Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000453

Physical Location & Seq

Genomic Coordinates Forward (+)

48224476 .. 48224928

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACTTGGCTATGAAGCTTCACTACATCAAAGGGATCTACTTTTTCAAAAGTGACGCAGTTAAGGGGCTTACGGTGAATGACTTAAAGAAGCCTATGTTCCAACTGCTCCAACTATACTTCGCCGTCTCTGGGAGAATTTGGAGATCCAGAACAAGCCGGCCTTTCCTCGTGTGTAACGACGATGGTGTAAGAACTGTGGAGGCATGTTGTGACGAAGCCATTGATGAATGGTTGGCCATGGCTGTGGAGGATGATTCTGTATTTGATGGCCTGGCTTATAATCAAGCACTTGGTGATCCTGATCTTGGTTTCTCTCCTTTGGTCTTTGTACAGGTAAAATCACTAGCTCATTACTCTGGTCAATTATGGAAATGGCCTCCACCAGTTTCAGAATTTCGCCTTCTTCCACTAACGATATTCGCTTGTTCGCGCCTCCACCATCAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016053 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

151

Amino Acids

17.12

Weight (kDa)

6.4

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	2 - 116	2e-12	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24510
fragaria_vesca	FvH4_5g34840 FvH4_5g34850
malus_domestica	MD08G1199200.v1.1 MD08G1199300.v1.1 MD15G1386300.v1.1 MD15G1386800.v1.1
prunus_persica	Prupe.1G533000_v2.0.a1
pyrus_communis	pycom08g17310 pycom15g34640 pycom15g34680
rosa_chinensis	RchiOBHm_Chr1g0364531 RchiOBHm_Chr4g0415781 RchiOBHm_Chr7g0232591 RchiOBHm_Chr7g0235521 RchiOBHm_Chr7g0235551 RchiOBHm_Chr7g0235561 RchiOBHm_Chr7g0235611 RchiOBHm_Chr7g0235721 RchiOBHm_Chr7g0235771
rosa_laevigata	RLG00000001141 RLG00000001147 RLG00000001148 RLG00000001151 RLG00000001152 RLG00000001321 RLG00000029743
rosa_multiflora	Rmu_co8320053.1_g000001 Rmu_co8402261.1_g000001 Rmu_co8447535.1_g000001 Rmu_sc0001912.1_g000001 Rmu_sc0001912.1_g000003 Rmu_sc0002617.1_g000016 Rmu_sc0002617.1_g000017 Rmu_sc0002892.1_g000022 Rmu_sc0002892.1_g000023 Rmu_sc0002892.1_g000041 Rmu_sc0002892.1_g000042 Rmu_sc0007994.1_g000006 Rmu_sc0010963.1_g000008 Rmu_sc0011151.1_g000005 Rmu_sc0012467.1_g000003 Rmu_ssc0000471.1_g000012 Rmu_ssc0000471.1_g000013
rosa_roxburghii	Rroxscaffold_3G00225680 Rroxscaffold_3G00225800 Rroxscaffold_3G00225870 Rroxscaffold_3G00228130 Rroxscaffold_6G00391050
rosa_rugosa	Rorug07G0275200 Rorug07G0291500.1 Rorug07G0292000 Rorug07G0292200 Rorug07G0292500 Rorug07G0295900
rosa_samantha	Rh7AG430000 Rh7AG446600 Rh7AG446800 Rh7AG447200 Rh7AG447300 Rh7AG447500 Rh7BG403500 Rh7BG418300 Rh7BG418400 Rh7BG418800 Rh7BG419000 Rh7BG419100 Rh7BG419300 Rh7BG419400 Rh7BG419500 Rh7BG419700 Rh7CG448700 Rh7CG466600 Rh7CG467000 Rh7CG467200 Rh7CG467300 Rh7CG467400 Rh7CG467500 Rh7CG468000 Rh7DG419700 Rh7DG435300 Rh7DG435400 Rh7DG435500 Rh7DG435600 Rh7DG436000 Rh7DG436500
rosa_wichuraiana	Rw0G011890 Rw7G035510 Rw7G037080 Rw7G037090 Rw7G037110 Rw7G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AccII	CGCG	1 cut(s)	433
AclWI	GGATC	3 cut(s)	44, 141, 293
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	138, 395
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	132, 308
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	2 cut(s)	19, 350
AluI	AGCT	2 cut(s)	19, 350
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	3 cut(s)	44, 141, 293
AoxI	GGCC	4 cut(s)	161, 237, 271, 377
ApoI	RAATTY	2 cut(s)	138, 395
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	88, 308
BalI	TGGCCA	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BauI	CACGAG	1 cut(s)	170
BccI	CCATC	3 cut(s)	179, 263, 450
BceAI	ACGGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 308
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	132, 308
BseNI	ACTGG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	433
BshFI	GGCC	4 cut(s)	163, 239, 273, 379
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	132, 308
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	4 cut(s)	163, 239, 273, 379
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	36, 146, 298, 304
Bsp19I	CCATGG	1 cut(s)	240
BspANI	GGCC	4 cut(s)	163, 239, 273, 379
BspFNI	CGCG	1 cut(s)	433
BspPI	GGATC	3 cut(s)	44, 141, 293
BsrFI	RCCGGY	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	36, 146, 298, 304
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	76, 199
BstAUI	TGTACA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	4 cut(s)	39, 149, 301, 307
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	4 cut(s)	36, 146, 298, 304
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	36, 146
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	2 cut(s)	36, 146
BsuRI	GGCC	4 cut(s)	163, 239, 273, 379
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	161
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	159
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	207, 241
CviQI	GTAC	1 cut(s)	332
DpnI	GATC	4 cut(s)	38, 148, 300, 306
DpnII	GATC	4 cut(s)	36, 146, 298, 304
DraIII	CACNNNGTG	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	2 cut(s)	210, 244
FaiI	YATR	7 cut(s)	14, 98, 118, 208, 242, 282, 370
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FatI	CATG	2 cut(s)	206, 240
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	434
HaeIII	GGCC	4 cut(s)	163, 239, 273, 379
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	210, 244
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	88, 308
Hpy188I	TCNGA	2 cut(s)	394, 447
Hpy188III	TCNNGA	2 cut(s)	150, 302
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	76, 199
Hsp92II	CATG	2 cut(s)	210, 244
HspAI	GCGC	1 cut(s)	433
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	36, 146, 298, 304
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	117, 163, 173, 260, 287, 315, 320, 345, 399
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	53, 176, 212
MalI	GATC	4 cut(s)	38, 148, 300, 306
MboI	GATC	4 cut(s)	36, 146, 298, 304
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	2 cut(s)	36, 146
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	138, 365, 395
MluNI	TGGCCA	1 cut(s)	239
MmeI	TCCRAC	2 cut(s)	127, 136
MnlI	CCTC	5 cut(s)	179, 196, 244, 390, 446
Mox20I	TGGCCA	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	2 cut(s)	63, 86
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	1 cut(s)	239
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	433
NaeI	GCCGGC	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	36, 146, 298, 304
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	210, 244
NmuCI	GTSAC	2 cut(s)	53, 212
NspI	RCATGY	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	257
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PsuI	RGATCY	2 cut(s)	36, 146
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	63, 86
Sau3AI	GATC	4 cut(s)	36, 146, 298, 304
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	3 cut(s)	21, 339, 352
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	138, 365, 395
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	76, 199
TasI	AATT	3 cut(s)	138, 365, 395
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	63, 86
Tru9I	TTAA	2 cut(s)	63, 86
TseFI	GTSAC	2 cut(s)	53, 212
Tsp45I	GTSAC	2 cut(s)	53, 212
TspDTI	ATGAA	2 cut(s)	29, 243
XapI	RAATTY	2 cut(s)	138, 395
XceI	RCATGY	1 cut(s)	210
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.