Rmu_sc0003396.1_g000004

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003396.1
OG0013496
Physical Location & Seq
Forward (+)
30146 .. 32051
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003396.1_g000004.1.cds

Sequence Viewer

Length: 816 bp
atggttgtgatattccatacaggaaatgatgaccactctattccagaaggagatggtgtaaaagaaaacaactctgaaaaaagcaaagacacttcttcccagaaaagttatcatacaaatttggattggagagaggtcagagcaatgtttattcgcagggagcaggctgaatctgatcctcagtaccagttgaaacctcttggcgagaagtgggctcatccccttgcagtacctgagacaggctgtatcctcgttgcaacagaaaagcttgacggagtgcgcacctttgaaagaactgttgttctcctcctccgatcaggaaacagacacccagaagagggaccatttggtgttgttatcaacaggccactacacaaaaagattaaacacatgagacccacaaatcttgatcttgcaaccacattctctgattgctctctgcattttggtgggcctctagaggcaagcatgttcttgttgaaaacagggggaaggtcaaagcttcccgggtttgaagaggtgatccctggtctttgttttggcgctcgtaacagtctggatgaagctgctggtctagtgaagaaagggcttcttaagcctcaagatttcagattttttgttggctatgcagggtggcagctggaccagttgacagaggagattgaatccgattactggtatgtggctgcttgcagccctaatttgatatatggagcttcatcagattcttcgtcagaaagtttgtgggaggaaatcctgcagctaatgggtggccagtattctgaattgagtcgaaagcctaagcaagatatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

271

Amino Acids

30.4

Weight (kDa)

5.67

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33780
fragaria_vesca FvH4_5g33090
malus_domestica MD08G1215000.v1.1 MD15G1398000.v1.1
prunus_persica Prupe.1G546400_v2.0.a1
pyrus_communis pycom08g18590 pycom15g35770
rosa_chinensis RchiOBHm_Chr7g0231261
rosa_laevigata RLG00000001423
rosa_multiflora Rmu_sc0003396.1_g000004
rosa_roxburghii Rroxscaffold_3G00229370
rosa_rugosa Rorug07G0265600 Rorug07G0265600
rosa_samantha Rh7AG419300 Rh7BG394500 Rh7CG439000 Rh7DG412900
rosa_wichuraiana Rw7G034660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 281
AclWI GGATC 2 cut(s) 170, 517
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 2 cut(s) 185, 231
AfiI CCNNNNNNNGG 4 cut(s) 239, 337, 338, 675
AflII CTTAAG 1 cut(s) 593
AgsI TTSAA 5 cut(s) 193, 290, 481, 515, 665
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 6 cut(s) 268, 502, 566, 640, 716, 763
AluI AGCT 6 cut(s) 268, 502, 566, 640, 716, 763
Alw26I GTCTC 2 cut(s) 230, 388
AlwI GGATC 2 cut(s) 170, 517
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 3 cut(s) 365, 452, 772
ApeKI GCWGC 5 cut(s) 566, 637, 686, 693, 760
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 2 cut(s) 282, 545
AspS9I GGNCC 3 cut(s) 341, 452, 643
AsuC2I CCSGG 2 cut(s) 507, 508
AsuHPI GGTGA 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 2 cut(s) 341, 643
BalI TGGCCA 1 cut(s) 774
BanII GRGCYC 1 cut(s) 217
BbvI GCAGC 5 cut(s) 553, 649, 673, 705, 772
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 528
BciVI GTATCC 1 cut(s) 257
BcnI CCSGG 2 cut(s) 507, 508
BcoDI GTCTC 2 cut(s) 230, 388
BfaI CTAG 2 cut(s) 458, 575
BfmI CTRYAG 1 cut(s) 758
BfoI RGCGCY 1 cut(s) 546
BfrI CTTAAG 1 cut(s) 593
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 5 cut(s) 567, 638, 687, 694, 761
BlsI GCNGC 5 cut(s) 568, 639, 688, 695, 762
Bme1390I CCNGG 3 cut(s) 507, 508, 528
Bme18I GGWCC 2 cut(s) 341, 643
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 3 cut(s) 341, 452, 643
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 3 cut(s) 507, 508, 528
Bpu10I CCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 585
BpuMI CCSGG 2 cut(s) 507, 508
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 506, 526
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 337, 338, 675
Bse1I ACTGG 4 cut(s) 187, 646, 680, 775
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 2 cut(s) 506, 526
BseGI GGATG 2 cut(s) 217, 565
BseLI CCNNNNNNNGG 4 cut(s) 239, 337, 338, 675
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 194, 225
BseNI ACTGG 4 cut(s) 187, 646, 680, 775
BseRI GAGGAG 3 cut(s) 296, 299, 671
BseXI GCAGC 5 cut(s) 553, 649, 673, 705, 772
BshFI GGCC 3 cut(s) 367, 454, 774
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 1 cut(s) 507
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 4 cut(s) 239, 337, 338, 675
BsmAI GTCTC 2 cut(s) 230, 388
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 3 cut(s) 367, 454, 774
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 175, 314, 409, 522
BspANI GGCC 3 cut(s) 367, 454, 774
BspCNI CTCAG 2 cut(s) 193, 226
BspLI GGNNCC 1 cut(s) 342
BspMAI CTGCAG 1 cut(s) 762
BspPI GGATC 2 cut(s) 170, 517
BspTI CTTAAG 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 388
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 4 cut(s) 187, 646, 680, 775
BssECI CCNNGG 2 cut(s) 506, 526
BssMI GATC 4 cut(s) 175, 314, 409, 522
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 298, 554
Bst6I CTCTTC 2 cut(s) 330, 510
BstAFI CTTAAG 1 cut(s) 593
BstC8I GCNNGC 3 cut(s) 165, 466, 691
BstDEI CTNAG 3 cut(s) 180, 234, 801
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 217, 565
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 2 cut(s) 282, 545
BstKTI GATC 4 cut(s) 178, 317, 412, 525
BstMAI GTCTC 2 cut(s) 230, 388
BstMBI GATC 4 cut(s) 175, 314, 409, 522
BstMWI GCNNNNNNNGC 1 cut(s) 595
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 3 cut(s) 505, 506, 526
BstSFI CTRYAG 1 cut(s) 758
BstV1I GCAGC 5 cut(s) 553, 649, 673, 705, 772
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 3 cut(s) 367, 454, 774
BtsCI GGATG 2 cut(s) 217, 565
Cac8I GCNNGC 3 cut(s) 165, 466, 691
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 2 cut(s) 282, 545
Cfr13I GGNCC 3 cut(s) 341, 452, 643
Cfr9I CCCGGG 1 cut(s) 506
Csp6I GTAC 2 cut(s) 184, 230
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 2 cut(s) 391, 469
CviQI GTAC 2 cut(s) 184, 230
DdeI CTNAG 3 cut(s) 180, 234, 801
DpnI GATC 4 cut(s) 177, 316, 411, 524
DpnII GATC 4 cut(s) 175, 314, 409, 522
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 2 cut(s) 330, 510
EarI CTCTTC 2 cut(s) 330, 510
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 341, 643
Eco88I CYCGRG 1 cut(s) 506
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 2 cut(s) 394, 472
FaiI YATR 9 cut(s) 18, 114, 392, 470, 627, 681, 709, 711, 812
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 1 cut(s) 354
FatI CATG 2 cut(s) 390, 468
Fnu4HI GCNGC 5 cut(s) 567, 638, 687, 694, 761
FokI GGATG 2 cut(s) 204, 572
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 567, 638, 687, 694, 761
FspAI RTGCGCAY 1 cut(s) 281
FspBI CTAG 2 cut(s) 458, 575
FspI TGCGCA 1 cut(s) 281
GlaI GCGC 2 cut(s) 281, 544
GluI GCNGC 5 cut(s) 567, 638, 687, 694, 761
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 3 cut(s) 367, 454, 774
HapII CCGG 1 cut(s) 507
HhaI GCGC 2 cut(s) 282, 545
Hin1II CATG 2 cut(s) 394, 472
Hin6I GCGC 2 cut(s) 280, 543
HinP1I GCGC 2 cut(s) 280, 543
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 2 cut(s) 266, 500
HinfI GANTC 4 cut(s) 170, 665, 725, 790
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 651
Hpy188III TCNNGA 6 cut(s) 44, 318, 407, 458, 557, 602
Hpy8I GTNNAC 1 cut(s) 651
HpyAV CCTTC 2 cut(s) 41, 486
HpyCH4III ACNGT 2 cut(s) 298, 554
HpyCH4V TGCA 7 cut(s) 227, 257, 416, 442, 629, 693, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 595
HpyF3I CTNAG 3 cut(s) 180, 234, 801
Hsp92II CATG 2 cut(s) 394, 472
HspAI GCGC 2 cut(s) 280, 543
Kzo9I GATC 4 cut(s) 175, 314, 409, 522
LmnI GCTCC 2 cut(s) 160, 713
Lsp1109I GCAGC 5 cut(s) 553, 649, 673, 705, 772
MaeI CTAG 2 cut(s) 458, 575
MaeIII GTNAC 1 cut(s) 548
MalI GATC 4 cut(s) 177, 316, 411, 524
MboI GATC 4 cut(s) 175, 314, 409, 522
MboII GAAGA 5 cut(s) 87, 347, 527, 592, 720
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 3 cut(s) 118, 700, 785
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 1 cut(s) 799
Mox20I TGGCCA 1 cut(s) 774
MscI TGGCCA 1 cut(s) 774
MseI TTAA 2 cut(s) 384, 594
MslI CAYNNNNRTG 1 cut(s) 447
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 640
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 3 cut(s) 507, 508, 528
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 595
NciI CCSGG 2 cut(s) 507, 508
NdeII GATC 4 cut(s) 175, 314, 409, 522
NlaIII CATG 2 cut(s) 394, 472
NlaIV GGNNCC 1 cut(s) 342
NsbI TGCGCA 1 cut(s) 281
NspI RCATGY 1 cut(s) 472
PfeI GAWTC 3 cut(s) 170, 665, 725
PkrI GCNGC 5 cut(s) 568, 639, 688, 695, 762
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 3 cut(s) 341, 452, 643
PstI CTGCAG 1 cut(s) 762
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 640
RsaI GTAC 2 cut(s) 185, 231
RsaNI GTAC 2 cut(s) 184, 230
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 2 cut(s) 384, 594
SatI GCNGC 5 cut(s) 567, 638, 687, 694, 761
Sau3AI GATC 4 cut(s) 175, 314, 409, 522
Sau96I GGNCC 3 cut(s) 341, 452, 643
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 3 cut(s) 507, 508, 528
SduI GDGCHC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 758
SinI GGWCC 2 cut(s) 341, 643
SmaI CCCGGG 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 593, 600
SmoI CTYRAG 2 cut(s) 593, 600
Sse9I AATT 3 cut(s) 118, 700, 785
SspMI CTAG 2 cut(s) 458, 575
StyD4I CCNGG 3 cut(s) 505, 506, 526
TaaI ACNGT 2 cut(s) 298, 554
TaqI TCGA 1 cut(s) 793
TasI AATT 3 cut(s) 118, 700, 785
TfiI GAWTC 3 cut(s) 170, 665, 725
Tru1I TTAA 2 cut(s) 384, 594
Tru9I TTAA 2 cut(s) 384, 594
TseI GCWGC 5 cut(s) 566, 637, 686, 693, 760
TspDTI ATGAA 2 cut(s) 576, 708
TspGWI ACGGA 1 cut(s) 288
TspMI CCCGGG 1 cut(s) 506
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 341, 643
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 1 cut(s) 472
XmaI CCCGGG 1 cut(s) 506
XspI CTAG 2 cut(s) 458, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.