RLG00000001089

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004669
Physical Location & Seq
Reverse (-)
10248850 .. 10252390
3541 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001089

Sequence Viewer

Length: 1752 bp
ATGGCTACCAATGCAGAATTTAAAGGTGTTTCAAAATGCTATGTATTCAAGAGCCGGTTGCAAGAGTATGCACAGAAAATGGGAATAAAGACACCAGTATATGAGACTACAAAAGAAGGTCCTTCACATGAGCCTTCCTTCAGGTCTACTGTGATATTAAATGATGTTAGATACGACTCTTTGCTTGGGTTTACTAATCGTAAGGCAGCTGAACAGTCAGCTGCTGAAGTTGCTCTGGTGGAGTTATCTAAATCTGGTGATGCTGCACAATGCATCTCTCAACCTGTTCATGAAATTGGCTTATGCAAAAATCTGCTTCAAGAGTATGCACAGAAGATGAATTATGCTGTTCCTGTATATCAGTGTCAGAGGGATACTTCTTCTAGCAAAGTACCACTGTATTCATCTACTGTCGAGATTGGGGGAATTCGTTATATTGGAGCTGCAGCAACAACCAAAAAGGAAGCTGAGATAAAAGTGGCTAGAACTGCTCTTCTAGCTCTCTTGTTAAGTGATACTGAGTCATCCATGGGATCAGTTGGCAGCTCTGAGTTAACAGTGCTTCCATCTAAAAGAAAGCGATCAGAATGTGAAGAGATTTCTAATGAACCTAAACCAAAGAAACCCCCATATAAGAGGAGAATGTTCAAAAAGAAAGCCTATGAAGAAAAGGTGGGCCAGACGGAAGTTGGAAATATAGCACCAGGATCAGAGAGTAATGAATCCGTTAAGCCAATGACTACAGAAGCTATGCCACAAGAGCCAGTGTCTGAGGATGGGCCGTCAATAGCTTCAGATTTCACCAACAGCAGCATTGTGAGTGGGAATGTGGGTTCAGTTTCACTGTCCTGTGGAAACATAACTGCTATGGCCAAGGAAGTGGATATGGTGTCTGCTGTTAAGCCAATGACTGCAGAAGCTTTGCCACAAGACTCAGTGTCCGAGTATATTACCTGTGCTAATAATGTCAACGCTGAACTTGGGCTGGCAACAGCTTCAGATTTCACCAACAGCAGCAATGGAAGTGGGGATGTGGGTTCAGTTTCACTGTCCTGTGGAAACACAACTGCTTCGGGTAAGGAAGTGAATATGGTGTCTTCTGTTAAGCCAATGACTGCAGGAACTATGCCACAAGATTCAGTGTCTGAGGATATTCCACATGCTAATAATGTCAATGCTGAACATGGGCTGTCAACAGCTTCAGATTTCACCAACAGCAGCAATGGGAGTGGAGATGTGGGTTCAGTTTCACTGCCCTCTGGAAACATAACTACTTTGGCCAAGGAAGCGTGTATGGTGTCTGCCGTTAAGCCAATGACTGCAGAAGCTATGCCACAAGACTCAGTGTCTGAGGATATTCCCCATGCTAATAATGTTAATGCTAAGCCGTCAACAGCTTCAGATTTCACCAACGGCAGCAATGGGAGTTGGGATGTGGATTCAGTTTCACTGTCCTGCGGAAACACAACTACTTCGGCCAAGGAAGTGAATGTGGTTGCTGCTGTTAAGCCAGTGTCTGCAGAAATGATGCCACAAGATTCGGTGTCTGAGGATATTCCCCATGCTAATAATGTGAATGCTGAACGTGGGCCGTCAGCAGCTTCAGATTTCACCAACGGCAGCAGTGTGAGTGGGGATGTTGGTTCAGTATCACTGTCCTGTGGAGACACAACTACTCTGGCCAAGGAAGTGAATATGGTGTCGGCTGGACCTTGTTTGGAGGCTTCAAGTGTCATGCCTGGACCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006379 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009892 GO:0009954 GO:0009987 GO:0010033 GO:0010051 GO:0010267 GO:0010305 GO:0010445 GO:0010467 GO:0010468 GO:0010589 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0031974 GO:0031981 GO:0032296 GO:0032501 GO:0032502 GO:0033993 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0035198 GO:0035279 GO:0040029 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097305 GO:0098795 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

584

Amino Acids

60.86

Weight (kDa)

4.85

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 17 - 79 3.2e-16 Double-stranded RNA binding motif
dsrm PF00035 103 - 167 5.6e-13 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 146
AciI CCGC 1 cut(s) 1458
AclWI GGATC 2 cut(s) 541, 715
AcoI YGGCCR 4 cut(s) 870, 1278, 1476, 1680
AcsI RAATTY 2 cut(s) 17, 426
AcuI CTGAAG 7 cut(s) 124, 246, 777, 981, 1185, 1383, 1587
AfaI GTAC 1 cut(s) 393
AgsI TTSAA 5 cut(s) 33, 49, 320, 649, 1728
AhdI GACNNNNNGTC 2 cut(s) 937, 1345
AjnI CCWGG 2 cut(s) 703, 1738
AloI GAACNNNNNNTCC 2 cut(s) 817, 849
Alw26I GTCTC 2 cut(s) 98, 1659
AlwI GGATC 2 cut(s) 541, 715
AlwNI CAGNNNCTG 5 cut(s) 224, 770, 1145, 1349, 1517
AoxI GGCC 7 cut(s) 676, 779, 870, 1278, 1476, 1589, 1680
ApoI RAATTY 2 cut(s) 17, 426
AspS9I GGNCC 6 cut(s) 119, 676, 779, 1589, 1709, 1742
AsuHPI GGTGA 6 cut(s) 269, 793, 997, 1201, 1399, 1603
AvaII GGWCC 3 cut(s) 119, 1709, 1742
BalI TGGCCA 3 cut(s) 872, 1280, 1682
BbsI GAAGAC 1 cut(s) 1089
BccI CCATC 2 cut(s) 574, 770
BceAI ACGGC 6 cut(s) 766, 1289, 1372, 1429, 1576, 1633
BciT130I CCWGG 2 cut(s) 705, 1740
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 2 cut(s) 98, 1659
BfaI CTAG 3 cut(s) 384, 483, 497
BfmI CTRYAG 6 cut(s) 444, 741, 912, 1116, 1320, 1518
BfuI GTATCC 1 cut(s) 367
BlpI GCTNAGC 1 cut(s) 1383
Bme1390I CCNGG 2 cut(s) 705, 1740
Bme18I GGWCC 3 cut(s) 119, 1709, 1742
BmeRI GACNNNNNGTC 2 cut(s) 937, 1345
BmgT120I GGNCC 6 cut(s) 119, 676, 779, 1589, 1709, 1742
BmrFI CCNGG 2 cut(s) 705, 1740
BmsI GCATC 3 cut(s) 250, 282, 1518
BpiI GAAGAC 1 cut(s) 1089
Bpu1102I GCTNAGC 1 cut(s) 1383
BsaJI CCNNGG 5 cut(s) 528, 873, 1281, 1479, 1683
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 3 cut(s) 95, 764, 1511
Bse3DI GCAATG 3 cut(s) 1024, 1228, 1426
BseBI CCWGG 2 cut(s) 705, 1740
BseDI CCNNGG 5 cut(s) 528, 873, 1281, 1479, 1683
BseGI GGATG 5 cut(s) 524, 781, 1036, 1438, 1642
BseMI GCAATG 3 cut(s) 1024, 1228, 1426
BseMII CTCAG 9 cut(s) 459, 510, 540, 762, 948, 1137, 1341, 1356, 1539
BseNI ACTGG 3 cut(s) 95, 764, 1511
BseRI GAGGAG 1 cut(s) 652
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 7 cut(s) 678, 781, 872, 1280, 1478, 1591, 1682
BsiSI CCGG 1 cut(s) 55
BsmAI GTCTC 2 cut(s) 98, 1659
BsmI GAATGC 1 cut(s) 1582
BsnI GGCC 7 cut(s) 678, 781, 872, 1280, 1478, 1591, 1682
Bsp143I GATC 3 cut(s) 533, 581, 707
Bsp1720I GCTNAGC 1 cut(s) 1383
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 1 cut(s) 1458
BspANI GGCC 7 cut(s) 678, 781, 872, 1280, 1478, 1591, 1682
BspCNI CTCAG 9 cut(s) 460, 511, 541, 763, 947, 1138, 1342, 1355, 1540
BspHI TCATGA 1 cut(s) 289
BspMAI CTGCAG 5 cut(s) 448, 916, 1120, 1324, 1522
BspPI GGATC 2 cut(s) 541, 715
BspQI GCTCTTC 1 cut(s) 498
BsrDI GCAATG 3 cut(s) 1024, 1228, 1426
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 3 cut(s) 95, 764, 1511
BssAI RCCGGY 1 cut(s) 54
BssECI CCNNGG 5 cut(s) 528, 873, 1281, 1479, 1683
BssMI GATC 3 cut(s) 533, 581, 707
BssT1I CCWWGG 5 cut(s) 528, 873, 1281, 1479, 1683
Bst2UI CCWGG 2 cut(s) 705, 1740
Bst4CI ACNGT 9 cut(s) 151, 216, 399, 412, 559, 846, 1050, 1452, 1656
Bst6I CTCTTC 2 cut(s) 498, 588
BstC8I GCNNGC 1 cut(s) 987
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 5 cut(s) 524, 781, 1036, 1438, 1642
BstKTI GATC 3 cut(s) 536, 584, 710
BstMAI GTCTC 2 cut(s) 98, 1659
BstMBI GATC 3 cut(s) 533, 581, 707
BstMWI GCNNNNNNNGC 6 cut(s) 11, 230, 488, 497, 760, 1286
BstNI CCWGG 2 cut(s) 705, 1740
BstNSI RCATGY 1 cut(s) 1163
BstSCI CCNGG 2 cut(s) 703, 1738
BstSFI CTRYAG 6 cut(s) 444, 741, 912, 1116, 1320, 1518
BstV2I GAAGAC 1 cut(s) 1089
BstXI CCANNNNNNTGG 1 cut(s) 880
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 7 cut(s) 678, 781, 872, 1280, 1478, 1591, 1682
BtgI CCRYGG 1 cut(s) 528
BtsCI GGATG 5 cut(s) 524, 781, 1036, 1438, 1642
BtsI GCAGTG 2 cut(s) 1250, 1630
Cac8I GCNNGC 1 cut(s) 987
CaiI CAGNNNCTG 5 cut(s) 224, 770, 1145, 1349, 1517
CciI TCATGA 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 54
Cfr13I GGNCC 6 cut(s) 119, 676, 779, 1589, 1709, 1742
Csp6I GTAC 1 cut(s) 392
CspCI CAANNNNNGTGG 4 cut(s) 1006, 1041, 1210, 1245
CviAII CATG 8 cut(s) 128, 290, 529, 1160, 1184, 1364, 1562, 1735
CviQI GTAC 1 cut(s) 392
DpnI GATC 3 cut(s) 535, 583, 709
DpnII GATC 3 cut(s) 533, 581, 707
DraI TTTAAA 1 cut(s) 22
DriI GACNNNNNGTC 2 cut(s) 937, 1345
EaeI YGGCCR 4 cut(s) 870, 1278, 1476, 1680
Eam1104I CTCTTC 2 cut(s) 498, 588
Eam1105I GACNNNNNGTC 2 cut(s) 937, 1345
EarI CTCTTC 2 cut(s) 498, 588
Eco130I CCWWGG 5 cut(s) 528, 873, 1281, 1479, 1683
Eco47I GGWCC 3 cut(s) 119, 1709, 1742
Eco57I CTGAAG 7 cut(s) 124, 246, 777, 981, 1185, 1383, 1587
EcoO109I RGGNCCY 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 426
EcoRII CCWGG 2 cut(s) 703, 1738
EcoT14I CCWWGG 5 cut(s) 528, 873, 1281, 1479, 1683
EcoT22I ATGCAT 1 cut(s) 275
ErhI CCWWGG 5 cut(s) 528, 873, 1281, 1479, 1683
FaeI CATG 8 cut(s) 131, 293, 532, 1163, 1187, 1367, 1565, 1738
FatI CATG 8 cut(s) 127, 289, 528, 1159, 1183, 1363, 1561, 1734
FblI GTMKAC 1 cut(s) 146
FokI GGATG 5 cut(s) 511, 788, 1043, 1445, 1649
FspBI CTAG 3 cut(s) 384, 483, 497
HaeIII GGCC 7 cut(s) 678, 781, 872, 1280, 1478, 1591, 1682
HapII CCGG 1 cut(s) 55
Hin1II CATG 8 cut(s) 131, 293, 532, 1163, 1187, 1367, 1565, 1738
HincII GTYRAC 4 cut(s) 555, 970, 1194, 1392
HindII GTYRAC 4 cut(s) 555, 970, 1194, 1392
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 8 cut(s) 176, 521, 722, 932, 1136, 1340, 1439, 1538
HpaI GTTAAC 1 cut(s) 555
HpaII CCGG 1 cut(s) 55
HphI GGTGA 6 cut(s) 269, 793, 997, 1201, 1399, 1603
Hpy166II GTNNAC 6 cut(s) 147, 192, 555, 970, 1194, 1392
Hpy188III TCNNGA 5 cut(s) 49, 290, 320, 415, 1260
Hpy8I GTNNAC 6 cut(s) 147, 192, 555, 970, 1194, 1392
HpyAV CCTTC 4 cut(s) 110, 132, 144, 148
HpyCH4III ACNGT 9 cut(s) 151, 216, 399, 412, 559, 846, 1050, 1452, 1656
HpyCH4IV ACGT 1 cut(s) 1585
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 230, 488, 497, 760, 1286
HpySE526I ACGT 1 cut(s) 1585
Hsp92II CATG 8 cut(s) 131, 293, 532, 1163, 1187, 1367, 1565, 1738
KspAI GTTAAC 1 cut(s) 555
Kzo9I GATC 3 cut(s) 533, 581, 707
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 1 cut(s) 440
LweI GCATC 3 cut(s) 250, 282, 1518
MaeI CTAG 3 cut(s) 384, 483, 497
MaeII ACGT 1 cut(s) 1585
MalI GATC 3 cut(s) 535, 583, 709
MboI GATC 3 cut(s) 533, 581, 707
MboII GAAGA 6 cut(s) 346, 372, 485, 605, 677, 1089
MlsI TGGCCA 3 cut(s) 872, 1280, 1682
MluCI AATT 4 cut(s) 17, 294, 340, 426
MluNI TGGCCA 3 cut(s) 872, 1280, 1682
MlyI GAGTC 4 cut(s) 170, 530, 926, 1334
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 8 cut(s) 363, 630, 766, 1141, 1267, 1345, 1543, 1714
Mox20I TGGCCA 3 cut(s) 872, 1280, 1682
Mph1103I ATGCAT 1 cut(s) 275
MscI TGGCCA 3 cut(s) 872, 1280, 1682
Msp20I TGGCCA 3 cut(s) 872, 1280, 1682
MspA1I CMGCKG 2 cut(s) 209, 221
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 2 cut(s) 705, 1740
Mva1269I GAATGC 1 cut(s) 1582
MvaI CCWGG 2 cut(s) 705, 1740
MwoI GCNNNNNNNGC 6 cut(s) 11, 230, 488, 497, 760, 1286
NcoI CCATGG 1 cut(s) 528
NdeII GATC 3 cut(s) 533, 581, 707
NlaIII CATG 8 cut(s) 131, 293, 532, 1163, 1187, 1367, 1565, 1738
NsiI ATGCAT 1 cut(s) 275
NspI RCATGY 1 cut(s) 1163
PagI TCATGA 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 498
PctI GAATGC 1 cut(s) 1582
PfeI GAWTC 4 cut(s) 722, 1136, 1439, 1538
PleI GAGTC 4 cut(s) 170, 529, 926, 1334
PpsI GAGTC 4 cut(s) 170, 529, 926, 1334
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 703, 1738
PspGI CCWGG 2 cut(s) 703, 1738
PspPI GGNCC 6 cut(s) 119, 676, 779, 1589, 1709, 1742
PspPPI RGGWCCY 1 cut(s) 119
PstI CTGCAG 5 cut(s) 448, 916, 1120, 1324, 1522
PstNI CAGNNNCTG 5 cut(s) 224, 770, 1145, 1349, 1517
PvuII CAGCTG 2 cut(s) 209, 221
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 498
Sau3AI GATC 3 cut(s) 533, 581, 707
Sau96I GGNCC 6 cut(s) 119, 676, 779, 1589, 1709, 1742
SchI GAGTC 4 cut(s) 170, 530, 926, 1334
ScrFI CCNGG 2 cut(s) 705, 1740
SfaNI GCATC 3 cut(s) 250, 282, 1518
SfcI CTRYAG 6 cut(s) 444, 741, 912, 1116, 1320, 1518
SinI GGWCC 3 cut(s) 119, 1709, 1742
Sse9I AATT 4 cut(s) 17, 294, 340, 426
SsiI CCGC 1 cut(s) 1458
SspMI CTAG 3 cut(s) 384, 483, 497
StyD4I CCNGG 2 cut(s) 703, 1738
StyI CCWWGG 5 cut(s) 528, 873, 1281, 1479, 1683
TaaI ACNGT 9 cut(s) 151, 216, 399, 412, 559, 846, 1050, 1452, 1656
TaiI ACGT 1 cut(s) 1588
TaqI TCGA 1 cut(s) 414
TasI AATT 4 cut(s) 17, 294, 340, 426
TfiI GAWTC 4 cut(s) 722, 1136, 1439, 1538
TspDTI ATGAA 7 cut(s) 278, 306, 353, 393, 621, 678, 735
TspGWI ACGGA 2 cut(s) 698, 715
VpaK11BI GGWCC 3 cut(s) 119, 1709, 1742
XapI RAATTY 2 cut(s) 17, 426
XceI RCATGY 1 cut(s) 1163
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 3 cut(s) 384, 483, 497
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.