Rorug07G0295900

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
29104202 .. 29108077
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0295900.1

Sequence Viewer

Length: 555 bp
ATGGGAGGCGCTGCCATCACTACCGAACCTGACTCTTCCAACTCCACGCTTCCGCTGCCTTCTCAGAAAAATGACGGCCAATCAGAGAATGTCAAAGAAGAAGAAGAAGAAGAGAAAGGTGAGTGTGGGTTTTGCTTATTCATGAAAGCAGGTCCGTGTGGAGAGAGATTCACAGCTTGGGAACAGTGCGTTAAAGAGTCTGAGAAGAACAAGGATTATGCTGCTGCAAAGTGTGTTGAGGTCTTCAAAACTTTGGATGAGTGTATGAAGGAGAATCAAGATTACTATGATTTTTTCTTGAAGGCCGAGAAAGCAGAATTGGAGAAGGAAGAGGATTTGATGAGTCAGAGCTCAGAGCACAAAGCCAGTTCAATTGGGGATTCTACTGACAAGCAAGAAGAAAGATCATCAACATACTCTCTGGTTCCCAAATCATCTTCAGCGAGGAGTTGCACGCCACATCCACTGGATCCAAAGTGCGGAAGCAAAGGAATCTCTTCTACTCTCTCATCTTTGTACGTGGTCGTCCTAAGTGGGAGGAACATAGCAGCATAA

Protein Analysis

184

Amino Acids

20.18

Weight (kDa)

4.73

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCK PF07802 40 - 109 3.5e-24 GCK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24510
fragaria_vesca FvH4_5g34840 FvH4_5g34850
malus_domestica MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica Prupe.1G533000_v2.0.a1
pyrus_communis pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
AciI CCGC 2 cut(s) 53, 480
AclWI GGATC 2 cut(s) 464, 477
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 3 cut(s) 247, 301, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 2 cut(s) 176, 351
AluI AGCT 2 cut(s) 176, 351
Alw21I GWGCWC 2 cut(s) 353, 360
AlwI GGATC 2 cut(s) 464, 477
AoxI GGCC 2 cut(s) 76, 303
ApeKI GCWGC 5 cut(s) 11, 55, 221, 224, 548
Asp700I GAANNNNTTC 1 cut(s) 496
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 152
BamHI GGATCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 353, 360
BbvI GCAGC 3 cut(s) 42, 208, 211
BccI CCATC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 140
BisI GCNGC 5 cut(s) 12, 56, 222, 225, 549
BlsI GCNGC 5 cut(s) 13, 57, 223, 226, 550
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 426, 471
BpiI GAAGAC 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 520
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 366, 471
BseGI GGATG 2 cut(s) 262, 460
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMII CTCAG 3 cut(s) 77, 192, 366
BseNI ACTGG 2 cut(s) 366, 471
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 3 cut(s) 42, 208, 211
BshFI GGCC 2 cut(s) 78, 305
BsiHKAI GWGCWC 2 cut(s) 353, 360
BslI CCNNNNNNNGG 1 cut(s) 479
BsnI GGCC 2 cut(s) 78, 305
Bsp1286I GDGCHC 2 cut(s) 353, 360
Bsp143I GATC 2 cut(s) 404, 469
BspACI CCGC 2 cut(s) 53, 480
BspANI GGCC 2 cut(s) 78, 305
BspCNI CTCAG 3 cut(s) 76, 193, 365
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 426, 471
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 2 cut(s) 464, 477
BsrI ACTGG 2 cut(s) 366, 471
BssMI GATC 2 cut(s) 404, 469
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 4 cut(s) 40, 105, 324, 502
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 4 cut(s) 63, 201, 352, 530
BstF5I GGATG 2 cut(s) 262, 460
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 407, 472
BstMBI GATC 2 cut(s) 404, 469
BstMWI GCNNNNNNNGC 2 cut(s) 55, 311
BstV1I GCAGC 3 cut(s) 42, 208, 211
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 2 cut(s) 78, 305
BtsCI GGATG 2 cut(s) 262, 460
BtsIMutI CAGTG 2 cut(s) 191, 464
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 455
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 517
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 78, 176, 305, 351, 365
CviKI_1 RGCY 5 cut(s) 78, 176, 305, 351, 365
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 4 cut(s) 63, 201, 352, 530
DpnI GATC 2 cut(s) 406, 471
DpnII GATC 2 cut(s) 404, 469
EaeI YGGCCR 1 cut(s) 76
Eam1104I CTCTTC 4 cut(s) 40, 105, 324, 502
EarI CTCTTC 4 cut(s) 40, 105, 324, 502
Ecl136II GAGCTC 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 1 cut(s) 145
FaiI YATR 7 cut(s) 143, 219, 266, 288, 415, 545, 553
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 5 cut(s) 12, 56, 222, 225, 549
FokI GGATG 2 cut(s) 269, 447
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 5 cut(s) 12, 56, 222, 225, 549
GlaI GCGC 1 cut(s) 10
GluI GCNGC 5 cut(s) 12, 56, 222, 225, 549
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 78, 305
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 7 cut(s) 32, 168, 197, 274, 343, 380, 492
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 5 cut(s) 66, 85, 202, 348, 355
Hpy188III TCNNGA 3 cut(s) 142, 278, 298
HpyAV CCTTC 4 cut(s) 69, 262, 295, 319
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 2 cut(s) 227, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 311
HpyF3I CTNAG 4 cut(s) 63, 201, 352, 530
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 404, 469
LpnPI CCDG 5 cut(s) 42, 135, 379, 407, 452
Lsp1109I GCAGC 3 cut(s) 42, 208, 211
MaeII ACGT 1 cut(s) 519
MalI GATC 2 cut(s) 406, 471
MboI GATC 2 cut(s) 404, 469
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 353, 360
MluCI AATT 2 cut(s) 317, 372
MlyI GAGTC 3 cut(s) 26, 206, 352
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 4 cut(s) 232, 325, 438, 531
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 55
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 2 cut(s) 55, 311
NdeII GATC 2 cut(s) 404, 469
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 2 cut(s) 426, 471
NmeAIII GCCGAG 1 cut(s) 331
PagI TCATGA 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 4 cut(s) 168, 274, 380, 492
PkrI GCNGC 5 cut(s) 13, 57, 223, 226, 550
PleI GAGTC 3 cut(s) 26, 205, 351
PpsI GAGTC 3 cut(s) 26, 205, 351
Ppu21I YACGTR 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 426, 471
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 5 cut(s) 12, 56, 222, 225, 549
Sau3AI GATC 2 cut(s) 404, 469
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 3 cut(s) 26, 206, 352
SduI GDGCHC 2 cut(s) 353, 360
SetI ASST 7 cut(s) 31, 121, 154, 178, 243, 353, 522
SinI GGWCC 1 cut(s) 152
Sse9I AATT 2 cut(s) 317, 372
SsiI CCGC 2 cut(s) 53, 480
SstI GAGCTC 1 cut(s) 353
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 1 cut(s) 522
TasI AATT 2 cut(s) 317, 372
TfiI GAWTC 4 cut(s) 168, 274, 380, 492
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 2 cut(s) 191, 471
TseI GCWGC 5 cut(s) 11, 55, 221, 224, 548
TspDTI ATGAA 3 cut(s) 130, 158, 281
TspGWI ACGGA 1 cut(s) 144
TspRI CASTG 2 cut(s) 191, 471
VpaK11BI GGWCC 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.