Rh7CG439000

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013496
Physical Location & Seq
Forward (+)
57473661 .. 57479702
6042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG439000.1

Sequence Viewer

Length: 828 bp
ATGGAATTGTGTATGGTTGTGATATTCCATACAGGAAATGATGACCACTCTATTCCAGAAGGAGATGGTGTAAAAGAAAACAACTCTGAAAAAAGCAAAGACACTTCTTCCCAGAAAAGTTATCATACAAATTTGGATTGGAGAGAGGTCAGAGCAATGTTTATTCGCAGGGAGCAGGCTGAATCTGATCCTCAGTACCAGTCGAAACCTCTTGGCGAGAAGTGGGCTCATCCCCTTGCAGTACCTGAGACAGGCTGTATCCTCGTTGCAACAGAAAAGCTTGATGGAGTGCGCACCTTTGAAAGAACTGTTGTTCTCCTCCTTCGATCAGGAAACAGACACCCAGAAGAGGGACCATTTGGTGTTGTTATCAACAGGCCACTACACAAAAAGATTAAACACATGAGACCCACAAATCTTGATCTTGCAACCACATTCTCTGATTGCTCTCTGCATTTTGGTGGGCCTCTAGAGGCAAGCATGTTCTTGTTGAAAACAGGGGGAAGGTCAAAGCTTCCCGGGTTTGAAGAGGTGATCCCTGGTCTTTGTTTTGGTGCTCGTAACAGTCTGGATGAAGCTGCTGGTCTAGTGAAGAAAGGGCTTCTTAAGCCTCAAGATTTCAGATTTTTTGTTGGCTATGCAGGGTGGCAGCTGGACCAGTTGACAGAGGAGATTGAATCCGATTACTGGTATGTGGCTGCTTGCAGCCCTAATTTGATATATGGAGCTTCATCAGATTCTTCGTCAGAAAGTTTGTGGGAGGAAATCCTGCAGCTAATGGGTGGCCAGTATTCTGAATTGAGTCGAAAGCCTAAGCAAGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

275

Amino Acids

30.85

Weight (kDa)

5.55

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 99 - 261 4.2e-31 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33780
fragaria_vesca FvH4_5g33090
malus_domestica MD08G1215000.v1.1 MD15G1398000.v1.1
prunus_persica Prupe.1G546400_v2.0.a1
pyrus_communis pycom08g18590 pycom15g35770
rosa_chinensis RchiOBHm_Chr7g0231261
rosa_laevigata RLG00000001423
rosa_multiflora Rmu_sc0003396.1_g000004
rosa_roxburghii Rroxscaffold_3G00229370
rosa_rugosa Rorug07G0265600 Rorug07G0265600
rosa_samantha Rh7AG419300 Rh7BG394500 Rh7CG439000 Rh7DG412900
rosa_wichuraiana Rw7G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 293
AclWI GGATC 2 cut(s) 182, 529
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 2 cut(s) 197, 243
AfiI CCNNNNNNNGG 4 cut(s) 251, 349, 350, 687
AflII CTTAAG 1 cut(s) 605
AgsI TTSAA 4 cut(s) 302, 493, 527, 677
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 6 cut(s) 280, 514, 578, 652, 728, 775
AluI AGCT 6 cut(s) 280, 514, 578, 652, 728, 775
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 2 cut(s) 242, 400
AlwI GGATC 2 cut(s) 182, 529
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 3 cut(s) 377, 464, 784
ApeKI GCWGC 5 cut(s) 578, 649, 698, 705, 772
ApoI RAATTY 1 cut(s) 130
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 3 cut(s) 353, 464, 655
AsuC2I CCSGG 2 cut(s) 519, 520
AsuHPI GGTGA 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 2 cut(s) 353, 655
BalI TGGCCA 1 cut(s) 786
BanII GRGCYC 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 5 cut(s) 565, 661, 685, 717, 784
BccI CCATC 2 cut(s) 59, 278
BciT130I CCWGG 1 cut(s) 540
BciVI GTATCC 1 cut(s) 269
BcnI CCSGG 2 cut(s) 519, 520
BcoDI GTCTC 2 cut(s) 242, 400
BfaI CTAG 2 cut(s) 470, 587
BfmI CTRYAG 1 cut(s) 770
BfrI CTTAAG 1 cut(s) 605
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 5 cut(s) 579, 650, 699, 706, 773
BlsI GCNGC 5 cut(s) 580, 651, 700, 707, 774
Bme1390I CCNGG 3 cut(s) 519, 520, 540
Bme18I GGWCC 2 cut(s) 353, 655
BmeT110I CYCGRG 1 cut(s) 518
BmgT120I GGNCC 3 cut(s) 353, 464, 655
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 3 cut(s) 519, 520, 540
Bpu10I CCTNAGC 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 597
BpuMI CCSGG 2 cut(s) 519, 520
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 518, 538
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 349, 350, 687
Bse1I ACTGG 4 cut(s) 199, 658, 692, 787
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 2 cut(s) 518, 538
BseGI GGATG 2 cut(s) 229, 577
BseLI CCNNNNNNNGG 4 cut(s) 251, 349, 350, 687
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 2 cut(s) 206, 237
BseNI ACTGG 4 cut(s) 199, 658, 692, 787
BseRI GAGGAG 2 cut(s) 308, 683
BseXI GCAGC 5 cut(s) 565, 661, 685, 717, 784
BshFI GGCC 3 cut(s) 379, 466, 786
BsiHKAI GWGCWC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 4 cut(s) 251, 349, 350, 687
BsmAI GTCTC 2 cut(s) 242, 400
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 3 cut(s) 379, 466, 786
Bso31I GGTCTC 1 cut(s) 400
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 229, 559
Bsp143I GATC 4 cut(s) 187, 326, 421, 534
BspANI GGCC 3 cut(s) 379, 466, 786
BspCNI CTCAG 2 cut(s) 205, 238
BspLI GGNNCC 1 cut(s) 354
BspMAI CTGCAG 1 cut(s) 774
BspPI GGATC 2 cut(s) 182, 529
BspTI CTTAAG 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 4 cut(s) 199, 658, 692, 787
BssECI CCNNGG 2 cut(s) 518, 538
BssMI GATC 4 cut(s) 187, 326, 421, 534
Bst2UI CCWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 310, 566
Bst6I CTCTTC 2 cut(s) 342, 522
BstAFI CTTAAG 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 177, 478, 703
BstDEI CTNAG 3 cut(s) 192, 246, 813
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 229, 577
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 4 cut(s) 190, 329, 424, 537
BstMAI GTCTC 2 cut(s) 242, 400
BstMBI GATC 4 cut(s) 187, 326, 421, 534
BstMWI GCNNNNNNNGC 1 cut(s) 607
BstNI CCWGG 1 cut(s) 540
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 3 cut(s) 517, 518, 538
BstSFI CTRYAG 1 cut(s) 770
BstV1I GCAGC 5 cut(s) 565, 661, 685, 717, 784
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 3 cut(s) 379, 466, 786
BtsCI GGATG 2 cut(s) 229, 577
Cac8I GCNNGC 3 cut(s) 177, 478, 703
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 3 cut(s) 353, 464, 655
Cfr9I CCCGGG 1 cut(s) 518
Csp6I GTAC 2 cut(s) 196, 242
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 2 cut(s) 403, 481
CviQI GTAC 2 cut(s) 196, 242
DdeI CTNAG 3 cut(s) 192, 246, 813
DpnI GATC 4 cut(s) 189, 328, 423, 536
DpnII GATC 4 cut(s) 187, 326, 421, 534
EaeI YGGCCR 1 cut(s) 784
Eam1104I CTCTTC 2 cut(s) 342, 522
EarI CTCTTC 2 cut(s) 342, 522
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 353, 655
Eco88I CYCGRG 1 cut(s) 518
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 538
EcoT38I GRGCYC 1 cut(s) 229
FaeI CATG 2 cut(s) 406, 484
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 402, 480
Fnu4HI GCNGC 5 cut(s) 579, 650, 699, 706, 773
FokI GGATG 2 cut(s) 216, 584
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 5 cut(s) 579, 650, 699, 706, 773
FspAI RTGCGCAY 1 cut(s) 293
FspBI CTAG 2 cut(s) 470, 587
FspI TGCGCA 1 cut(s) 293
GlaI GCGC 1 cut(s) 293
GluI GCNGC 5 cut(s) 579, 650, 699, 706, 773
HaeIII GGCC 3 cut(s) 379, 466, 786
HapII CCGG 1 cut(s) 519
HhaI GCGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 406, 484
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HindIII AAGCTT 2 cut(s) 278, 512
HinfI GANTC 4 cut(s) 182, 677, 737, 802
HpaII CCGG 1 cut(s) 519
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 9 cut(s) 88, 152, 187, 442, 623, 682, 736, 748, 796
Hpy188III TCNNGA 6 cut(s) 56, 330, 419, 470, 569, 614
Hpy8I GTNNAC 1 cut(s) 663
HpyAV CCTTC 3 cut(s) 53, 332, 498
HpyCH4III ACNGT 2 cut(s) 310, 566
HpyCH4V TGCA 7 cut(s) 239, 269, 428, 454, 641, 705, 772
HpyF10VI GCNNNNNNNGC 1 cut(s) 607
HpyF3I CTNAG 3 cut(s) 192, 246, 813
Hsp92II CATG 2 cut(s) 406, 484
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 4 cut(s) 187, 326, 421, 534
LmnI GCTCC 2 cut(s) 172, 725
Lsp1109I GCAGC 5 cut(s) 565, 661, 685, 717, 784
MaeI CTAG 2 cut(s) 470, 587
MaeIII GTNAC 1 cut(s) 560
MalI GATC 4 cut(s) 189, 328, 423, 536
MboI GATC 4 cut(s) 187, 326, 421, 534
MboII GAAGA 5 cut(s) 99, 359, 539, 604, 732
MhlI GDGCHC 2 cut(s) 229, 559
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 4 cut(s) 5, 130, 712, 797
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 1 cut(s) 811
Mox20I TGGCCA 1 cut(s) 786
MscI TGGCCA 1 cut(s) 786
MseI TTAA 2 cut(s) 396, 606
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 652
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 3 cut(s) 519, 520, 540
MvaI CCWGG 1 cut(s) 540
MwoI GCNNNNNNNGC 1 cut(s) 607
NciI CCSGG 2 cut(s) 519, 520
NdeII GATC 4 cut(s) 187, 326, 421, 534
NlaIII CATG 2 cut(s) 406, 484
NlaIV GGNNCC 1 cut(s) 354
NsbI TGCGCA 1 cut(s) 293
NspI RCATGY 1 cut(s) 484
PfeI GAWTC 3 cut(s) 182, 677, 737
PkrI GCNGC 5 cut(s) 580, 651, 700, 707, 774
PleI GAGTC 1 cut(s) 810
PpsI GAGTC 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 3 cut(s) 353, 464, 655
PstI CTGCAG 1 cut(s) 774
PstNI CAGNNNCTG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 2 cut(s) 197, 243
RsaNI GTAC 2 cut(s) 196, 242
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 396, 606
SatI GCNGC 5 cut(s) 579, 650, 699, 706, 773
Sau3AI GATC 4 cut(s) 187, 326, 421, 534
Sau96I GGNCC 3 cut(s) 353, 464, 655
SchI GAGTC 1 cut(s) 811
ScrFI CCNGG 3 cut(s) 519, 520, 540
SduI GDGCHC 2 cut(s) 229, 559
SfcI CTRYAG 1 cut(s) 770
SinI GGWCC 2 cut(s) 353, 655
SmaI CCCGGG 1 cut(s) 520
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 2 cut(s) 605, 612
SmoI CTYRAG 2 cut(s) 605, 612
Sse9I AATT 4 cut(s) 5, 130, 712, 797
SspMI CTAG 2 cut(s) 470, 587
StyD4I CCNGG 3 cut(s) 517, 518, 538
TaaI ACNGT 2 cut(s) 310, 566
TaqI TCGA 3 cut(s) 203, 325, 805
TasI AATT 4 cut(s) 5, 130, 712, 797
TfiI GAWTC 3 cut(s) 182, 677, 737
Tru1I TTAA 2 cut(s) 396, 606
Tru9I TTAA 2 cut(s) 396, 606
TseI GCWGC 5 cut(s) 578, 649, 698, 705, 772
TspDTI ATGAA 2 cut(s) 588, 720
TspMI CCCGGG 1 cut(s) 518
Vha464I CTTAAG 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 353, 655
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 130
XbaI TCTAGA 1 cut(s) 469
XceI RCATGY 1 cut(s) 484
XmaI CCCGGG 1 cut(s) 518
XspI CTAG 2 cut(s) 470, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.