCGCAGGCCTTTGTGGCTCCGACTTGAAGATGGTGGGAGGGTGTTCGACATTCGGGACTTGAATTTGAAGCCGCGCAGGGATGCTTTGGTGGTCAGAGCCATGGGCAAGAAGAACAACAACAATCAGGGCAATTCCTCCAACTCTTCTTCTTCCTCGGGAAATGATGACCACTCTATTCCAGAAGGAGATGGTGTAAAAGAAAACAACTCTGAAAAAAGCAAAGACACTTCTTCCCAGAAAAGTTATCATACAAATTTGGATTGGAGAGAGGTCAGAGCAATGTTTATTCGCAGGGAGCAGGCTGAATCTGATCCTCAGTACCAGTCGAAACCTCTTGGCGAGAAGTGGGCTCATCCCCTTGCAGTACCTGAGACAGGCTGTATCCTCGTTGCAACAGAAAAGCTTGATGGAGTGCGCACCTTTGAAAGAACTGTTGTTCTCCTCCTTCGATCAGGAAACAGACACCCAGAAGAGGGACCATTTGGTGTTGTTATCAACAGGCCACTACACAAAAAGATTAAACACATGAGACCCACAAATCTTGATCTTGCAACCACATTCTCTGATTGCTCTCTGCATTTTGGTGGGCCTCTAGAGGCAAGCATGTTCTTGTTGAAAACAGGGGGAAGGTCAAAGCTTCCCGGGTTTGAAGAGGTGATCCCTGGTCTTTGTTTTGGTGCTCGTAACAGTCTGGATGAAGCTGCTGGTCTAGTGAAGAAAGGGCTTCTTAAGCCTCAAGATTTCAGATTTTTTGTTGGCTATGCAGGGTGGCAGCTGGACCAGTTGACAGAGGAGATTGAATCCGATTACTGGTATGTGGCTGCTTGCAGCCCTAATTTGATATATGGAGCTTCATCAGATTCTTCGTCAGAAAGTTTGTGGGAGGAAATCCTGCAGCTAATGGGTGGCCAGTATTCTGAATTGAGTCGAAAGCCTAAGCAAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

351

Amino Acids

39.44

Weight (kDa)

8.18

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 175 - 337 8e-31 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33780
fragaria_vesca FvH4_5g33090
malus_domestica MD08G1215000.v1.1 MD15G1398000.v1.1
prunus_persica Prupe.1G546400_v2.0.a1
pyrus_communis pycom08g18590 pycom15g35770
rosa_chinensis RchiOBHm_Chr7g0231261
rosa_laevigata RLG00000001423
rosa_multiflora Rmu_sc0003396.1_g000004
rosa_roxburghii Rroxscaffold_3G00229370
rosa_rugosa Rorug07G0265600 Rorug07G0265600
rosa_samantha Rh7AG419300 Rh7BG394500 Rh7CG439000 Rh7DG412900
rosa_wichuraiana Rw7G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 44
AccII CGCG 1 cut(s) 178
AciI CCGC 3 cut(s) 44, 99, 176
AclWI GGATC 3 cut(s) 12, 410, 757
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 2 cut(s) 166, 358
AfaI GTAC 2 cut(s) 425, 471
AfiI CCNNNNNNNGG 5 cut(s) 90, 479, 577, 578, 915
AflII CTTAAG 1 cut(s) 833
AgsI TTSAA 7 cut(s) 131, 166, 172, 530, 721, 755, 905
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 2 cut(s) 89, 766
AluBI AGCT 6 cut(s) 508, 742, 806, 880, 956, 1003
AluI AGCT 6 cut(s) 508, 742, 806, 880, 956, 1003
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 2 cut(s) 470, 628
AlwI GGATC 3 cut(s) 12, 410, 757
AlwNI CAGNNNCTG 1 cut(s) 473
Ama87I CYCGRG 2 cut(s) 259, 746
AoxI GGCC 5 cut(s) 45, 110, 605, 692, 1012
ApeKI GCWGC 5 cut(s) 806, 877, 926, 933, 1000
ApoI RAATTY 2 cut(s) 166, 358
AspLEI GCGC 3 cut(s) 108, 180, 522
AspS9I GGNCC 5 cut(s) 12, 46, 581, 692, 883
AsuC2I CCSGG 2 cut(s) 747, 748
AsuHPI GGTGA 2 cut(s) 28, 772
AvaI CYCGRG 2 cut(s) 259, 746
AvaII GGWCC 3 cut(s) 12, 581, 883
BalI TGGCCA 1 cut(s) 1014
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 5 cut(s) 793, 889, 913, 945, 1012
BccI CCATC 3 cut(s) 128, 287, 506
BciT130I CCWGG 2 cut(s) 91, 768
BciVI GTATCC 1 cut(s) 497
BcnI CCSGG 2 cut(s) 747, 748
BcoDI GTCTC 2 cut(s) 470, 628
BfaI CTAG 2 cut(s) 698, 815
BfmI CTRYAG 1 cut(s) 998
BfrI CTTAAG 1 cut(s) 833
BfuI GTATCC 1 cut(s) 497
BglI GCCNNNNNGGC 1 cut(s) 118
BisI GCNGC 7 cut(s) 45, 176, 807, 878, 927, 934, 1001
BlsI GCNGC 7 cut(s) 46, 177, 808, 879, 928, 935, 1002
Bme1390I CCNGG 4 cut(s) 91, 747, 748, 768
Bme18I GGWCC 3 cut(s) 12, 581, 883
BmeT110I CYCGRG 2 cut(s) 259, 746
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 5 cut(s) 12, 46, 581, 692, 883
BmiI GGNNCC 3 cut(s) 48, 122, 582
BmrFI CCNGG 4 cut(s) 91, 747, 748, 768
BmsI GCATC 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 1041
BpuEI CTTGAG 1 cut(s) 825
BpuMI CCSGG 2 cut(s) 747, 748
BsaI GGTCTC 1 cut(s) 628
BsaJI CCNNGG 4 cut(s) 204, 258, 746, 766
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 282, 312
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 479, 577, 578, 915
Bse1I ACTGG 4 cut(s) 427, 886, 920, 1015
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 2 cut(s) 91, 768
BseDI CCNNGG 4 cut(s) 204, 258, 746, 766
BseGI GGATG 3 cut(s) 190, 457, 805
BseLI CCNNNNNNNGG 5 cut(s) 90, 479, 577, 578, 915
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 434, 465
BseNI ACTGG 4 cut(s) 427, 886, 920, 1015
BseRI GAGGAG 2 cut(s) 536, 911
BseXI GCAGC 5 cut(s) 793, 889, 913, 945, 1012
Bsh1236I CGCG 1 cut(s) 178
BshFI GGCC 5 cut(s) 47, 112, 607, 694, 1014
BsiHKAI GWGCWC 1 cut(s) 787
BsiHKCI CYCGRG 2 cut(s) 259, 746
BsiSI CCGG 1 cut(s) 747
BslFI GGGAC 2 cut(s) 173, 594
BslI CCNNNNNNNGG 5 cut(s) 90, 479, 577, 578, 915
BsmAI GTCTC 2 cut(s) 470, 628
BsmFI GGGAC 2 cut(s) 173, 594
BsnI GGCC 5 cut(s) 47, 112, 607, 694, 1014
Bso31I GGTCTC 1 cut(s) 628
BsoBI CYCGRG 2 cut(s) 259, 746
Bsp1286I GDGCHC 2 cut(s) 457, 787
Bsp143I GATC 5 cut(s) 4, 415, 554, 649, 762
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 3 cut(s) 44, 99, 176
BspANI GGCC 5 cut(s) 47, 112, 607, 694, 1014
BspCNI CTCAG 2 cut(s) 433, 466
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 48, 122, 582
BspMAI CTGCAG 1 cut(s) 1002
BspPI GGATC 3 cut(s) 12, 410, 757
BspTI CTTAAG 1 cut(s) 833
BspTNI GGTCTC 1 cut(s) 628
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 4 cut(s) 427, 886, 920, 1015
BssECI CCNNGG 4 cut(s) 204, 258, 746, 766
BssMI GATC 5 cut(s) 4, 415, 554, 649, 762
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 91, 768
Bst4CI ACNGT 2 cut(s) 538, 794
Bst6I CTCTTC 3 cut(s) 253, 570, 750
BstAFI CTTAAG 1 cut(s) 833
BstC8I GCNNGC 4 cut(s) 110, 405, 706, 931
BstDEI CTNAG 3 cut(s) 420, 474, 1041
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 190, 457, 805
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 3 cut(s) 108, 180, 522
BstKTI GATC 5 cut(s) 7, 418, 557, 652, 765
BstMAI GTCTC 2 cut(s) 470, 628
BstMBI GATC 5 cut(s) 4, 415, 554, 649, 762
BstMWI GCNNNNNNNGC 3 cut(s) 105, 118, 835
BstNI CCWGG 2 cut(s) 91, 768
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 4 cut(s) 89, 745, 746, 766
BstSFI CTRYAG 1 cut(s) 998
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 5 cut(s) 793, 889, 913, 945, 1012
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 497
BsuRI GGCC 5 cut(s) 47, 112, 607, 694, 1014
BtgI CCRYGG 1 cut(s) 204
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 3 cut(s) 190, 457, 805
Cac8I GCNNGC 4 cut(s) 110, 405, 706, 931
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 3 cut(s) 108, 180, 522
Cfr13I GGNCC 5 cut(s) 12, 46, 581, 692, 883
Cfr9I CCCGGG 1 cut(s) 746
Csp6I GTAC 2 cut(s) 424, 470
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 3 cut(s) 205, 631, 709
CviQI GTAC 2 cut(s) 424, 470
DdeI CTNAG 3 cut(s) 420, 474, 1041
DpnI GATC 5 cut(s) 6, 417, 556, 651, 764
DpnII GATC 5 cut(s) 4, 415, 554, 649, 762
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 3 cut(s) 253, 570, 750
EarI CTCTTC 3 cut(s) 253, 570, 750
Eco130I CCWWGG 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 628
Eco47I GGWCC 3 cut(s) 12, 581, 883
Eco88I CYCGRG 2 cut(s) 259, 746
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 89, 766
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 208, 634, 712
FaiI YATR 9 cut(s) 206, 354, 632, 710, 867, 921, 949, 951, 1052
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 2 cut(s) 173, 594
FatI CATG 3 cut(s) 204, 630, 708
Fnu4HI GCNGC 7 cut(s) 45, 176, 807, 878, 927, 934, 1001
FokI GGATG 3 cut(s) 197, 444, 812
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 7 cut(s) 45, 176, 807, 878, 927, 934, 1001
FspAI RTGCGCAY 1 cut(s) 521
FspBI CTAG 2 cut(s) 698, 815
FspI TGCGCA 1 cut(s) 521
GlaI GCGC 3 cut(s) 107, 179, 521
GluI GCNGC 7 cut(s) 45, 176, 807, 878, 927, 934, 1001
HaeIII GGCC 5 cut(s) 47, 112, 607, 694, 1014
HapII CCGG 1 cut(s) 747
HhaI GCGC 3 cut(s) 108, 180, 522
Hin1II CATG 3 cut(s) 208, 634, 712
Hin6I GCGC 3 cut(s) 106, 178, 520
HinP1I GCGC 3 cut(s) 106, 178, 520
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HindIII AAGCTT 2 cut(s) 506, 740
HinfI GANTC 4 cut(s) 410, 905, 965, 1030
HpaII CCGG 1 cut(s) 747
HphI GGTGA 2 cut(s) 28, 772
Hpy166II GTNNAC 2 cut(s) 19, 891
Hpy188III TCNNGA 9 cut(s) 25, 158, 261, 284, 558, 647, 698, 797, 842
Hpy8I GTNNAC 2 cut(s) 19, 891
HpyAV CCTTC 4 cut(s) 79, 281, 560, 726
HpyCH4III ACNGT 2 cut(s) 538, 794
HpyCH4IV ACGT 2 cut(s) 21, 33
HpyCH4V TGCA 7 cut(s) 467, 497, 656, 682, 869, 933, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 118, 835
HpyF3I CTNAG 3 cut(s) 420, 474, 1041
HpySE526I ACGT 2 cut(s) 21, 33
Hsp92II CATG 3 cut(s) 208, 634, 712
HspAI GCGC 3 cut(s) 106, 178, 520
Kzo9I GATC 5 cut(s) 4, 415, 554, 649, 762
LmnI GCTCC 3 cut(s) 126, 400, 953
Lsp1109I GCAGC 5 cut(s) 793, 889, 913, 945, 1012
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 698, 815
MaeII ACGT 2 cut(s) 21, 33
MaeIII GTNAC 2 cut(s) 34, 788
MalI GATC 5 cut(s) 6, 417, 556, 651, 764
MbiI CCGCTC 1 cut(s) 44
MboI GATC 5 cut(s) 4, 415, 554, 649, 762
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 457, 787
MlsI TGGCCA 1 cut(s) 1014
MluCI AATT 5 cut(s) 166, 235, 358, 940, 1025
MluNI TGGCCA 1 cut(s) 1014
MlyI GAGTC 1 cut(s) 1039
MmeI TCCRAC 2 cut(s) 148, 267
Mox20I TGGCCA 1 cut(s) 1014
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 2 cut(s) 624, 834
MslI CAYNNNNRTG 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 1014
MspA1I CMGCKG 1 cut(s) 880
MspCI CTTAAG 1 cut(s) 833
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 4 cut(s) 91, 747, 748, 768
MvaI CCWGG 2 cut(s) 91, 768
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 105, 118, 835
NciI CCSGG 2 cut(s) 747, 748
NcoI CCATGG 1 cut(s) 204
NdeII GATC 5 cut(s) 4, 415, 554, 649, 762
NlaIII CATG 3 cut(s) 208, 634, 712
NlaIV GGNNCC 3 cut(s) 48, 122, 582
NmuCI GTSAC 1 cut(s) 34
NsbI TGCGCA 1 cut(s) 521
NspI RCATGY 1 cut(s) 712
PceI AGGCCT 1 cut(s) 112
PfeI GAWTC 3 cut(s) 410, 905, 965
PflMI CCANNNNNTGG 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 7 cut(s) 46, 177, 808, 879, 928, 935, 1002
PleI GAGTC 1 cut(s) 1038
PpsI GAGTC 1 cut(s) 1038
Psp6I CCWGG 2 cut(s) 89, 766
PspGI CCWGG 2 cut(s) 89, 766
PspN4I GGNNCC 3 cut(s) 48, 122, 582
PspPI GGNCC 5 cut(s) 12, 46, 581, 692, 883
PstI CTGCAG 1 cut(s) 1002
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 2 cut(s) 425, 471
RsaNI GTAC 2 cut(s) 424, 470
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 2 cut(s) 624, 834
SatI GCNGC 7 cut(s) 45, 176, 807, 878, 927, 934, 1001
Sau3AI GATC 5 cut(s) 4, 415, 554, 649, 762
Sau96I GGNCC 5 cut(s) 12, 46, 581, 692, 883
SchI GAGTC 1 cut(s) 1039
ScrFI CCNGG 4 cut(s) 91, 747, 748, 768
SduI GDGCHC 2 cut(s) 457, 787
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 998
SinI GGWCC 3 cut(s) 12, 581, 883
SmaI CCCGGG 1 cut(s) 748
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 2 cut(s) 833, 840
SmoI CTYRAG 2 cut(s) 833, 840
Sse9I AATT 5 cut(s) 166, 235, 358, 940, 1025
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 3 cut(s) 44, 99, 176
SspMI CTAG 2 cut(s) 698, 815
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 4 cut(s) 89, 745, 746, 766
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 538, 794
TaiI ACGT 2 cut(s) 24, 36
TaqI TCGA 4 cut(s) 150, 431, 553, 1033
TasI AATT 5 cut(s) 166, 235, 358, 940, 1025
TauI GCSGC 2 cut(s) 47, 178
TfiI GAWTC 3 cut(s) 410, 905, 965
Tru1I TTAA 2 cut(s) 624, 834
Tru9I TTAA 2 cut(s) 624, 834
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 5 cut(s) 806, 877, 926, 933, 1000
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 816, 948
TspGWI ACGGA 1 cut(s) 4
TspMI CCCGGG 1 cut(s) 746
Van91I CCANNNNNTGG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 833
VpaK11BI GGWCC 3 cut(s) 12, 581, 883
XagI CCTNNNNNAGG 1 cut(s) 477
XapI RAATTY 2 cut(s) 166, 358
XbaI TCTAGA 1 cut(s) 697
XceI RCATGY 1 cut(s) 712
XmaI CCCGGG 1 cut(s) 746
XspI CTAG 2 cut(s) 698, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.